Iftekhar Ahmed

Jiri Gesi, Siqi Liu, Jiawei Li et al.

As Deep learning (DL) systems continuously evolve and grow, assuring their quality becomes an important yet challenging task. Compared to non-DL systems, DL systems have more complex team compositions and heavier data dependency. These inherent characteristics would potentially cause DL systems to be more vulnerable to bugs and, in the long run, to maintenance issues. Code smells are empirically tested as efficient indicators of non-DL systems. Therefore, we took a step forward into identifying code smells, and understanding their impact on maintenance in this comprehensive study. This is the first study on investigating code smells in the context of DL software systems, which helps researchers and practitioners to get a first look at what kind of maintenance modification made and what code smells developers have been dealing with. Our paper has three major contributions. First, we comprehensively investigated the maintenance modifications that have been made by DL developers via studying the evolution of DL systems, and we identified nine frequently occurred maintenance-related modification categories in DL systems. Second, we summarized five code smells in DL systems. Third, we validated the prevalence, and the impact of our newly identified code smells through a mixture of qualitative and quantitative analysis. We found that our newly identified code smells are prevalent and impactful on the maintenance of DL systems from the developer's perspective.

Yong Jin Chun, Iftekhar Ahmed

Large Language Models (LLMs) have enabled collaborative Multi-Agent (MA) systems, where interacting agents improve performance through diverse reasoning and iterative refinement. However, these systems remain vulnerable to error propagation, where early-stage information degrades downstream reasoning. To address this, we conduct a systematic analysis of inter-agent communication to identify which information drives MA performance. We find that the absence of reasoning and verification in inter-agent communication significantly degrades performance. Based on these insights, we propose Category-Aware Recovery Augmentation (technique), which enforces the presence of critical information during communication. recovers up to 86.2% of failed cases. Our results highlight the key role of information quality in effective MA collaboration. Our code is available at https://anonymous.4open.science/r/cara_mas

Yuangang Li, Justin Tian Jin Chen, Ethan Yu et al.

Large language models (LLMs) increasingly rely on explicit reasoning to solve coding tasks, yet evaluating the quality of this reasoning remains challenging. Existing reasoning evaluators are not designed for coding, and current benchmarks focus primarily on code generation, leaving other coding tasks largely unexplored. We introduce CodeRQ-Bench, the first benchmark for evaluating LLM reasoning quality across three coding task categories: generation, summarization, and classification. Using this benchmark, we analyze 1,069 mismatch cases from existing evaluators, identify five recurring limitations, and derive four design insights for reasoning evaluation in coding tasks. Guided by these insights, we propose VERA, a two-stage evaluator that combines evidence-grounded verification with ambiguity-aware score correction. Experiments on CodeRQ-Bench show that VERA consistently outperforms strong baselines across four datasets, improving AUCROC by up to 0.26 and AUPRC by up to 0.21. We release CodeRQ-Bench at https://github.com/MrLYG/CodeRQ-Bench, supporting future investigations.

Md Rashedul Hasan, Jiawei Li, Iftekhar Ahmed et al.

The growing adoption of declarative software specification languages, coupled with their inherent difficulty in debugging, has underscored the need for effective and automated repair techniques applicable to such languages. Researchers have recently explored various methods to automatically repair declarative software specifications, such as template-based repair, feedback-driven iterative repair, and bounded exhaustive approaches. The latest developments in large language models provide new opportunities for the automatic repair of declarative specifications. In this study, we assess the effectiveness of utilizing OpenAI's ChatGPT to repair software specifications written in the Alloy declarative language. Unlike imperative languages, specifications in Alloy are not executed but rather translated into logical formulas and evaluated using backend constraint solvers to identify specification instances and counterexamples to assertions. Our evaluation focuses on ChatGPT's ability to improve the correctness and completeness of Alloy declarative specifications through automatic repairs. We analyze the results produced by ChatGPT and compare them with those of leading automatic Alloy repair methods. Our study revealed that while ChatGPT falls short in comparison to existing techniques, it was able to successfully repair bugs that no other technique could address. Our analysis also identified errors in ChatGPT's generated repairs, including improper operator usage, type errors, higher-order logic misuse, and relational arity mismatches. Additionally, we observed instances of hallucinations in ChatGPT-generated repairs and inconsistency in its results. Our study provides valuable insights for software practitioners, researchers, and tool builders considering ChatGPT for declarative specification repairs.

Agnia Sergeyuk, Eric Huang, Dariia Karaeva et al.

AI-powered coding assistants are rapidly becoming fixtures in professional IDEs, yet their sustained influence on everyday development remains poorly understood. Prior research has focused on short-term use or self-reported perceptions, leaving open questions about how sustained AI use reshapes actual daily coding practices in the long term. We address this gap with a mixed-method study of AI adoption in IDEs, combining longitudinal two-year fine-grained telemetry from 800 developers with a survey of 62 professionals. We analyze five dimensions of workflow change: productivity, code quality, code editing, code reuse, and context switching. Telemetry reveals that AI users produce substantially more code but also delete significantly more. Meanwhile, survey respondents report productivity gains and perceive minimal changes in other dimensions. Our results offer empirical insights into the silent restructuring of software workflows and provide implications for designing future AI-augmented tooling.

Iftekhar Ahmed, Shakib Absar, Aftar Ahmad Sami et al.

Precise segmentation of retinal arteries and veins carries the diagnosis of systemic cardiovascular conditions. However, standard convolutional architectures often yield topologically disjointed segmentations, characterized by gaps and discontinuities that render reliable graph-based clinical analysis impossible despite high pixel-level accuracy. To address this, we introduce a topology-aware framework engineered to maintain vascular connectivity. Our architecture fuses a Topological Feature Fusion Module (TFFM) that maps local feature representations into a latent graph space, deploying Graph Attention Networks to capture global structural dependencies often missed by fixed receptive fields. Furthermore, we drive the learning process with a hybrid objective function, coupling Tversky loss for class imbalance with soft clDice loss to explicitly penalize topological disconnects. Evaluation on the Fundus-AVSeg dataset reveals state-of-the-art performance, achieving a combined Dice score of 90.97% and a 95% Hausdorff Distance of 3.50 pixels. Notably, our method decreases vessel fragmentation by approximately 38% relative to baselines, yielding topologically coherent vascular trees viable for automated biomarker quantification. We open-source our code at https://tffm-module.github.io/.

Zixuan Feng, Amreeta Chatterjee, Anita Sarma et al.

Mentoring is traditionally viewed as a dyadic, top-down apprenticeship. This perspective, however, overlooks other forms of informal mentoring taking place in everyday activities in which developers invest time and effort, but remain unacknowledged. Here, we investigate the different flavors of mentoring in Open Source Software (OSS) to define and identify implicit mentoring. We first define implicit mentoring--situations where contributors guide others through instructions and suggestions embedded in everyday (OSS) activities--through formative interviews with OSS contributors, a literature review, and member-checking. Next, through an empirical investigation of Pull Requests (PRs) in 37 Apache Projects, we build a classifier to extract implicit mentoring and characterize it through the dual lenses of experience and gender. Our analysis of 107,895 PRs shows that implicit mentoring occurs (27.41% of all PRs include implicit mentoring) and it does not follow the traditional dyadic, top-down apprenticeship model. When considering the gender of mentor-mentee pairs, we found pervasive homophily--a preference to mentor those who are of the same gender--in 93.81% cases. In the cross-gender mentoring instances, women were more likely to mentor men.

QiHong Chen, Jiachen Yu, Jiawei Li et al.

Recent advancements in Large Language Models (LLMs) have led to their widespread application in automated code generation. However, these models can still generate defective code that deviates from the specification. Previous research has mainly focused on the mistakes in LLM-generated standalone functions, overlooking real-world software development situations where the successful generation of the code requires software contexts such as external dependencies. In this paper, we considered both of these code generation situations and identified a range of \textit{non-syntactic mistakes} arising from LLMs' misunderstandings of coding question specifications. Seven categories of non-syntactic mistakes were identified through extensive manual analyses, four of which were missed by previous works. To better understand these mistakes, we proposed six reasons behind these mistakes from various perspectives. Moreover, we explored the effectiveness of LLMs in detecting mistakes and their reasons. Our evaluation demonstrated that GPT-4 with the ReAct prompting technique can achieve an F1 score of up to 0.65 when identifying reasons for LLM's mistakes, such as misleading function signatures. We believe that these findings offer valuable insights into enhancing the quality of LLM-generated code.

Iftekhar Ahmed, Tanzil Ebad Chowdhury, Biggo Bushon Routh et al.

Kidneys are the filter of the human body. About 10% of the global population is thought to be affected by Chronic Kidney Disease (CKD), which causes kidney function to decline. To protect in danger patients from additional kidney damage, effective risk evaluation of CKD and appropriate CKD monitoring are crucial. Due to quick and precise detection capabilities, Machine Learning models can help practitioners accomplish this goal efficiently; therefore, an enormous number of diagnosis systems and processes in the healthcare sector nowadays are relying on machine learning due to its disease prediction capability. In this study, we designed and suggested disease predictive computer-aided designs for the diagnosis of CKD. The dataset for CKD is attained from the repository of machine learning of UCL, with a few missing values; those are filled in using "mean-mode" and "Random sampling method" strategies. After successfully achieving the missing data, eight ML techniques (Random Forest, SVM, Naive Bayes, Logistic Regression, KNN, XGBoost, Decision Tree, and AdaBoost) were used to establish models, and the performance evaluation comparisons among the result accuracies are measured by the techniques to find the machine learning models with the highest accuracy. Among them, Random Forest as well as Logistic Regression showed an outstanding 99% accuracy, followed by the Ada Boost, XGBoost, Naive Bayes, Decision Tree, and SVM, whereas the KNN classifier model stands last with an accuracy of 73%.

Md. Arifuzzaman, Iftekhar Ahmed, Md. Jalal Uddin Chowdhury et al.

Chronic Kidney Disease (CKD) represents a significant global health challenge, characterized by the progressive decline in renal function, leading to the accumulation of waste products and disruptions in fluid balance within the body. Given its pervasive impact on public health, there is a pressing need for effective diagnostic tools to enable timely intervention. Our study delves into the application of cutting-edge transfer learning models for the early detection of CKD. Leveraging a comprehensive and publicly available dataset, we meticulously evaluate the performance of several state-of-the-art models, including EfficientNetV2, InceptionNetV2, MobileNetV2, and the Vision Transformer (ViT) technique. Remarkably, our analysis demonstrates superior accuracy rates, surpassing the 90% threshold with MobileNetV2 and achieving 91.5% accuracy with ViT. Moreover, to enhance predictive capabilities further, we integrate these individual methodologies through ensemble modeling, resulting in our ensemble model exhibiting a remarkable 96% accuracy in the early detection of CKD. This significant advancement holds immense promise for improving clinical outcomes and underscores the critical role of machine learning in addressing complex medical challenges.

Sadia Afrin Rimi, Md. Jalal Uddin Chowdhury, Rifat Abdullah et al.

The number of people living in this agricultural nation of ours, which is surrounded by lush greenery, is growing on a daily basis. As a result of this, the level of arable land is decreasing, as well as residential houses and industrial factories. The food crisis is becoming the main threat for us in the upcoming days. Because on the one hand, the population is increasing, and on the other hand, the amount of food crop production is decreasing due to the attack of diseases. Rice is one of the most significant cultivated crops since it provides food for more than half of the world's population. Bangladesh is dependent on rice (Oryza sativa) as a vital crop for its agriculture, but it faces a significant problem as a result of the ongoing decline in rice yield brought on by common diseases. Early disease detection is the main difficulty in rice crop cultivation. In this paper, we proposed our own dataset, which was collected from the Bangladesh field, and also applied deep learning and transfer learning models for the evaluation of the datasets. We elaborately explain our dataset and also give direction for further research work to serve society using this dataset. We applied a light CNN model and pre-trained InceptionNet-V2, EfficientNet-V2, and MobileNet-V2 models, which achieved 91.5% performance for the EfficientNet-V2 model of this work. The results obtained assaulted other models and even exceeded approaches that are considered to be part of the state of the art. It has been demonstrated by this study that it is possible to precisely and effectively identify diseases that affect rice leaves using this unbiased datasets. After analysis of the performance of different models, the proposed datasets are significant for the society for research work to provide solutions for decreasing rice leaf disease.

Agnia Sergeyuk, Yaroslav Golubev, Timofey Bryksin et al.

Context. The last several years saw the emergence of AI assistants for code - multi-purpose AI-based helpers in software engineering. As they become omnipresent in all aspects of software development, it becomes critical to understand their usage patterns. Objective. We aim to better understand how specifically developers are using AI assistants, why they are not using them in certain parts of their development workflow, and what needs to be improved in the future. Methods. In this work, we carried out a large-scale survey aimed at how AI assistants are used, focusing on specific software development activities and stages. We collected opinions of 481 programmers on five broad activities: (a) implementing new features, (b) writing tests, (c) bug triaging, (d) refactoring, and (e) writing natural-language artifacts, as well as their individual stages. Results. Our results provide a novel comparison of different stages where AI assistants are used that is both comprehensive and detailed. It highlights specific activities that developers find less enjoyable and want to delegate to an AI assistant, e.g., writing tests and natural-language artifacts. We also determine more granular stages where AI assistants are used, such as generating tests and generating docstrings, as well as less studied parts of the workflow, such as generating test data. Among the reasons for not using assistants, there are general aspects like trust and company policies, as well as more concrete issues like the lack of project-size context, which can be the focus of the future research. Conclusion. The provided analysis highlights stages of software development that developers want to delegate and that are already popular for using AI assistants, which can be a good focus for features aimed to help developers right now. The main reasons for not using AI assistants can serve as a guideline for future work.

Jiri Gesi, Iftekhar Ahmed

Transformer-based models have demonstrated considerable potential for source code modeling tasks in software engineering. However, they are limited by their dependence solely on automatic self-attention weight learning mechanisms. Previous studies have shown that these models overemphasize delimiters added by tokenizers (e.g., [CLS], [SEP]), which may lead to overlooking essential information in the original input source code. To address this challenge, we introduce SyntaGuid, a novel approach that utilizes the observation that attention weights tend to be biased towards specific source code syntax tokens and abstract syntax tree (AST) elements in fine-tuned language models when they make correct predictions. SyntaGuid facilitates the guidance of attention-weight learning, leading to improved model performance on various software engineering tasks. We evaluate the effectiveness of SyntaGuid on multiple tasks and demonstrate that it outperforms existing state-of-the-art models in overall performance without requiring additional data. Experimental result shows that SyntaGuid can improve overall performance up to 3.25% and fix up to 28.3% wrong predictions. Our work represents the first attempt to guide the attention of Transformer-based models towards critical source code tokens during fine-tuning, highlighting the potential for enhancing Transformer-based models in software engineering.

Tongjie Wang, Yaroslav Golubev, Oleg Smirnov et al.

Similarly to production code, code smells also occur in test code, where they are called test smells. Test smells have a detrimental effect not only on test code but also on the production code that is being tested. To date, the majority of the research on test smells has been focusing on programming languages such as Java and Scala. However, there are no available automated tools to support the identification of test smells for Python, despite its rapid growth in popularity in recent years. In this paper, we strive to extend the research to Python, build a tool for detecting test smells in this language, and conduct an empirical analysis of test smells in Python projects. We started by gathering a list of test smells from existing research and selecting test smells that can be considered language-agnostic or have similar functionality in Python's standard Unittest framework. In total, we identified 17 diverse test smells. Additionally, we searched for Python-specific test smells by mining frequent code change patterns that can be considered as either fixing or introducing test smells. Based on these changes, we proposed our own test smell called Suboptimal assert. To detect all these test smells, we developed a tool called PyNose in the form of a plugin to PyCharm, a popular Python IDE. Finally, we conducted a large-scale empirical investigation aimed at analyzing the prevalence of test smells in Python code. Our results show that 98% of the projects and 84% of the test suites in the studied dataset contain at least one test smell. Our proposed Suboptimal assert smell was detected in as much as 70.6% of the projects, making it a valuable addition to the list.

Yaroslav Golubev, Jiawei Li, Viacheslav Bushev et al.

Code changes constitute one of the most important features of software evolution. Studying them can provide insights into the nature of software development and also lead to practical solutions - recommendations and automations of popular changes for developers. In our work, we developed a tool called PythonChangeMiner that allows to discover code change patterns in the histories of Python projects. We validated the tool and then employed it to discover patterns in the dataset of 120 projects from four different domains of software engineering. We manually categorized patterns that occur in more than one project from the standpoint of their structure and content, and compared different domains and patterns in that regard. We conducted a survey of the authors of the discovered changes: 82.9% of them said that they can give the change a name and 57.9% expressed their desire to have the changes automated, indicating the ability of the tool to discover valuable patterns. Finally, we interviewed 9 members of a popular integrated development environment (IDE) development team to estimate the feasibility of automating the discovered changes. It was revealed that independence from the context and high precision made a pattern a better candidate for automation. The patterns received mainly positive reviews and several were ranked as very likely for automation.

Josie Holmes, Iftekhar Ahmed, Caius Brindescu et al.

Raw lines of code (LOC) is a metric that does not, at first glance, seem extremely useful for automated test generation. It is both highly language-dependent and not extremely meaningful, semantically, within a language: one coder can produce the same effect with many fewer lines than another. However, relative LOC, between components of the same project, turns out to be a highly useful metric for automated testing. In this paper, we make use of a heuristic based on LOC counts for tested functions to dramatically improve the effectiveness of automated test generation. This approach is particularly valuable in languages where collecting code coverage data to guide testing has a very high overhead.We apply the heuristic to property-based Python testing using the TSTL (Template Scripting Testing Language) tool. In our experiments, the simple LOC heuristic can improve branch and statement coverage by large margins (often more than 20%, up to 40% or more), and improve fault detection by an even larger margin (usually more than 75%, and up to 400% or more). The LOC heuristic is also easy to combine with other approaches, and is comparable to, and possibly more effective than, two well-established approaches for guiding random testing.

Andrew Truelove, Eduardo Santana de Almeida, Iftekhar Ahmed

Bugs that persist into releases of video games can have negative impacts on both developers and users, but particular aspects of testing in game development can lead to difficulties in effectively catching these missed bugs. It has become common practice for developers to apply updates to games in order to fix missed bugs. These updates are often accompanied by notes that describe the changes to the game included in the update. However, some bugs reappear even after an update attempts to fix them. In this paper, we develop a taxonomy for bug types in games that is based on prior work. We examine 12,122 bug fixes from 723 updates for 30 popular games on the Steam platform. We label the bug fixes included in these updates to identify the frequency of these different bug types, the rate at which bug types recur over multiple updates, and which bug types are treated as more severe. Additionally, we survey game developers regarding their experience with different bug types and what aspects of game development they most strongly associate with bug appearance. We find that Information bugs appear the most frequently in updates, while Crash bugs recur the most frequently and are often treated as more severe than other bug types. Finally, we find that challenges in testing, code quality, and bug reproduction have a close association with bug persistence. These findings should help developers identify which aspects of game development could benefit from greater attention in order to prevent bugs. Researchers can use our results in devising tools and methods to better identify and address certain bug types.

Paulo Anselmo da Mota Silveira Neto, Umme Ayda Mannan, Eduardo Santana de Almeida et al.

Context: COVID-19 pandemic has impacted different business sectors around the world. Objective. This study investigates the impact of COVID-19 on software projects and software development professionals. Method: We conducted a mining software repository study based on 100 GitHub projects developed in Java using ten different metrics. Next, we surveyed 279 software development professionals for better understanding the impact of COVID-19 on daily activities and wellbeing. Results: We identified 12 observations related to productivity, code quality, and wellbeing. Conclusions: Our findings highlight that the impact of COVID-19 is not binary (reduce productivity vs. increase productivity) but rather a spectrum. For many of our observations, substantial proportions of respondents have differing opinions from each other. We believe that more research is needed to uncover specific conditions that cause certain outcomes to be more prevalent.

Soodeh Atefi, Andrew Truelove, Matheus Rheinschmitt et al.

Conversational systems use spoken language to interact with their users. Although conversational systems, such as Amazon Alexa, are becoming common and afford interesting functionalities, there is little known about the issues users of these systems face. In this paper, we study user reviews of more than 2,800 Alexa skills to understand the characteristics of the reviews and issues that are raised in them. Our results suggest that most skills receive less than 50 reviews. Our qualitative study of user reviews using open coding resulted in identifying 16 types of issues in the user reviews. Issues related to the content, integration with online services and devices, error, and regression are top issues raised by the users. Our results also indicate differences in volume and types of complaints by users when compared with more traditional mobile applications. We discuss the implication of our results for practitioners and researchers.