Yang Zhang

Yao Zhang, Nanjun He, Jiawei Yang et al.

Accurate brain tumor segmentation from Magnetic Resonance Imaging (MRI) is desirable to joint learning of multimodal images. However, in clinical practice, it is not always possible to acquire a complete set of MRIs, and the problem of missing modalities causes severe performance degradation in existing multimodal segmentation methods. In this work, we present the first attempt to exploit the Transformer for multimodal brain tumor segmentation that is robust to any combinatorial subset of available modalities. Concretely, we propose a novel multimodal Medical Transformer (mmFormer) for incomplete multimodal learning with three main components: the hybrid modality-specific encoders that bridge a convolutional encoder and an intra-modal Transformer for both local and global context modeling within each modality; an inter-modal Transformer to build and align the long-range correlations across modalities for modality-invariant features with global semantics corresponding to tumor region; a decoder that performs a progressive up-sampling and fusion with the modality-invariant features to generate robust segmentation. Besides, auxiliary regularizers are introduced in both encoder and decoder to further enhance the model's robustness to incomplete modalities. We conduct extensive experiments on the public BraTS $2018$ dataset for brain tumor segmentation. The results demonstrate that the proposed mmFormer outperforms the state-of-the-art methods for incomplete multimodal brain tumor segmentation on almost all subsets of incomplete modalities, especially by an average 19.07% improvement of Dice on tumor segmentation with only one available modality. The code is available at https://github.com/YaoZhang93/mmFormer.

An Wang, Mobarakol Islam, Mengya Xu et al.

The Segment Anything Model (SAM) serves as a fundamental model for semantic segmentation and demonstrates remarkable generalization capabilities across a wide range of downstream scenarios. In this empirical study, we examine SAM's robustness and zero-shot generalizability in the field of robotic surgery. We comprehensively explore different scenarios, including prompted and unprompted situations, bounding box and points-based prompt approaches, as well as the ability to generalize under corruptions and perturbations at five severity levels. Additionally, we compare the performance of SAM with state-of-the-art supervised models. We conduct all the experiments with two well-known robotic instrument segmentation datasets from MICCAI EndoVis 2017 and 2018 challenges. Our extensive evaluation results reveal that although SAM shows remarkable zero-shot generalization ability with bounding box prompts, it struggles to segment the whole instrument with point-based prompts and unprompted settings. Furthermore, our qualitative figures demonstrate that the model either failed to predict certain parts of the instrument mask (e.g., jaws, wrist) or predicted parts of the instrument as wrong classes in the scenario of overlapping instruments within the same bounding box or with the point-based prompt. In fact, SAM struggles to identify instruments in complex surgical scenarios characterized by the presence of blood, reflection, blur, and shade. Additionally, SAM is insufficiently robust to maintain high performance when subjected to various forms of data corruption. We also attempt to fine-tune SAM using Low-rank Adaptation (LoRA) and propose SurgicalSAM, which shows the capability in class-wise mask prediction without prompt. Therefore, we can argue that, without further domain-specific fine-tuning, SAM is not ready for downstream surgical tasks.

Yang Liu, Yao Zhang, Yixin Wang et al.

Recently, the dominant DETR-based approaches apply central-concept spatial prior to accelerate Transformer detector convergency. These methods gradually refine the reference points to the center of target objects and imbue object queries with the updated central reference information for spatially conditional attention. However, centralizing reference points may severely deteriorate queries' saliency and confuse detectors due to the indiscriminative spatial prior. To bridge the gap between the reference points of salient queries and Transformer detectors, we propose SAlient Point-based DETR (SAP-DETR) by treating object detection as a transformation from salient points to instance objects. In SAP-DETR, we explicitly initialize a query-specific reference point for each object query, gradually aggregate them into an instance object, and then predict the distance from each side of the bounding box to these points. By rapidly attending to query-specific reference region and other conditional extreme regions from the image features, SAP-DETR can effectively bridge the gap between the salient point and the query-based Transformer detector with a significant convergency speed. Our extensive experiments have demonstrated that SAP-DETR achieves 1.4 times convergency speed with competitive performance. Under the standard training scheme, SAP-DETR stably promotes the SOTA approaches by 1.0 AP. Based on ResNet-DC-101, SAP-DETR achieves 46.9 AP.

An Wang, Mobarakol Islam, Mengya Xu et al.

Segment Anything Model (SAM) is a foundation model for semantic segmentation and shows excellent generalization capability with the prompts. In this empirical study, we investigate the robustness and zero-shot generalizability of the SAM in the domain of robotic surgery in various settings of (i) prompted vs. unprompted; (ii) bounding box vs. points-based prompt; (iii) generalization under corruptions and perturbations with five severity levels; and (iv) state-of-the-art supervised model vs. SAM. We conduct all the observations with two well-known robotic instrument segmentation datasets of MICCAI EndoVis 2017 and 2018 challenges. Our extensive evaluation results reveal that although SAM shows remarkable zero-shot generalization ability with bounding box prompts, it struggles to segment the whole instrument with point-based prompts and unprompted settings. Furthermore, our qualitative figures demonstrate that the model either failed to predict the parts of the instrument mask (e.g., jaws, wrist) or predicted parts of the instrument as different classes in the scenario of overlapping instruments within the same bounding box or with the point-based prompt. In fact, it is unable to identify instruments in some complex surgical scenarios of blood, reflection, blur, and shade. Additionally, SAM is insufficiently robust to maintain high performance when subjected to various forms of data corruption. Therefore, we can argue that SAM is not ready for downstream surgical tasks without further domain-specific fine-tuning.

Yonghui Zhai, Yang Zhang, Minghao Shang et al.

Graph Transformers (GTs) have shown advantages in numerous graph structure tasks but their self-attention mechanism ignores the generalization bias of graphs, with existing methods mainly compensating for this bias from aspects like position encoding, attention bias and relative distance yet still having sub-optimal performance and being insufficient by only considering the structural perspective of generalization bias. To address this, this paper proposes Grafourierformer, which innovatively combines GT with inductive bias containing Frequency-Structure information by applying Graph Fourier Transform to the Attention Matrix: specifically, eigenvalues from the Graph Laplacian matrix are used to construct an Eigenvalue matrix mask (reflecting node positions and structural relationships with neighboring nodes to enable consideration of node range structural characteristics and focus on local graph details), and inverse Fourier transform is employed to extract node high-frequency and low-frequency features, calculate low-frequency and high-frequency energy, and construct a node frequency-energy matrix to filter the eigenvalue matrix mask, allowing attention heads to incorporate both graph structural information and node frequency information optimization, adaptively distinguish global trends from local details, and effectively suppress redundant information interference. Extensive experiments on various benchmarks show Grafourierformer consistently outperforms GNN and GT-based models in graph classification and node classification tasks, with ablation experiments further validating the effectiveness and necessity of the method. Codes are available at https://github.com/Arichibald/Grafourierformer.git

Guodong Sun, Junjie Liu, Mingxuan Liu et al.

Self-supervised monocular depth estimation aims to infer depth information without relying on labeled data. However, the lack of labeled information poses a significant challenge to the model's representation, limiting its ability to capture the intricate details of the scene accurately. Prior information can potentially mitigate this issue, enhancing the model's understanding of scene structure and texture. Nevertheless, solely relying on a single type of prior information often falls short when dealing with complex scenes, necessitating improvements in generalization performance. To address these challenges, we introduce a novel self-supervised monocular depth estimation model that leverages multiple priors to bolster representation capabilities across spatial, context, and semantic dimensions. Specifically, we employ a hybrid transformer and a lightweight pose network to obtain long-range spatial priors in the spatial dimension. Then, the context prior attention is designed to improve generalization, particularly in complex structures or untextured areas. In addition, semantic priors are introduced by leveraging semantic boundary loss, and semantic prior attention is supplemented, further refining the semantic features extracted by the decoder. Experiments on three diverse datasets demonstrate the effectiveness of the proposed model. It integrates multiple priors to comprehensively enhance the representation ability, improving the accuracy and reliability of depth estimation. Codes are available at: \url{https://github.com/MVME-HBUT/MPRLNet}

Yao Zhang, Jiawei Yang, Jiang Tian et al.

Liver cancer is one of the most common cancers worldwide. Due to inconspicuous texture changes of liver tumor, contrast-enhanced computed tomography (CT) imaging is effective for the diagnosis of liver cancer. In this paper, we focus on improving automated liver tumor segmentation by integrating multi-modal CT images. To this end, we propose a novel mutual learning (ML) strategy for effective and robust multi-modal liver tumor segmentation. Different from existing multi-modal methods that fuse information from different modalities by a single model, with ML, an ensemble of modality-specific models learn collaboratively and teach each other to distill both the characteristics and the commonality between high-level representations of different modalities. The proposed ML not only enables the superiority for multi-modal learning but can also handle missing modalities by transferring knowledge from existing modalities to missing ones. Additionally, we present a modality-aware (MA) module, where the modality-specific models are interconnected and calibrated with attention weights for adaptive information exchange. The proposed modality-aware mutual learning (MAML) method achieves promising results for liver tumor segmentation on a large-scale clinical dataset. Moreover, we show the efficacy and robustness of MAML for handling missing modalities on both the liver tumor and public brain tumor (BRATS 2018) datasets. Our code is available at https://github.com/YaoZhang93/MAML.

Yonggan Fu, Yongan Zhang, Yang Zhang et al.

While maximizing deep neural networks' (DNNs') acceleration efficiency requires a joint search/design of three different yet highly coupled aspects, including the networks, bitwidths, and accelerators, the challenges associated with such a joint search have not yet been fully understood and addressed. The key challenges include (1) the dilemma of whether to explode the memory consumption due to the huge joint space or achieve sub-optimal designs, (2) the discrete nature of the accelerator design space that is coupled yet different from that of the networks and bitwidths, and (3) the chicken and egg problem associated with network-accelerator co-search, i.e., co-search requires operation-wise hardware cost, which is lacking during search as the optimal accelerator depending on the whole network is still unknown during search. To tackle these daunting challenges towards optimal and fast development of DNN accelerators, we propose a framework dubbed Auto-NBA to enable jointly searching for the Networks, Bitwidths, and Accelerators, by efficiently localizing the optimal design within the huge joint design space for each target dataset and acceleration specification. Our Auto-NBA integrates a heterogeneous sampling strategy to achieve unbiased search with constant memory consumption, and a novel joint-search pipeline equipped with a generic differentiable accelerator search engine. Extensive experiments and ablation studies validate that both Auto-NBA generated networks and accelerators consistently outperform state-of-the-art designs (including co-search/exploration techniques, hardware-aware NAS methods, and DNN accelerators), in terms of search time, task accuracy, and accelerator efficiency. Our codes are available at: https://github.com/RICE-EIC/Auto-NBA.

Shiyu Chang, Yang Zhang, Wei Han et al.

Learning with recurrent neural networks (RNNs) on long sequences is a notoriously difficult task. There are three major challenges: 1) complex dependencies, 2) vanishing and exploding gradients, and 3) efficient parallelization. In this paper, we introduce a simple yet effective RNN connection structure, the DilatedRNN, which simultaneously tackles all of these challenges. The proposed architecture is characterized by multi-resolution dilated recurrent skip connections and can be combined flexibly with diverse RNN cells. Moreover, the DilatedRNN reduces the number of parameters needed and enhances training efficiency significantly, while matching state-of-the-art performance (even with standard RNN cells) in tasks involving very long-term dependencies. To provide a theory-based quantification of the architecture's advantages, we introduce a memory capacity measure, the mean recurrent length, which is more suitable for RNNs with long skip connections than existing measures. We rigorously prove the advantages of the DilatedRNN over other recurrent neural architectures. The code for our method is publicly available at https://github.com/code-terminator/DilatedRNN

Jinbo Wen, Jiawen Kang, Dusit Niyato et al.

Data augmentation as a technique can mitigate data scarcity in machine learning. However, owing to fundamental differences in wireless data structures, traditional data augmentation techniques may not be suitable for wireless data. Fortunately, Generative Artificial Intelligence (GenAI) can be an effective solution to wireless data augmentation due to its excellent data generation capability. This article systematically explores the potential and effectiveness of generative data augmentation in wireless networks. We first briefly review data augmentation techniques, discuss their limitations in wireless networks, and introduce generative data augmentation, including reviewing GenAI models and their applications in data augmentation. We then explore the application prospects of generative data augmentation in wireless networks from the physical, network, and application layers, providing a generative data augmentation architecture for each application. Subsequently, we propose a general generative data augmentation framework for Wi-Fi gesture recognition. Specifically, we leverage transformer-based diffusion models to generate high-quality channel state information data. To evaluate the effectiveness of the proposed framework, we conduct a case study using the Widar 3.0 dataset, which employs a residual network model for Wi-Fi gesture recognition. Simulation results demonstrate that the proposed framework can enhance the performance of Wi-Fi gesture recognition. Finally, we discuss research directions for generative data augmentation.

Yiting Qu, Zhikun Zhang, Yun Shen et al.

To prevent the mischievous use of synthetic (fake) point clouds produced by generative models, we pioneer the study of detecting point cloud authenticity and attributing them to their sources. We propose an attribution framework, FAKEPCD, to attribute (fake) point clouds to their respective generative models (or real-world collections). The main idea of FAKEPCD is to train an attribution model that learns the point cloud features from different sources and further differentiates these sources using an attribution signal. Depending on the characteristics of the training point clouds, namely, sources and shapes, we formulate four attribution scenarios: close-world, open-world, single-shape, and multiple-shape, and evaluate FAKEPCD's performance in each scenario. Extensive experimental results demonstrate the effectiveness of FAKEPCD on source attribution across different scenarios. Take the open-world attribution as an example, FAKEPCD attributes point clouds to known sources with an accuracy of 0.82-0.98 and to unknown sources with an accuracy of 0.73-1.00. Additionally, we introduce an approach to visualize unique patterns (fingerprints) in point clouds associated with each source. This explains how FAKEPCD recognizes point clouds from various sources by focusing on distinct areas within them. Overall, we hope our study establishes a baseline for the source attribution of (fake) point clouds.

Tom Le Paine, Pooya Khorrami, Shiyu Chang et al.

This paper presents an efficient implementation of the Wavenet generation process called Fast Wavenet. Compared to a naive implementation that has complexity O(2^L) (L denotes the number of layers in the network), our proposed approach removes redundant convolution operations by caching previous calculations, thereby reducing the complexity to O(L) time. Timing experiments show significant advantages of our fast implementation over a naive one. While this method is presented for Wavenet, the same scheme can be applied anytime one wants to perform autoregressive generation or online prediction using a model with dilated convolution layers. The code for our method is publicly available.