Pengfei Jiao

Hongjiang Chen, Xin Zheng, Pengfei Jiao et al.

Temporal graph neural networks (TGNNs) have gained significant traction for solving real-world temporal graph tasks. However, their interpretability remains limited, as most TGNNs fail to identify which historical interactions most influence a given prediction. Despite promising progress on interpretable TGNNs, existing methods predominantly focus on previously seen historical interactions, which we term stability patterns, while overlooking newly emerging first-time interactions, which we term transition patterns. Both types of patterns are essential for faithful temporal explanations. To address this limitation, we propose ST-TGExplainer, a self-explainable TGNN that disentangles Stability and Transition patterns in temporal graphs for a more faithful Temporal GNN Explainer. Guided by a disentangled information bottleneck objective, ST-TGExplainer learns a compact explanatory subgraph that remains predictive of the event label while explicitly suppressing label-conditioned redundancy between stability and transition patterns. Extensive experiments demonstrate that ST-TGExplainer achieves strong predictive performance and yields more faithful explanations. Code is available at https://github.com/hjchen-hdu/ST-TGExplainer.

Hongjiang Chen, Pengfei Jiao, Huijun Tang et al.

Temporal graph representation learning aims to generate low-dimensional dynamic node embeddings to capture temporal information as well as structural and property information. Current representation learning methods for temporal networks often focus on capturing fine-grained information, which may lead to the model capturing random noise instead of essential semantic information. While graph contrastive learning has shown promise in dealing with noise, it only applies to static graphs or snapshots and may not be suitable for handling time-dependent noise. To alleviate the above challenge, we propose a novel Temporal Graph representation learning with Adaptive augmentation Contrastive (TGAC) model. The adaptive augmentation on the temporal graph is made by combining prior knowledge with temporal information, and the contrastive objective function is constructed by defining the augmented inter-view contrast and intra-view contrast. To complement TGAC, we propose three adaptive augmentation strategies that modify topological features to reduce noise from the network. Our extensive experiments on various real networks demonstrate that the proposed model outperforms other temporal graph representation learning methods.

Hongjiang Chen, Pengfei Jiao, Ming Du et al.

The growing interest in Temporal Graph Neural Networks (TGNNs) stems from their ability to model complex dynamics and deliver superior performance. However, TGNNs encounter fundamental challenges in capturing long-term dependencies and identifying periodic patterns. To address these limitations, we propose TGFormer, a novel Transformer architecture specifically designed for temporal graphs. Our model redefines temporal graph learning by establishing a trajectory framework that aligns with time series analysis principles. This approach allows TGFormer to derive node representations through systematic analysis of historical interactions, enabling granular examination of node relationships across sequential timestamps. Building upon stochastic process theory, we develop an auto-correlation mechanism that systematically uncovers periodic dependencies in node interactions. This innovation empowers TGFormer to perform dependency discovery and representation aggregation at sub-interaction levels, demonstrating superior efficiency and accuracy compared to conventional attention mechanisms. Experimental validation across six public benchmarks confirms the effectiveness of our approach, with TGFormer at most achieving 9.35\% precision improvement compared to state-of-the-art approaches.

Zihui Chen, Yuling Wang, Pengfei Jiao et al.

Text-attributed graphs (TAGs) enhance graph learning by integrating rich textual semantics and topological context for each node. While boosting expressiveness, they also expose new vulnerabilities in graph learning through text-based adversarial surfaces. Recent advances leverage diverse backbones, such as graph neural networks (GNNs) and pre-trained language models (PLMs), to capture both structural and textual information in TAGs. This diversity raises a key question: How can we design universal adversarial attacks that generalize across architectures to assess the security of TAG models? The challenge arises from the stark contrast in how different backbones-GNNs and PLMs-perceive and encode graph patterns, coupled with the fact that many PLMs are only accessible via APIs, limiting attacks to black-box settings. To address this, we propose BadGraph, a novel attack framework that deeply elicits large language models (LLMs) understanding of general graph knowledge to jointly perturb both node topology and textual semantics. Specifically, we design a target influencer retrieval module that leverages graph priors to construct cross-modally aligned attack shortcuts, thereby enabling efficient LLM-based perturbation reasoning. Experiments show that BadGraph achieves universal and effective attacks across GNN- and LLM-based reasoners, with up to a 76.3% performance drop, while theoretical and empirical analyses confirm its stealthy yet interpretable nature.

Pinlong Zhao, Weiyao Zhu, Pengfei Jiao et al.

Deep learning has become a cornerstone of modern artificial intelligence, enabling transformative applications across a wide range of domains. As the core element of deep learning, the quality and security of training data critically influence model performance and reliability. However, during the training process, deep learning models face the significant threat of data poisoning, where attackers introduce maliciously manipulated training data to degrade model accuracy or lead to anomalous behavior. While existing surveys provide valuable insights into data poisoning, they generally adopt a broad perspective, encompassing both attacks and defenses, but lack a dedicated, in-depth analysis of poisoning attacks specifically in deep learning. In this survey, we bridge this gap by presenting a comprehensive and targeted review of data poisoning in deep learning. First, this survey categorizes data poisoning attacks across multiple perspectives, providing an in-depth analysis of their characteristics and underlying design princinples. Second, the discussion is extended to the emerging area of data poisoning in large language models(LLMs). Finally, we explore critical open challenges in the field and propose potential research directions to advance the field further. To support further exploration, an up-to-date repository of resources on data poisoning in deep learning is available at https://github.com/Pinlong-Zhao/Data-Poisoning.

Hongjiang Chen, Xin Zheng, Yixin Liu et al.

Large language model (LLM)-based multi-agent systems (MAS) have demonstrated exceptional capabilities in solving complex tasks, yet their effectiveness depends heavily on the underlying communication topology that coordinates agent interactions. Within these systems, successful problem-solving often necessitates task-specific group structures to divide and conquer subtasks. However, most existing approaches generate communication topologies in a node-centric manner, leaving group structures to emerge implicitly from local connectivity decisions rather than modeling them explicitly, often leading to suboptimal coordination and unnecessary communication overhead. To address this limitation, we propose GoAgent (Group-of-Agents), a communication topology generation method that explicitly treats collaborative groups as the atomic units of MAS construction. Specifically, GoAgent first enumerates task-relevant candidate groups through an LLM and then autoregressively selects and connects these groups as atomic units to construct the final communication graph, jointly capturing intra-group cohesion and inter-group coordination. To mitigate communication redundancy and noise propagation inherent in expanding topologies, we further introduce a conditional information bottleneck (CIB) objective that compresses inter-group communication, preserving task-relevant signals while filtering out redundant historical noise. Extensive experiments on six benchmarks demonstrate the state-of-the-art performance of GoAgent with 93.84% average accuracy while reducing token consumption by about 17%.

Shuai Wang, Tengjin Weng, Jingyi Wang et al.

Medical image segmentation annotations exhibit variations among experts due to the ambiguous boundaries of segmented objects and backgrounds in medical images. Although using multiple annotations for each image in the fully-supervised has been extensively studied for training deep models, obtaining a large amount of multi-annotated data is challenging due to the substantial time and manpower costs required for segmentation annotations, resulting in most images lacking any annotations. To address this, we propose Multi-annotated Semi-supervised Ensemble Networks (MSE-Nets) for learning segmentation from limited multi-annotated and abundant unannotated data. Specifically, we introduce the Network Pairwise Consistency Enhancement (NPCE) module and Multi-Network Pseudo Supervised (MNPS) module to enhance MSE-Nets for the segmentation task by considering two major factors: (1) to optimize the utilization of all accessible multi-annotated data, the NPCE separates (dis)agreement annotations of multi-annotated data at the pixel level and handles agreement and disagreement annotations in different ways, (2) to mitigate the introduction of imprecise pseudo-labels, the MNPS extends the training data by leveraging consistent pseudo-labels from unannotated data. Finally, we improve confidence calibration by averaging the predictions of base networks. Experiments on the ISIC dataset show that we reduced the demand for multi-annotated data by 97.75\% and narrowed the gap with the best fully-supervised baseline to just a Jaccard index of 4\%. Furthermore, compared to other semi-supervised methods that rely only on a single annotation or a combined fusion approach, the comprehensive experimental results on ISIC and RIGA datasets demonstrate the superior performance of our proposed method in medical image segmentation with ambiguous boundaries.

Mengzhou Gao, Kaiwei Wang, Pengfei Jiao

Neural Flows efficiently model irregular multivariate time series by directly learning ODE solution trajectories with neural networks, bypassing step-by-step numerical solvers. Despite their efficiency, many existing approaches treat variables independently, leaving inter-variable interactions underexplored. Moreover, their one-step mapping makes interaction modeling inherently challenging, as it removes the iterative refinement of interactions during learning. To address this challenge, we propose one-step Graph-Structured Neural Flows (GSNF), which introduce two auxiliary-trajectory self-supervision strategies to strengthen interaction learning: (i) interaction-aware trajectory generation via re-initialization, which induces trajectory divergence to expose graph-induced interactions, with a theoretically derived lower bound on divergence; and (ii) reverse-time trajectory generation, which enforces forward-backward consistency to regularize graph learning, enabled by flow invertibility. Experiments on five real-world datasets show that GSNF achieves state-of-the-art classification performance with highly competitive training time and memory usage.

Xinxun Zhang, Pengfei Jiao, Mengzhou Gao et al.

Although dynamic graph neural networks (DyGNNs) have demonstrated promising capabilities, most existing methods ignore out-of-distribution (OOD) shifts that commonly exist in dynamic graphs. Dynamic graph OOD generalization is non-trivial due to the following challenges: 1) Identifying invariant and variant patterns amid complex graph evolution, 2) Capturing the intrinsic evolution rationale from these patterns, and 3) Ensuring model generalization across diverse OOD shifts despite limited data distribution observations. Although several attempts have been made to tackle these challenges, none has successfully addressed all three simultaneously, and they face various limitations in complex OOD scenarios. To solve these issues, we propose a Dynamic graph Causal Invariant Learning (DyCIL) model for OOD generalization via exploiting invariant spatio-temporal patterns from a causal view. Specifically, we first develop a dynamic causal subgraph generator to identify causal dynamic subgraphs explicitly. Next, we design a causal-aware spatio-temporal attention module to extract the intrinsic evolution rationale behind invariant patterns. Finally, we further introduce an adaptive environment generator to capture the underlying dynamics of distributional shifts. Extensive experiments on both real-world and synthetic dynamic graph datasets demonstrate the superiority of our model over state-of-the-art baselines in handling OOD shifts.

Zehao Liu, Mengzhou Gao, Pengfei Jiao

Multivariate time series anomaly detection has numerous real-world applications and is being extensively studied. Modeling pairwise correlations between variables is crucial. Existing methods employ learnable graph structures and graph neural networks to explicitly model the spatial dependencies between variables. However, these methods are primarily based on prediction or reconstruction tasks, which can only learn similarity relationships between sequence embeddings and lack interpretability in how graph structures affect time series evolution. In this paper, we designed a framework that models spatial dependencies using interpretable causal relationships and detects anomalies through changes in causal patterns. Specifically, we propose a method to dynamically discover Granger causality using gradients in nonlinear deep predictors and employ a simple sparsification strategy to obtain a Granger causality graph, detecting anomalies from a causal perspective. Experiments on real-world datasets demonstrate that the proposed model achieves more accurate anomaly detection compared to baseline methods.

Huan Liu, Pengfei Jiao, Mengzhou Gao et al.

Graph representation learning (GRL) has emerged as an effective technique for modeling graph-structured data. When modeling heterogeneity and dynamics in real-world complex networks, GRL methods designed for complex heterogeneous temporal graphs (HTGs) have been proposed and have achieved successful applications in various fields. However, most existing GRL methods mainly focus on preserving the low-order topology information while ignoring higher-order group interaction relationships, which are more consistent with real-world networks. In addition, most existing hypergraph methods can only model static homogeneous graphs, limiting their ability to model high-order interactions in HTGs. Therefore, to simultaneously enable the GRL model to capture high-order interaction relationships in HTGs, we first propose a formal definition of heterogeneous temporal hypergraphs and $P$-uniform heterogeneous hyperedge construction algorithm that does not rely on additional information. Then, a novel Heterogeneous Temporal HyperGraph Neural network (HTHGN), is proposed to fully capture higher-order interactions in HTGs. HTHGN contains a hierarchical attention mechanism module that simultaneously performs temporal message-passing between heterogeneous nodes and hyperedges to capture rich semantics in a wider receptive field brought by hyperedges. Furthermore, HTHGN performs contrastive learning by maximizing the consistency between low-order correlated heterogeneous node pairs on HTG to avoid the low-order structural ambiguity issue. Detailed experimental results on three real-world HTG datasets verify the effectiveness of the proposed HTHGN for modeling high-order interactions in HTGs and demonstrate significant performance improvements.

Yifan Lu, Ziyun Zou, Belal Alsinglawi et al.

Graph Transformers have recently achieved remarkable progress in graph representation learning by capturing long-range dependencies through self-attention. However, their quadratic computational complexity and inability to effectively model heterogeneous semantics severely limit their scalability and generalization on real-world heterogeneous graphs. To address these issues, we propose HeSRN, a novel Heterogeneous Slot-aware Retentive Network for efficient and expressive heterogeneous graph representation learning. HeSRN introduces a slot-aware structure encoder that explicitly disentangles node-type semantics by projecting heterogeneous features into independent slots and aligning their distributions through slot normalization and retention-based fusion, effectively mitigating the semantic entanglement caused by forced feature-space unification in previous Transformer-based models. Furthermore, we replace the self-attention mechanism with a retention-based encoder, which models structural and contextual dependencies in linear time complexity while maintaining strong expressive power. A heterogeneous retentive encoder is further employed to jointly capture both local structural signals and global heterogeneous semantics through multi-scale retention layers. Extensive experiments on four real-world heterogeneous graph datasets demonstrate that HeSRN consistently outperforms state-of-the-art heterogeneous graph neural networks and Graph Transformer baselines on node classification tasks, achieving superior accuracy with significantly lower computational complexity.

Pengfei Jiao, Jialong Ni, Di Jin et al.

The pre-training and fine-tuning methods have gained widespread attention in the field of heterogeneous graph neural networks due to their ability to leverage large amounts of unlabeled data during the pre-training phase, allowing the model to learn rich structural features. However, these methods face the issue of a mismatch between the pre-trained model and downstream tasks, leading to suboptimal performance in certain application scenarios. Prompt learning methods have emerged as a new direction in heterogeneous graph tasks, as they allow flexible adaptation of task representations to address target inconsistency. Building on this idea, this paper proposes a novel multi-task prompt framework for the heterogeneous graph domain, named HGMP. First, to bridge the gap between the pre-trained model and downstream tasks, we reformulate all downstream tasks into a unified graph-level task format. Next, we address the limitations of existing graph prompt learning methods, which struggle to integrate contrastive pre-training strategies in the heterogeneous graph domain. We design a graph-level contrastive pre-training strategy to better leverage heterogeneous information and enhance performance in multi-task scenarios. Finally, we introduce heterogeneous feature prompts, which enhance model performance by refining the representation of input graph features. Experimental results on public datasets show that our proposed method adapts well to various tasks and significantly outperforms baseline methods.

Yuling Wang, Zihui Chen, Pengfei Jiao et al.

Heterogeneous Graph Neural Networks (HGNNs) are vulnerable, highlighting the need for tailored attacks to assess their robustness and ensure security. However, existing HGNN attacks often require complex retraining of parameters to generate specific perturbations for new scenarios. Recently, foundation models have opened new horizons for the generalization of graph neural networks by capturing shared semantics across various graph distributions. This leads us to ask:Can we design a foundation attack model for HGNNs that enables generalizable perturbations across different HGNNs, and quickly adapts to new heterogeneous graphs (HGs)? Empirical findings reveal that, despite significant differences in model design and parameter space, different HGNNs surprisingly share common vulnerability patterns from a relation-aware perspective. Therefore, we explore how to design foundation HGNN attack criteria by mining shared attack units. In this paper, we propose a novel relation-wise heterogeneous graph foundation attack model, HeTa. We introduce a foundation surrogate model to align heterogeneity and identify the importance of shared relation-aware attack units. Building on this, we implement a serialized relation-by-relation attack based on the identified relational weights. In this way, the perturbation can be transferred to various target HGNNs and easily fine-tuned for new HGs. Extensive experiments exhibit powerful attack performances and generalizability of our method.

Pengfei Jiao, Hongjiang Chen, Xuan Guo et al.

Temporal interaction graphs (TIGs), defined by sequences of timestamped interaction events, have become ubiquitous in real-world applications due to their capability to model complex dynamic system behaviors. As a result, temporal interaction graph representation learning (TIGRL) has garnered significant attention in recent years. TIGRL aims to embed nodes in TIGs into low-dimensional representations that effectively preserve both structural and temporal information, thereby enhancing the performance of downstream tasks such as classification, prediction, and clustering within constantly evolving data environments. In this paper, we begin by introducing the foundational concepts of TIGs and emphasize the critical role of temporal dependencies. We then propose a comprehensive taxonomy of state-of-the-art TIGRL methods, systematically categorizing them based on the types of information utilized during the learning process to address the unique challenges inherent to TIGs. To facilitate further research and practical applications, we curate the source of datasets and benchmarks, providing valuable resources for empirical investigations. Finally, we examine key open challenges and explore promising research directions in TIGRL, laying the groundwork for future advancements that have the potential to shape the evolution of this field.

Xuan Guo, Pengfei Jiao, Ting Pan et al.

Capturing structural similarity has been a hot topic in the field of network embedding recently due to its great help in understanding the node functions and behaviors. However, existing works have paid very much attention to learning structures on homogeneous networks while the related study on heterogeneous networks is still a void. In this paper, we try to take the first step for representation learning on heterostructures, which is very challenging due to their highly diverse combinations of node types and underlying structures. To effectively distinguish diverse heterostructures, we firstly propose a theoretically guaranteed technique called heterogeneous anonymous walk (HAW) and its variant coarse HAW (CHAW). Then, we devise the heterogeneous anonymous walk embedding (HAWE) and its variant coarse HAWE in a data-driven manner to circumvent using an extremely large number of possible walks and train embeddings by predicting occurring walks in the neighborhood of each node. Finally, we design and apply extensive and illustrative experiments on synthetic and real-world networks to build a benchmark on heterostructure learning and evaluate the effectiveness of our methods. The results demonstrate our methods achieve outstanding performance compared with both homogeneous and heterogeneous classic methods, and can be applied on large-scale networks.

Dongxiao He, Chundong Liang, Huixin Liu et al.

Graph Convolutional Network (GCN) has shown remarkable potential of exploring graph representation. However, the GCN aggregating mechanism fails to generalize to networks with heterophily where most nodes have neighbors from different classes, which commonly exists in real-world networks. In order to make the propagation and aggregation mechanism of GCN suitable for both homophily and heterophily (or even their mixture), we introduce block modeling into the framework of GCN so that it can realize "block-guided classified aggregation", and automatically learn the corresponding aggregation rules for neighbors of different classes. By incorporating block modeling into the aggregation process, GCN is able to aggregate information from homophilic and heterophilic neighbors discriminately according to their homophily degree. We compared our algorithm with state-of-art methods which deal with the heterophily problem. Empirical results demonstrate the superiority of our new approach over existing methods in heterophilic datasets while maintaining a competitive performance in homophilic datasets.

Pengfei Jiao, Xuan Guo, Ting Pan et al.

Recently, Network Embedding (NE) has become one of the most attractive research topics in machine learning and data mining. NE approaches have achieved promising performance in various of graph mining tasks including link prediction and node clustering and classification. A wide variety of NE methods focus on the proximity of networks. They learn community-oriented embedding for each node, where the corresponding representations are similar if two nodes are closer to each other in the network. Meanwhile, there is another type of structural similarity, i.e., role-based similarity, which is usually complementary and completely different from the proximity. In order to preserve the role-based structural similarity, the problem of role-oriented NE is raised. However, compared to community-oriented NE problem, there are only a few role-oriented embedding approaches proposed recently. Although less explored, considering the importance of roles in analyzing networks and many applications that role-oriented NE can shed light on, it is necessary and timely to provide a comprehensive overview of existing role-oriented NE methods. In this review, we first clarify the differences between community-oriented and role-oriented network embedding. Afterwards, we propose a general framework for understanding role-oriented NE and a two-level categorization to better classify existing methods. Then, we select some representative methods according to the proposed categorization and briefly introduce them by discussing their motivation, development and differences. Moreover, we conduct comprehensive experiments to empirically evaluate these methods on a variety of role-related tasks including node classification and clustering (role discovery), top-k similarity search and visualization using some widely used synthetic and real-world datasets...

Di Jin, Zhizhi Yu, Pengfei Jiao et al.

Community detection, a fundamental task for network analysis, aims to partition a network into multiple sub-structures to help reveal their latent functions. Community detection has been extensively studied in and broadly applied to many real-world network problems. Classical approaches to community detection typically utilize probabilistic graphical models and adopt a variety of prior knowledge to infer community structures. As the problems that network methods try to solve and the network data to be analyzed become increasingly more sophisticated, new approaches have also been proposed and developed, particularly those that utilize deep learning and convert networked data into low dimensional representation. Despite all the recent advancement, there is still a lack of insightful understanding of the theoretical and methodological underpinning of community detection, which will be critically important for future development of the area of network analysis. In this paper, we develop and present a unified architecture of network community-finding methods to characterize the state-of-the-art of the field of community detection. Specifically, we provide a comprehensive review of the existing community detection methods and introduce a new taxonomy that divides the existing methods into two categories, namely probabilistic graphical model and deep learning. We then discuss in detail the main idea behind each method in the two categories. Furthermore, to promote future development of community detection, we release several benchmark datasets from several problem domains and highlight their applications to various network analysis tasks. We conclude with discussions of the challenges of the field and suggestions of possible directions for future research.

Hongtao Liu, Fangzhao Wu, Wenjun Wang et al.

Existing review-based recommendation methods usually use the same model to learn the representations of all users/items from reviews posted by users towards items. However, different users have different preference and different items have different characteristics. Thus, the same word or similar reviews may have different informativeness for different users and items. In this paper we propose a neural recommendation approach with personalized attention to learn personalized representations of users and items from reviews. We use a review encoder to learn representations of reviews from words, and a user/item encoder to learn representations of users or items from reviews. We propose a personalized attention model, and apply it to both review and user/item encoders to select different important words and reviews for different users/items. Experiments on five datasets validate our approach can effectively improve the performance of neural recommendation.