Trevor Campbell

Steven Winter, Trevor Campbell, Lizhen Lin et al.

Bayesian models are a powerful tool for studying complex data, allowing the analyst to encode rich hierarchical dependencies and leverage prior information. Most importantly, they facilitate a complete characterization of uncertainty through the posterior distribution. Practical posterior computation is commonly performed via MCMC, which can be computationally infeasible for high dimensional models with many observations. In this article we discuss the potential to improve posterior computation using ideas from machine learning. Concrete future directions are explored in vignettes on normalizing flows, Bayesian coresets, distributed Bayesian inference, and variational inference.

Cian Naik, Judith Rousseau, Trevor Campbell

Bayesian coresets approximate a posterior distribution by building a small weighted subset of the data points. Any inference procedure that is too computationally expensive to be run on the full posterior can instead be run inexpensively on the coreset, with results that approximate those on the full data. However, current approaches are limited by either a significant run-time or the need for the user to specify a low-cost approximation to the full posterior. We propose a Bayesian coreset construction algorithm that first selects a uniformly random subset of data, and then optimizes the weights using a novel quasi-Newton method. Our algorithm is a simple to implement, black-box method, that does not require the user to specify a low-cost posterior approximation. It is the first to come with a general high-probability bound on the KL divergence of the output coreset posterior. Experiments demonstrate that our method provides significant improvements in coreset quality against alternatives with comparable construction times, with far less storage cost and user input required.

Naitong Chen, Zuheng Xu, Trevor Campbell

A Bayesian coreset is a small, weighted subset of data that replaces the full dataset during Bayesian inference, with the goal of reducing computational cost. Although past work has shown empirically that there often exists a coreset with low inferential error, efficiently constructing such a coreset remains a challenge. Current methods tend to be slow, require a secondary inference step after coreset construction, and do not provide bounds on the data marginal evidence. In this work, we introduce a new method -- sparse Hamiltonian flows -- that addresses all three of these challenges. The method involves first subsampling the data uniformly, and then optimizing a Hamiltonian flow parametrized by coreset weights and including periodic momentum quasi-refreshment steps. Theoretical results show that the method enables an exponential compression of the dataset in a representative model, and that the quasi-refreshment steps reduce the KL divergence to the target. Real and synthetic experiments demonstrate that sparse Hamiltonian flows provide accurate posterior approximations with significantly reduced runtime compared with competing dynamical-system-based inference methods.

Zuheng Xu, Naitong Chen, Trevor Campbell

This work presents mixed variational flows (MixFlows), a new variational family that consists of a mixture of repeated applications of a map to an initial reference distribution. First, we provide efficient algorithms for i.i.d. sampling, density evaluation, and unbiased ELBO estimation. We then show that MixFlows have MCMC-like convergence guarantees when the flow map is ergodic and measure-preserving, and provide bounds on the accumulation of error for practical implementations where the flow map is approximated. Finally, we develop an implementation of MixFlows based on uncorrected discretized Hamiltonian dynamics combined with deterministic momentum refreshment. Simulated and real data experiments show that MixFlows can provide more reliable posterior approximations than several black-box normalizing flows, as well as samples of comparable quality to those obtained from state-of-the-art MCMC methods.

Berend Zwartsenberg, Adam Ścibior, Matthew Niedoba et al.

We present a novel, conditional generative probabilistic model of set-valued data with a tractable log density. This model is a continuous normalizing flow governed by permutation equivariant dynamics. These dynamics are driven by a learnable per-set-element term and pairwise interactions, both parametrized by deep neural networks. We illustrate the utility of this model via applications including (1) complex traffic scene generation conditioned on visually specified map information, and (2) object bounding box generation conditioned directly on images. We train our model by maximizing the expected likelihood of labeled conditional data under our flow, with the aid of a penalty that ensures the dynamics are smooth and hence efficiently solvable. Our method significantly outperforms non-permutation invariant baselines in terms of log likelihood and domain-specific metrics (offroad, collision, and combined infractions), yielding realistic samples that are difficult to distinguish from real data.

Zuheng Xu, Trevor Campbell

In this paper, we investigate the impact of numerical instability on the reliability of sampling, density evaluation, and evidence lower bound (ELBO) estimation in variational flows. We first empirically demonstrate that common flows can exhibit a catastrophic accumulation of error: the numerical flow map deviates significantly from the exact map -- which affects sampling -- and the numerical inverse flow map does not accurately recover the initial input -- which affects density and ELBO computations. Surprisingly though, we find that results produced by flows are often accurate enough for applications despite the presence of serious numerical instability. In this work, we treat variational flows as dynamical systems, and leverage shadowing theory to elucidate this behavior via theoretical guarantees on the error of sampling, density evaluation, and ELBO estimation. Finally, we develop and empirically test a diagnostic procedure that can be used to validate results produced by numerically unstable flows in practice.

Gian Carlo Diluvi, Benjamin Bloem-Reddy, Trevor Campbell

Variational flows allow practitioners to learn complex continuous distributions, but approximating discrete distributions remains a challenge. Current methodologies typically embed the discrete target in a continuous space - usually via continuous relaxation or dequantization - and then apply a continuous flow. These approaches involve a surrogate target that may not capture the original discrete target, might have biased or unstable gradients, and can create a difficult optimization problem. In this work, we develop a variational flow family for discrete distributions without any continuous embedding. First, we develop a measure-preserving and discrete (MAD) invertible map that leaves the discrete target invariant, and then create a mixed variational flow (MAD Mix) based on that map. Our family provides access to i.i.d. sampling and density evaluation with virtually no tuning effort. We also develop an extension to MAD Mix that handles joint discrete and continuous models. Our experiments suggest that MAD Mix produces more reliable approximations than continuous-embedding flows while being significantly faster to train.

Tiange Liu, Nikola Surjanovic, Miguel Biron-Lattes et al.

Many common Markov chain Monte Carlo (MCMC) kernels can be formulated using a deterministic involutive proposal with a step size parameter. Selecting an appropriate step size is often a challenging task in practice; and for complex multiscale targets, there may not be one choice of step size that works well globally. In this work, we address this problem with a novel class of involutive MCMC methods -- AutoStep MCMC -- that selects an appropriate step size at each iteration adapted to the local geometry of the target distribution. We prove that under mild conditions AutoStep MCMC is $π$-invariant, irreducible, and aperiodic, and obtain bounds on expected energy jump distance and cost per iteration. Empirical results examine the robustness and efficacy of our proposed step size selection procedure, and show that AutoStep MCMC is competitive with state-of-the-art methods in terms of effective sample size per unit cost on a range of challenging target distributions.

Kyurae Kim, Zuheng Xu, Jacob R. Gardner et al.

The performance of sequential Monte Carlo (SMC) samplers heavily depends on the tuning of the Markov kernels used in the path proposal. For SMC samplers with unadjusted Markov kernels, standard tuning objectives, such as the Metropolis-Hastings acceptance rate or the expected-squared jump distance, are no longer applicable. While stochastic gradient-based end-to-end optimization has been explored for tuning SMC samplers, they often incur excessive training costs, even for tuning just the kernel step sizes. In this work, we propose a general adaptation framework for tuning the Markov kernels in SMC samplers by minimizing the incremental Kullback-Leibler (KL) divergence between the proposal and target paths. For step size tuning, we provide a gradient- and tuning-free algorithm that is generally applicable for kernels such as Langevin Monte Carlo (LMC). We further demonstrate the utility of our approach by providing a tailored scheme for tuning kinetic LMC used in SMC samplers. Our implementations are able to obtain a full schedule of tuned parameters at the cost of a few vanilla SMC runs, which is a fraction of gradient-based approaches.

Trevor Campbell

Bayesian coresets speed up posterior inference in the large-scale data regime by approximating the full-data log-likelihood function with a surrogate log-likelihood based on a small, weighted subset of the data. But while Bayesian coresets and methods for construction are applicable in a wide range of models, existing theoretical analysis of the posterior inferential error incurred by coreset approximations only apply in restrictive settings -- i.e., exponential family models, or models with strong log-concavity and smoothness assumptions. This work presents general upper and lower bounds on the Kullback-Leibler (KL) divergence of coreset approximations that reflect the full range of applicability of Bayesian coresets. The lower bounds require only mild model assumptions typical of Bayesian asymptotic analyses, while the upper bounds require the log-likelihood functions to satisfy a generalized subexponentiality criterion that is weaker than conditions used in earlier work. The lower bounds are applied to obtain fundamental limitations on the quality of coreset approximations, and to provide a theoretical explanation for the previously-observed poor empirical performance of importance sampling-based construction methods. The upper bounds are used to analyze the performance of recent subsample-optimize methods. The flexibility of the theory is demonstrated in validation experiments involving multimodal, unidentifiable, heavy-tailed Bayesian posterior distributions.

Nikola Surjanovic, Alexandre Bouchard-Côté, Trevor Campbell

The learning rate is an important tuning parameter for stochastic gradient descent (SGD) and can greatly influence its performance. However, appropriate selection of a learning rate schedule across all iterations typically requires a non-trivial amount of user tuning effort. To address this, we introduce AutoSGD: an SGD method that automatically determines whether to increase or decrease the learning rate at a given iteration and then takes appropriate action. We introduce theory supporting the convergence of AutoSGD, along with its deterministic counterpart for standard gradient descent. Empirical results suggest strong performance of the method on a variety of traditional optimization problems and machine learning tasks.

Kyurae Kim, Qiang Fu, Yi-An Ma et al.

For approximating a target distribution given only its unnormalized log-density, stochastic gradient-based variational inference (VI) algorithms are a popular approach. For example, Wasserstein VI (WVI) and black-box VI (BBVI) perform gradient descent in measure space (Bures-Wasserstein space) and parameter space, respectively. Previously, for the Gaussian variational family, convergence guarantees for WVI have shown superiority over existing results for black-box VI with the reparametrization gradient, suggesting the measure space approach might provide some unique benefits. In this work, however, we close this gap by obtaining identical state-of-the-art iteration complexity guarantees for both. In particular, we identify that WVI's superiority stems from the specific gradient estimator it uses, which BBVI can also leverage with minor modifications. The estimator in question is usually associated with Price's theorem and utilizes second-order information (Hessians) of the target log-density. We will refer to this as Price's gradient. On the flip side, WVI can be made more widely applicable by using the reparametrization gradient, which requires only gradients of the log-density. We empirically demonstrate that the use of Price's gradient is the major source of performance improvement.

Nikola Surjanovic, Alexandre Bouchard-Côté, Trevor Campbell

The performance of gradient-based optimization methods, such as standard gradient descent (GD), greatly depends on the choice of learning rate. However, it can require a non-trivial amount of user tuning effort to select an appropriate learning rate schedule. When such methods appear as inner loops of other algorithms, expecting the user to tune the learning rates may be impractical. To address this, we introduce AutoGD: a gradient descent method that automatically determines whether to increase or decrease the learning rate at a given iteration. We establish the convergence of AutoGD, and show that we can recover the optimal rate of GD (up to a constant) for a broad class of functions without knowledge of smoothness constants. Experiments on a variety of traditional problems and variational inference optimization tasks demonstrate strong performance of the method, along with its extensions to AutoBFGS and AutoLBFGS.

Kyurae Kim, Yi-An Ma, Trevor Campbell et al.

We prove that, given a mean-field location-scale variational family, black-box variational inference (BBVI) with the reparametrization gradient converges at a rate that is nearly independent of explicit dimension dependence. Specifically, for a $d$-dimensional strongly log-concave and log-smooth target, the number of iterations for BBVI with a sub-Gaussian family to obtain a solution $ε$-close to the global optimum has a dimension dependence of $\mathrm{O}(\log d)$. This is a significant improvement over the $\mathrm{O}(d)$ dependence of full-rank location-scale families. For heavy-tailed families, we prove a weaker $\mathrm{O}(d^{2/k})$ dependence, where $k$ is the number of finite moments of the family. Additionally, if the Hessian of the target log-density is constant, the complexity is free of any explicit dimension dependence. We also prove that our bound on the gradient variance, which is key to our result, cannot be improved using only spectral bounds on the Hessian of the target log-density.

Naitong Chen, Jonathan H. Huggins, Trevor Campbell

A Bayesian coreset is a small, weighted subset of a data set that replaces the full data during inference to reduce computational cost. The state-of-the-art coreset construction algorithm, Coreset Markov chain Monte Carlo (Coreset MCMC), uses draws from an adaptive Markov chain targeting the coreset posterior to train the coreset weights via stochastic gradient optimization. However, the quality of the constructed coreset, and thus the quality of its posterior approximation, is sensitive to the stochastic optimization learning rate. In this work, we propose a learning-rate-free stochastic gradient optimization procedure, Hot-start Distance over Gradient (Hot DoG), for training coreset weights in Coreset MCMC without user tuning effort. We provide a theoretical analysis of the convergence of the coreset weights produced by Hot DoG. We also provide empirical results demonstrate that Hot DoG provides higher quality posterior approximations than other learning-rate-free stochastic gradient methods, and performs competitively to optimally-tuned ADAM.

Alexandre Bouchard-Côté, Trevor Campbell, Geoff Pleiss et al.

This paper is intended to appear as a chapter for the Handbook of Markov Chain Monte Carlo. The goal of this chapter is to unify various problems at the intersection of Markov chain Monte Carlo (MCMC) and machine learning$\unicode{x2014}$which includes black-box variational inference, adaptive MCMC, normalizing flow construction and transport-assisted MCMC, surrogate-likelihood MCMC, coreset construction for MCMC with big data, Markov chain gradient descent, Markovian score climbing, and more$\unicode{x2014}$within one common framework. By doing so, the theory and methods developed for each may be translated and generalized.

Zuheng Xu, Trevor Campbell

Gaussian variational inference and the Laplace approximation are popular alternatives to Markov chain Monte Carlo that formulate Bayesian posterior inference as an optimization problem, enabling the use of simple and scalable stochastic optimization algorithms. However, a key limitation of both methods is that the solution to the optimization problem is typically not tractable to compute; even in simple settings the problem is nonconvex. Thus, recently developed statistical guarantees -- which all involve the (data) asymptotic properties of the global optimum -- are not reliably obtained in practice. In this work, we provide two major contributions: a theoretical analysis of the asymptotic convexity properties of variational inference with a Gaussian family and the maximum a posteriori (MAP) problem required by the Laplace approximation; and two algorithms -- consistent Laplace approximation (CLA) and consistent stochastic variational inference (CSVI) -- that exploit these properties to find the optimal approximation in the asymptotic regime. Both CLA and CSVI involve a tractable initialization procedure that finds the local basin of the optimum, and CSVI further includes a scaled gradient descent algorithm that provably stays locally confined to that basin. Experiments on nonconvex synthetic and real-data examples show that compared with standard variational and Laplace approximations, both CSVI and CLA improve the likelihood of obtaining the global optimum of their respective optimization problems.

Sina Amini Niaki, Ehsan Haghighat, Trevor Campbell et al.

We present a Physics-Informed Neural Network (PINN) to simulate the thermochemical evolution of a composite material on a tool undergoing cure in an autoclave. In particular, we solve the governing coupled system of differential equations -- including conductive heat transfer and resin cure kinetics -- by optimizing the parameters of a deep neural network (DNN) using a physics-based loss function. To account for the vastly different behaviour of thermal conduction and resin cure, we design a PINN consisting of two disconnected subnetworks, and develop a sequential training algorithm that mitigates instability present in traditional training methods. Further, we incorporate explicit discontinuities into the DNN at the composite-tool interface and enforce known physical behaviour directly in the loss function to improve the solution near the interface. We train the PINN with a technique that automatically adapts the weights on the loss terms corresponding to PDE, boundary, interface, and initial conditions. Finally, we demonstrate that one can include problem parameters as an input to the model -- resulting in a surrogate that provides real-time simulation for a range of problem settings -- and that one can use transfer learning to significantly reduce the training time for problem settings similar to that of an initial trained model. The performance of the proposed PINN is demonstrated in multiple scenarios with different material thicknesses and thermal boundary conditions.

Diana Cai, Trevor Campbell, Tamara Broderick

Scientists and engineers are often interested in learning the number of subpopulations (or components) present in a data set. A common suggestion is to use a finite mixture model (FMM) with a prior on the number of components. Past work has shown the resulting FMM component-count posterior is consistent; that is, the posterior concentrates on the true, generating number of components. But consistency requires the assumption that the component likelihoods are perfectly specified, which is unrealistic in practice. In this paper, we add rigor to data-analysis folk wisdom by proving that under even the slightest model misspecification, the FMM component-count posterior diverges: the posterior probability of any particular finite number of components converges to 0 in the limit of infinite data. Contrary to intuition, posterior-density consistency is not sufficient to establish this result. We develop novel sufficient conditions that are more realistic and easily checkable than those common in the asymptotics literature. We illustrate practical consequences of our theory on simulated and real data.

Peiyuan Zhu, Alexandre Bouchard-Côté, Trevor Campbell

Completely random measures provide a principled approach to creating flexible unsupervised models, where the number of latent features is infinite and the number of features that influence the data grows with the size of the data set. Due to the infinity the latent features, posterior inference requires either marginalization---resulting in dependence structures that prevent efficient computation via parallelization and conjugacy---or finite truncation, which arbitrarily limits the flexibility of the model. In this paper we present a novel Markov chain Monte Carlo algorithm for posterior inference that adaptively sets the truncation level using auxiliary slice variables, enabling efficient, parallelized computation without sacrificing flexibility. In contrast to past work that achieved this on a model-by-model basis, we provide a general recipe that is applicable to the broad class of completely random measure-based priors. The efficacy of the proposed algorithm is evaluated on several popular nonparametric models, demonstrating a higher effective sample size per second compared to algorithms using marginalization as well as a higher predictive performance compared to models employing fixed truncations.

Jonathan H. Huggins, Mikołaj Kasprzak, Trevor Campbell et al.

Variational inference has become an increasingly attractive fast alternative to Markov chain Monte Carlo methods for approximate Bayesian inference. However, a major obstacle to the widespread use of variational methods is the lack of post-hoc accuracy measures that are both theoretically justified and computationally efficient. In this paper, we provide rigorous bounds on the error of posterior mean and uncertainty estimates that arise from full-distribution approximations, as in variational inference. Our bounds are widely applicable, as they require only that the approximating and exact posteriors have polynomial moments. Our bounds are also computationally efficient for variational inference because they require only standard values from variational objectives, straightforward analytic calculations, and simple Monte Carlo estimates. We show that our analysis naturally leads to a new and improved workflow for validated variational inference. Finally, we demonstrate the utility of our proposed workflow and error bounds on a robust regression problem and on a real-data example with a widely used multilevel hierarchical model.

Trevor Campbell, Boyan Beronov

The proliferation of automated inference algorithms in Bayesian statistics has provided practitioners newfound access to fast, reproducible data analysis and powerful statistical models. Designing automated methods that are also both computationally scalable and theoretically sound, however, remains a significant challenge. Recent work on Bayesian coresets takes the approach of compressing the dataset before running a standard inference algorithm, providing both scalability and guarantees on posterior approximation error. But the automation of past coreset methods is limited because they depend on the availability of a reasonable coarse posterior approximation, which is difficult to specify in practice. In the present work we remove this requirement by formulating coreset construction as sparsity-constrained variational inference within an exponential family. This perspective leads to a novel construction via greedy optimization, and also provides a unifying information-geometric view of present and past methods. The proposed Riemannian coreset construction algorithm is fully automated, requiring no problem-specific inputs aside from the probabilistic model and dataset. In addition to being significantly easier to use than past methods, experiments demonstrate that past coreset constructions are fundamentally limited by the fixed coarse posterior approximation; in contrast, the proposed algorithm is able to continually improve the coreset, providing state-of-the-art Bayesian dataset summarization with orders-of-magnitude reduction in KL divergence to the exact posterior.

Trevor Campbell, Xinglong Li

Boosting variational inference (BVI) approximates an intractable probability density by iteratively building up a mixture of simple component distributions one at a time, using techniques from sparse convex optimization to provide both computational scalability and approximation error guarantees. But the guarantees have strong conditions that do not often hold in practice, resulting in degenerate component optimization problems; and we show that the ad-hoc regularization used to prevent degeneracy in practice can cause BVI to fail in unintuitive ways. We thus develop universal boosting variational inference (UBVI), a BVI scheme that exploits the simple geometry of probability densities under the Hellinger metric to prevent the degeneracy of other gradient-based BVI methods, avoid difficult joint optimizations of both component and weight, and simplify fully-corrective weight optimizations. We show that for any target density and any mixture component family, the output of UBVI converges to the best possible approximation in the mixture family, even when the mixture family is misspecified. We develop a scalable implementation based on exponential family mixture components and standard stochastic optimization techniques. Finally, we discuss statistical benefits of the Hellinger distance as a variational objective through bounds on posterior probability, moment, and importance sampling errors. Experiments on multiple datasets and models show that UBVI provides reliable, accurate posterior approximations.

Miriam Shiffman, William T. Stephenson, Geoffrey Schiebinger et al.

Until recently, transcriptomics was limited to bulk RNA sequencing, obscuring the underlying expression patterns of individual cells in favor of a global average. Thanks to technological advances, we can now profile gene expression across thousands or millions of individual cells in parallel. This new type of data has led to the intriguing discovery that individual cell profiles can reflect the imprint of time or dynamic processes. However, synthesizing this information to reconstruct dynamic biological phenomena from data that are noisy, heterogenous, and sparse---and from processes that may unfold asynchronously---poses a complex computational and statistical challenge. Here, we develop a full generative model for probabilistically reconstructing trees of cellular differentiation from single-cell RNA-seq data. Specifically, we extend the framework of the classical Dirichlet diffusion tree to simultaneously infer branch topology and latent cell states along continuous trajectories over the full tree. In tandem, we construct a novel Markov chain Monte Carlo sampler that interleaves Metropolis-Hastings and message passing to leverage model structure for efficient inference. Finally, we demonstrate that these techniques can recover latent trajectories from simulated single-cell transcriptomes. While this work is motivated by cellular differentiation, we derive a tractable model that provides flexible densities for any data (coupled with an appropriate noise model) that arise from continuous evolution along a latent nonparametric tree.

Raj Agrawal, Trevor Campbell, Jonathan H. Huggins et al.

Kernel methods offer the flexibility to learn complex relationships in modern, large data sets while enjoying strong theoretical guarantees on quality. Unfortunately, these methods typically require cubic running time in the data set size, a prohibitive cost in the large-data setting. Random feature maps (RFMs) and the Nystrom method both consider low-rank approximations to the kernel matrix as a potential solution. But, in order to achieve desirable theoretical guarantees, the former may require a prohibitively large number of features J+, and the latter may be prohibitively expensive for high-dimensional problems. We propose to combine the simplicity and generality of RFMs with a data-dependent feature selection scheme to achieve desirable theoretical approximation properties of Nystrom with just O(log J+) features. Our key insight is to begin with a large set of random features, then reduce them to a small number of weighted features in a data-dependent, computationally efficient way, while preserving the statistical guarantees of using the original large set of features. We demonstrate the efficacy of our method with theory and experiments--including on a data set with over 50 million observations. In particular, we show that our method achieves small kernel matrix approximation error and better test set accuracy with provably fewer random features than state-of-the-art methods.

Jonathan H. Huggins, Trevor Campbell, Mikołaj Kasprzak et al.

Bayesian inference typically requires the computation of an approximation to the posterior distribution. An important requirement for an approximate Bayesian inference algorithm is to output high-accuracy posterior mean and uncertainty estimates. Classical Monte Carlo methods, particularly Markov Chain Monte Carlo, remain the gold standard for approximate Bayesian inference because they have a robust finite-sample theory and reliable convergence diagnostics. However, alternative methods, which are more scalable or apply to problems where Markov Chain Monte Carlo cannot be used, lack the same finite-data approximation theory and tools for evaluating their accuracy. In this work, we develop a flexible new approach to bounding the error of mean and uncertainty estimates of scalable inference algorithms. Our strategy is to control the estimation errors in terms of Wasserstein distance, then bound the Wasserstein distance via a generalized notion of Fisher distance. Unlike computing the Wasserstein distance, which requires access to the normalized posterior distribution, the Fisher distance is tractable to compute because it requires access only to the gradient of the log posterior density. We demonstrate the usefulness of our Fisher distance approach by deriving bounds on the Wasserstein error of the Laplace approximation and Hilbert coresets. We anticipate that our approach will be applicable to many other approximate inference methods such as the integrated Laplace approximation, variational inference, and approximate Bayesian computation

Jonathan H. Huggins, Trevor Campbell, Mikołaj Kasprzak et al.

Gaussian processes (GPs) offer a flexible class of priors for nonparametric Bayesian regression, but popular GP posterior inference methods are typically prohibitively slow or lack desirable finite-data guarantees on quality. We develop an approach to scalable approximate GP regression with finite-data guarantees on the accuracy of pointwise posterior mean and variance estimates. Our main contribution is a novel objective for approximate inference in the nonparametric setting: the preconditioned Fisher (pF) divergence. We show that unlike the Kullback--Leibler divergence (used in variational inference), the pF divergence bounds the 2-Wasserstein distance, which in turn provides tight bounds the pointwise difference of the mean and variance functions. We demonstrate that, for sparse GP likelihood approximations, we can minimize the pF divergence efficiently. Our experiments show that optimizing the pF divergence has the same computational requirements as variational sparse GPs while providing comparable empirical performance--in addition to our novel finite-data quality guarantees.

Trevor Campbell, Tamara Broderick

Coherent uncertainty quantification is a key strength of Bayesian methods. But modern algorithms for approximate Bayesian posterior inference often sacrifice accurate posterior uncertainty estimation in the pursuit of scalability. This work shows that previous Bayesian coreset construction algorithms---which build a small, weighted subset of the data that approximates the full dataset---are no exception. We demonstrate that these algorithms scale the coreset log-likelihood suboptimally, resulting in underestimated posterior uncertainty. To address this shortcoming, we develop greedy iterative geodesic ascent (GIGA), a novel algorithm for Bayesian coreset construction that scales the coreset log-likelihood optimally. GIGA provides geometric decay in posterior approximation error as a function of coreset size, and maintains the fast running time of its predecessors. The paper concludes with validation of GIGA on both synthetic and real datasets, demonstrating that it reduces posterior approximation error by orders of magnitude compared with previous coreset constructions.

Trevor Campbell, Tamara Broderick

The automation of posterior inference in Bayesian data analysis has enabled experts and nonexperts alike to use more sophisticated models, engage in faster exploratory modeling and analysis, and ensure experimental reproducibility. However, standard automated posterior inference algorithms are not tractable at the scale of massive modern datasets, and modifications to make them so are typically model-specific, require expert tuning, and can break theoretical guarantees on inferential quality. Building on the Bayesian coresets framework, this work instead takes advantage of data redundancy to shrink the dataset itself as a preprocessing step, providing fully-automated, scalable Bayesian inference with theoretical guarantees. We begin with an intuitive reformulation of Bayesian coreset construction as sparse vector sum approximation, and demonstrate that its automation and performance-based shortcomings arise from the use of the supremum norm. To address these shortcomings we develop Hilbert coresets, i.e., Bayesian coresets constructed under a norm induced by an inner-product on the log-likelihood function space. We propose two Hilbert coreset construction algorithms---one based on importance sampling, and one based on the Frank-Wolfe algorithm---along with theoretical guarantees on approximation quality as a function of coreset size. Since the exact computation of the proposed inner-products is model-specific, we automate the construction with a random finite-dimensional projection of the log-likelihood functions. The resulting automated coreset construction algorithm is simple to implement, and experiments on a variety of models with real and synthetic datasets show that it provides high-quality posterior approximations and a significant reduction in the computational cost of inference.

Trevor Campbell, Brian Kulis, Jonathan How

Bayesian nonparametrics are a class of probabilistic models in which the model size is inferred from data. A recently developed methodology in this field is small-variance asymptotic analysis, a mathematical technique for deriving learning algorithms that capture much of the flexibility of Bayesian nonparametric inference algorithms, but are simpler to implement and less computationally expensive. Past work on small-variance analysis of Bayesian nonparametric inference algorithms has exclusively considered batch models trained on a single, static dataset, which are incapable of capturing time evolution in the latent structure of the data. This work presents a small-variance analysis of the maximum a posteriori filtering problem for a temporally varying mixture model with a Markov dependence structure, which captures temporally evolving clusters within a dataset. Two clustering algorithms result from the analysis: D-Means, an iterative clustering algorithm for linearly separable, spherical clusters; and SD-Means, a spectral clustering algorithm derived from a kernelized, relaxed version of the clustering problem. Empirical results from experiments demonstrate the advantages of using D-Means and SD-Means over contemporary clustering algorithms, in terms of both computational cost and clustering accuracy.

Diana Cai, Trevor Campbell, Tamara Broderick

Many popular network models rely on the assumption of (vertex) exchangeability, in which the distribution of the graph is invariant to relabelings of the vertices. However, the Aldous-Hoover theorem guarantees that these graphs are dense or empty with probability one, whereas many real-world graphs are sparse. We present an alternative notion of exchangeability for random graphs, which we call edge exchangeability, in which the distribution of a graph sequence is invariant to the order of the edges. We demonstrate that edge-exchangeable models, unlike models that are traditionally vertex exchangeable, can exhibit sparsity. To do so, we outline a general framework for graph generative models; by contrast to the pioneering work of Caron and Fox (2015), models within our framework are stationary across steps of the graph sequence. In particular, our model grows the graph by instantiating more latent atoms of a single random measure as the dataset size increases, rather than adding new atoms to the measure.

Julian Straub, Trevor Campbell, Jonathan P. How et al.

Structural regularities in man-made environments reflect in the distribution of their surface normals. Describing these surface normal distributions is important in many computer vision applications, such as scene understanding, plane segmentation, and regularization of 3D reconstructions. Based on the small-variance limit of Bayesian nonparametric von-Mises-Fisher (vMF) mixture distributions, we propose two new flexible and efficient k-means-like clustering algorithms for directional data such as surface normals. The first, DP-vMF-means, is a batch clustering algorithm derived from the Dirichlet process (DP) vMF mixture. Recognizing the sequential nature of data collection in many applications, we extend this algorithm to DDP-vMF-means, which infers temporally evolving cluster structure from streaming data. Both algorithms naturally respect the geometry of directional data, which lies on the unit sphere. We demonstrate their performance on synthetic directional data and real 3D surface normals from RGB-D sensors. While our experiments focus on 3D data, both algorithms generalize to high dimensional directional data such as protein backbone configurations and semantic word vectors.

Jonathan H. Huggins, Trevor Campbell, Tamara Broderick

The use of Bayesian methods in large-scale data settings is attractive because of the rich hierarchical models, uncertainty quantification, and prior specification they provide. Standard Bayesian inference algorithms are computationally expensive, however, making their direct application to large datasets difficult or infeasible. Recent work on scaling Bayesian inference has focused on modifying the underlying algorithms to, for example, use only a random data subsample at each iteration. We leverage the insight that data is often redundant to instead obtain a weighted subset of the data (called a coreset) that is much smaller than the original dataset. We can then use this small coreset in any number of existing posterior inference algorithms without modification. In this paper, we develop an efficient coreset construction algorithm for Bayesian logistic regression models. We provide theoretical guarantees on the size and approximation quality of the coreset -- both for fixed, known datasets, and in expectation for a wide class of data generative models. Crucially, the proposed approach also permits efficient construction of the coreset in both streaming and parallel settings, with minimal additional effort. We demonstrate the efficacy of our approach on a number of synthetic and real-world datasets, and find that, in practice, the size of the coreset is independent of the original dataset size. Furthermore, constructing the coreset takes a negligible amount of time compared to that required to run MCMC on it.

Julian Straub, Trevor Campbell, Jonathan P. How et al.

Point cloud alignment is a common problem in computer vision and robotics, with applications ranging from 3D object recognition to reconstruction. We propose a novel approach to the alignment problem that utilizes Bayesian nonparametrics to describe the point cloud and surface normal densities, and branch and bound (BB) optimization to recover the relative transformation. BB uses a novel, refinable, near-uniform tessellation of rotation space using 4D tetrahedra, leading to more efficient optimization compared to the common axis-angle tessellation. We provide objective function bounds for pruning given the proposed tessellation, and prove that BB converges to the optimum of the cost function along with providing its computational complexity. Finally, we empirically demonstrate the efficiency of the proposed approach as well as its robustness to real-world conditions such as missing data and partial overlap.

Trevor Campbell, Julian Straub, John W. Fisher et al.

This paper presents a methodology for creating streaming, distributed inference algorithms for Bayesian nonparametric (BNP) models. In the proposed framework, processing nodes receive a sequence of data minibatches, compute a variational posterior for each, and make asynchronous streaming updates to a central model. In contrast to previous algorithms, the proposed framework is truly streaming, distributed, asynchronous, learning-rate-free, and truncation-free. The key challenge in developing the framework, arising from the fact that BNP models do not impose an inherent ordering on their components, is finding the correspondence between minibatch and central BNP posterior components before performing each update. To address this, the paper develops a combinatorial optimization problem over component correspondences, and provides an efficient solution technique. The paper concludes with an application of the methodology to the DP mixture model, with experimental results demonstrating its practical scalability and performance.

Trevor Campbell, Jonathan P. How

This paper presents an approximate method for performing Bayesian inference in models with conditional independence over a decentralized network of learning agents. The method first employs variational inference on each individual learning agent to generate a local approximate posterior, the agents transmit their local posteriors to other agents in the network, and finally each agent combines its set of received local posteriors. The key insight in this work is that, for many Bayesian models, approximate inference schemes destroy symmetry and dependencies in the model that are crucial to the correct application of Bayes' rule when combining the local posteriors. The proposed method addresses this issue by including an additional optimization step in the combination procedure that accounts for these broken dependencies. Experiments on synthetic and real data demonstrate that the decentralized method provides advantages in computational performance and predictive test likelihood over previous batch and distributed methods.

Trevor Campbell, Miao Liu, Brian Kulis et al.

This paper presents a novel algorithm, based upon the dependent Dirichlet process mixture model (DDPMM), for clustering batch-sequential data containing an unknown number of evolving clusters. The algorithm is derived via a low-variance asymptotic analysis of the Gibbs sampling algorithm for the DDPMM, and provides a hard clustering with convergence guarantees similar to those of the k-means algorithm. Empirical results from a synthetic test with moving Gaussian clusters and a test with real ADS-B aircraft trajectory data demonstrate that the algorithm requires orders of magnitude less computational time than contemporary probabilistic and hard clustering algorithms, while providing higher accuracy on the examined datasets.