METS-CoV: A Dataset of Medical Entity and Targeted Sentiment on COVID-19 Related TweetsPeilin Zhou, Zeqiang Wang, Dading Chong et al. · bytedance, harvard
The COVID-19 pandemic continues to bring up various topics discussed or debated on social media. In order to explore the impact of pandemics on people's lives, it is crucial to understand the public's concerns and attitudes towards pandemic-related entities (e.g., drugs, vaccines) on social media. However, models trained on existing named entity recognition (NER) or targeted sentiment analysis (TSA) datasets have limited ability to understand COVID-19-related social media texts because these datasets are not designed or annotated from a medical perspective. This paper releases METS-CoV, a dataset containing medical entities and targeted sentiments from COVID-19-related tweets. METS-CoV contains 10,000 tweets with 7 types of entities, including 4 medical entity types (Disease, Drug, Symptom, and Vaccine) and 3 general entity types (Person, Location, and Organization). To further investigate tweet users' attitudes toward specific entities, 4 types of entities (Person, Organization, Drug, and Vaccine) are selected and annotated with user sentiments, resulting in a targeted sentiment dataset with 9,101 entities (in 5,278 tweets). To the best of our knowledge, METS-CoV is the first dataset to collect medical entities and corresponding sentiments of COVID-19-related tweets. We benchmark the performance of classical machine learning models and state-of-the-art deep learning models on NER and TSA tasks with extensive experiments. Results show that the dataset has vast room for improvement for both NER and TSA tasks. METS-CoV is an important resource for developing better medical social media tools and facilitating computational social science research, especially in epidemiology. Our data, annotation guidelines, benchmark models, and source code are publicly available (https://github.com/YLab-Open/METS-CoV) to ensure reproducibility.
Benchmarking Large Language Models on CMExam -- A Comprehensive Chinese Medical Exam DatasetJunling Liu, Peilin Zhou, Yining Hua et al.
Recent advancements in large language models (LLMs) have transformed the field of question answering (QA). However, evaluating LLMs in the medical field is challenging due to the lack of standardized and comprehensive datasets. To address this gap, we introduce CMExam, sourced from the Chinese National Medical Licensing Examination. CMExam consists of 60K+ multiple-choice questions for standardized and objective evaluations, as well as solution explanations for model reasoning evaluation in an open-ended manner. For in-depth analyses of LLMs, we invited medical professionals to label five additional question-wise annotations, including disease groups, clinical departments, medical disciplines, areas of competency, and question difficulty levels. Alongside the dataset, we further conducted thorough experiments with representative LLMs and QA algorithms on CMExam. The results show that GPT-4 had the best accuracy of 61.6% and a weighted F1 score of 0.617. These results highlight a great disparity when compared to human accuracy, which stood at 71.6%. For explanation tasks, while LLMs could generate relevant reasoning and demonstrate improved performance after finetuning, they fall short of a desired standard, indicating ample room for improvement. To the best of our knowledge, CMExam is the first Chinese medical exam dataset to provide comprehensive medical annotations. The experiments and findings of LLM evaluation also provide valuable insights into the challenges and potential solutions in developing Chinese medical QA systems and LLM evaluation pipelines. The dataset and relevant code are available at https://github.com/williamliujl/CMExam.
GreenPLM: Cross-Lingual Transfer of Monolingual Pre-Trained Language Models at Almost No CostQingcheng Zeng, Lucas Garay, Peilin Zhou et al. · cambridge, harvard
Large pre-trained models have revolutionized natural language processing (NLP) research and applications, but high training costs and limited data resources have prevented their benefits from being shared equally amongst speakers of all the world's languages. To address issues of cross-linguistic access to such models and reduce energy consumption for sustainability during large-scale model training, this study proposes an effective and energy-efficient framework called GreenPLM that uses bilingual lexicons to directly "translate" pre-trained language models of one language into another at almost no additional cost. We validate this approach in 18 languages' BERT models and show that this framework is comparable to, if not better than, other heuristics with high training costs. In addition, given lightweight continued pre-training on limited data where available, this framework outperforms the original monolingual language models in six out of seven tested languages with up to 200x less pre-training efforts. Aiming at the Leave No One Behind Principle (LNOB), our approach manages to reduce inequalities between languages and energy consumption greatly. We make our codes and models publicly available here: \url{https://github.com/qcznlp/GreenPLMs}
LLMRec: Benchmarking Large Language Models on Recommendation TaskJunling Liu, Chao Liu, Peilin Zhou et al.
Recently, the fast development of Large Language Models (LLMs) such as ChatGPT has significantly advanced NLP tasks by enhancing the capabilities of conversational models. However, the application of LLMs in the recommendation domain has not been thoroughly investigated. To bridge this gap, we propose LLMRec, a LLM-based recommender system designed for benchmarking LLMs on various recommendation tasks. Specifically, we benchmark several popular off-the-shelf LLMs, such as ChatGPT, LLaMA, ChatGLM, on five recommendation tasks, including rating prediction, sequential recommendation, direct recommendation, explanation generation, and review summarization. Furthermore, we investigate the effectiveness of supervised finetuning to improve LLMs' instruction compliance ability. The benchmark results indicate that LLMs displayed only moderate proficiency in accuracy-based tasks such as sequential and direct recommendation. However, they demonstrated comparable performance to state-of-the-art methods in explainability-based tasks. We also conduct qualitative evaluations to further evaluate the quality of contents generated by different models, and the results show that LLMs can truly understand the provided information and generate clearer and more reasonable results. We aspire that this benchmark will serve as an inspiration for researchers to delve deeper into the potential of LLMs in enhancing recommendation performance. Our codes, processed data and benchmark results are available at https://github.com/williamliujl/LLMRec.
0.6CLJun 26, 2022
Low-resource Accent Classification in Geographically-proximate Settings: A Forensic and Sociophonetics PerspectiveQingcheng Zeng, Dading Chong, Peilin Zhou et al. · harvard
Accented speech recognition and accent classification are relatively under-explored research areas in speech technology. Recently, deep learning-based methods and Transformer-based pretrained models have achieved superb performances in both areas. However, most accent classification tasks focused on classifying different kinds of English accents and little attention was paid to geographically-proximate accent classification, especially under a low-resource setting where forensic speech science tasks usually encounter. In this paper, we explored three main accent modelling methods combined with two different classifiers based on 105 speaker recordings retrieved from five urban varieties in Northern England. Although speech representations generated from pretrained models generally have better performances in downstream classification, traditional methods like Mel Frequency Cepstral Coefficients (MFCCs) and formant measurements are equipped with specific strengths. These results suggest that in forensic phonetics scenario where data are relatively scarce, a simple modelling method and classifier could be competitive with state-of-the-art pretrained speech models as feature extractors, which could enhance a sooner estimation for the accent information in practices. Besides, our findings also cross-validated a new methodology in quantifying sociophonetic changes.
Streamlining Social Media Information Retrieval for COVID-19 Research with Deep LearningYining Hua, Jiageng Wu, Shixu Lin et al.
Objective: Social media-based public health research is crucial for epidemic surveillance, but most studies identify relevant corpora with keyword-matching. This study develops a system to streamline the process of curating colloquial medical dictionaries. We demonstrate the pipeline by curating a UMLS-colloquial symptom dictionary from COVID-19-related tweets as proof of concept. Methods: COVID-19-related tweets from February 1, 2020, to April 30, 2022 were used. The pipeline includes three modules: a named entity recognition module to detect symptoms in tweets; an entity normalization module to aggregate detected entities; and a mapping module that iteratively maps entities to Unified Medical Language System concepts. A random 500 entity sample were drawn from the final dictionary for accuracy validation. Additionally, we conducted a symptom frequency distribution analysis to compare our dictionary to a pre-defined lexicon from previous research. Results: We identified 498,480 unique symptom entity expressions from the tweets. Pre-processing reduces the number to 18,226. The final dictionary contains 38,175 unique expressions of symptoms that can be mapped to 966 UMLS concepts (accuracy = 95%). Symptom distribution analysis found that our dictionary detects more symptoms and is effective at identifying psychiatric disorders like anxiety and depression, often missed by pre-defined lexicons. Conclusions: This study advances public health research by implementing a novel, systematic pipeline for curating symptom lexicons from social media data. The final lexicon's high accuracy, validated by medical professionals, underscores the potential of this methodology to reliably interpret and categorize vast amounts of unstructured social media data into actionable medical insights across diverse linguistic and regional landscapes.
Qilin-Med: Multi-stage Knowledge Injection Advanced Medical Large Language ModelQichen Ye, Junling Liu, Dading Chong et al.
Integrating large language models (LLMs) into healthcare holds great potential but faces challenges. Pre-training LLMs from scratch for domains like medicine is resource-heavy and often unfeasible. On the other hand, sole reliance on Supervised Fine-tuning (SFT) can result in overconfident predictions and may not tap into domain-specific insights. In response, we present a multi-stage training method combining Domain-specific Continued Pre-training (DCPT), SFT, and Direct Preference Optimization (DPO). In addition, we publish a 3Gb Chinese Medicine (ChiMed) dataset, encompassing medical question answering, plain texts, knowledge graphs, and dialogues, segmented into three training stages. The medical LLM trained with our pipeline, Qilin-Med, shows substantial performance improvement. In the CPT and SFT phases, Qilin-Med achieved 38.4% and 40.0% accuracy on the CMExam test set, respectively. It outperformed the basemodel Baichuan-7B (accuracy: 33.5%), by 7.5%. In the DPO phase, it scored 16.66 in BLEU-1 and 27.44 in ROUGE-1 on the Huatuo-26M test set, bringing further improvement to the SFT phase (12.69 in BLEU-1 and 24.21 in ROUGE-1). Additionally, we have further enhanced the model's performance through the Retrieval Augmented Generation (RAG) approach. Experiments demonstrate that Qilin-Med-RAG achieves an accuracy rate of 42.8% on CMExam. These results highlight the contribution of our novel training approach in building LLMs for medical applications.
From Web Search towards Agentic Deep Research: Incentivizing Search with Reasoning AgentsWeizhi Zhang, Yangning Li, Yuanchen Bei et al. · pku
Information retrieval is a cornerstone of modern knowledge acquisition, enabling billions of queries each day across diverse domains. However, traditional keyword-based search engines are increasingly inadequate for handling complex, multi-step information needs. Our position is that Large Language Models (LLMs), endowed with reasoning and agentic capabilities, are ushering in a new paradigm termed Agentic Deep Research. These systems transcend conventional information search techniques by tightly integrating autonomous reasoning, iterative retrieval, and information synthesis into a dynamic feedback loop. We trace the evolution from static web search to interactive, agent-based systems that plan, explore, and learn. We also introduce a test-time scaling law to formalize the impact of computational depth on reasoning and search. Supported by benchmark results and the rise of open-source implementations, we demonstrate that Agentic Deep Research not only significantly outperforms existing approaches, but is also poised to become the dominant paradigm for future information seeking. All the related resources, including industry products, research papers, benchmark datasets, and open-source implementations, are collected for the community in https://github.com/DavidZWZ/Awesome-Deep-Research.
14.9CLJan 1, 2024
Large Language Models in Mental Health Care: a Scoping ReviewYining Hua, Fenglin Liu, Kailai Yang et al.
Objectieve:This review aims to deliver a comprehensive analysis of Large Language Models (LLMs) utilization in mental health care, evaluating their effectiveness, identifying challenges, and exploring their potential for future application. Materials and Methods: A systematic search was performed across multiple databases including PubMed, Web of Science, Google Scholar, arXiv, medRxiv, and PsyArXiv in November 2023. The review includes all types of original research, regardless of peer-review status, published or disseminated between October 1, 2019, and December 2, 2023. Studies were included without language restrictions if they employed LLMs developed after T5 and directly investigated research questions within mental health care settings. Results: Out of an initial 313 articles, 34 were selected based on their relevance to LLMs applications in mental health care and the rigor of their reported outcomes. The review identified various LLMs applications in mental health care, including diagnostics, therapy, and enhancing patient engagement. Key challenges highlighted were related to data availability and reliability, the nuanced handling of mental states, and effective evaluation methods. While LLMs showed promise in improving accuracy and accessibility, significant gaps in clinical applicability and ethical considerations were noted. Conclusion: LLMs hold substantial promise for enhancing mental health care. For their full potential to be realized, emphasis must be placed on developing robust datasets, development and evaluation frameworks, ethical guidelines, and interdisciplinary collaborations to address current limitations.
ClimateIQA: A New Dataset and Benchmark to Advance Vision-Language Models in Meteorology Anomalies AnalysisJian Chen, Peilin Zhou, Yining Hua et al.
Meteorological heatmaps play a vital role in deciphering extreme weather phenomena, yet their inherent complexities marked by irregular contours, unstructured patterns, and complex color variations present unique analytical hurdles for state-of-the-art Vision-Language Models (VLMs). Current state-of-the-art models like GPT-4o, Qwen-VL, and LLaVA 1.6 struggle with tasks such as precise color identification and spatial localization, resulting in inaccurate or incomplete interpretations. To address these challenges, we introduce Sparse Position and Outline Tracking (SPOT), a novel algorithm specifically designed to process irregularly shaped colored regions in visual data. SPOT identifies and localizes these regions by extracting their spatial coordinates, enabling structured representations of irregular shapes. Building on SPOT, we construct ClimateIQA, a novel meteorological visual question answering (VQA) dataset, comprising 26,280 high-resolution heatmaps and 762,120 instruction samples for wind gust, total precipitation, wind chill index and heat index analysis. ClimateIQA enhances VLM training by incorporating spatial cues, geographic metadata, and reanalysis data, improving model accuracy in interpreting and describing extreme weather features. Furthermore, we develop Climate-Zoo, a suite of fine-tuned VLMs based on SPOT-empowered ClimateIQA, which significantly outperforms existing models in meteorological heatmap tasks.