Jan F. Nygård

h-index19
2papers

2 Papers

LGSep 6, 2023
EvoCLINICAL: Evolving Cyber-Cyber Digital Twin with Active Transfer Learning for Automated Cancer Registry System

Chengjie Lu, Qinghua Xu, Tao Yue et al.

The Cancer Registry of Norway (CRN) collects information on cancer patients by receiving cancer messages from different medical entities (e.g., medical labs, and hospitals) in Norway. Such messages are validated by an automated cancer registry system: GURI. Its correct operation is crucial since it lays the foundation for cancer research and provides critical cancer-related statistics to its stakeholders. Constructing a cyber-cyber digital twin (CCDT) for GURI can facilitate various experiments and advanced analyses of the operational state of GURI without requiring intensive interactions with the real system. However, GURI constantly evolves due to novel medical diagnostics and treatment, technological advances, etc. Accordingly, CCDT should evolve as well to synchronize with GURI. A key challenge of achieving such synchronization is that evolving CCDT needs abundant data labelled by the new GURI. To tackle this challenge, we propose EvoCLINICAL, which considers the CCDT developed for the previous version of GURI as the pretrained model and fine-tunes it with the dataset labelled by querying a new GURI version. EvoCLINICAL employs a genetic algorithm to select an optimal subset of cancer messages from a candidate dataset and query GURI with it. We evaluate EvoCLINICAL on three evolution processes. The precision, recall, and F1 score are all greater than 91%, demonstrating the effectiveness of EvoCLINICAL. Furthermore, we replace the active learning part of EvoCLINICAL with random selection to study the contribution of transfer learning to the overall performance of EvoCLINICAL. Results show that employing active learning in EvoCLINICAL increases its performances consistently.

SEFeb 16, 2024
LLMs in the Heart of Differential Testing: A Case Study on a Medical Rule Engine

Erblin Isaku, Christoph Laaber, Hassan Sartaj et al.

The Cancer Registry of Norway (CRN) uses an automated cancer registration support system (CaReSS) to support core cancer registry activities, i.e, data capture, data curation, and producing data products and statistics for various stakeholders. GURI is a core component of CaReSS, which is responsible for validating incoming data with medical rules. Such medical rules are manually implemented by medical experts based on medical standards, regulations, and research. Since large language models (LLMs) have been trained on a large amount of public information, including these documents, they can be employed to generate tests for GURI. Thus, we propose an LLM-based test generation and differential testing approach (LLMeDiff) to test GURI. We experimented with four different LLMs, two medical rule engine implementations, and 58 real medical rules to investigate the hallucination, success, time efficiency, and robustness of the LLMs to generate tests, and these tests' ability to find potential issues in GURI. Our results showed that GPT-3.5 hallucinates the least, is the most successful, and is generally the most robust; however, it has the worst time efficiency. Our differential testing revealed 22 medical rules where implementation inconsistencies were discovered (e.g., regarding handling rule versions). Finally, we provide insights for practitioners and researchers based on the results.