Alessandra Pascale

Cécile Rousseau, Samuel Jackson, Rodrigo H. Ordonez-Hurtado et al.

Development and operation of commercially viable fusion energy reactors such as tokamaks require accurate predictions of plasma dynamics from sparse, noisy, and incomplete sensors readings. The complexity of the underlying physics and the heterogeneity of experimental data pose formidable challenges for conventional numerical methods, while simultaneously highlight the promise of modern data-native AI approaches. A major obstacle in realizing this potential is, however, the lack of curated, openly available datasets and standardized benchmarks. Existing fusion datasets are scarce, fragmented across institutions, facility-specific, and inconsistently annotated, which limits reproducibility and prevents a fair and scalable comparison of AI approaches. In this paper, we introduce TokaMark, a structured benchmark to evaluate AI models on real experimental data collected from the Mega Ampere Spherical Tokamak (MAST). TokaMark provides a comprehensive suite of tools designed to (i) unify access to multi-modal heterogeneous fusion data, and (ii) harmonize formats, metadata, temporal alignment and evaluation protocols to enable consistent cross-model and cross-task comparisons. The benchmark includes a curated list of 14 tasks spanning a range of physical mechanisms, exploiting a variety of diagnostics and covering multiple operational use cases. A baseline model is provided to facilitate transparent comparison and validation within a unified framework. By establishing a unified benchmark for both the fusion and AI-for-science communities, TokaMark aims to accelerate progress in data-driven AI-based plasma modeling, contributing to the broader goal of achieving sustainable and stable fusion energy. The benchmark, documentation, and tooling will be fully open sourced upon acceptance to encourage community adoption and contribution.

Tobia Boschi, Andrea Loreti, Nicola C. Amorisco et al.

We present TokaMind, an open-source foundation model framework for fusion plasma modeling, based on a Multi-Modal Transformer (MMT) and trained on heterogeneous tokamak diagnostics from the publicly available MAST dataset. TokaMind supports multiple data modalities (time-series, 2D profiles, and videos) with different sampling rates, robust missing-signal handling, and efficient task adaptation via selectively loading and freezing four model components. To represent multi-modal signals, we use a training-free Discrete Cosine Transform embedding (DCT3D) and provide a clean interface for alternative embeddings (e.g., Variational Autoencoders - VAEs). We evaluate TokaMind on the recently introduced MAST benchmark TokaMark, comparing training and embedding strategies. Our results show that fine-tuned TokaMind outperforms the benchmark baseline on all but one task, and that, for several tasks, lightweight fine-tuning yields better performance than training the same architecture from scratch under a matched epoch budget. These findings highlight the benefits of multi-modal pretraining for tokamak plasma dynamics and provide a practical, extensible foundation for future fusion modeling tasks. Training code and model weights will be made publicly available.

Javier Carnerero-Cano, Massimiliano Pronesti, Radu Marinescu et al.

Large language models (LLMs) are widely used in knowledge-intensive applications but often generate factually incorrect responses. A promising approach to rectify these flaws is correcting LLMs using feedback. Therefore, in this paper, we introduce FactCorrector, a new post-hoc correction method that adapts across domains without retraining and leverages structured feedback about the factuality of the original response to generate a correction. To support rigorous evaluations of factuality correction methods, we also develop the VELI5 benchmark, a novel dataset containing systematically injected factual errors and ground-truth corrections. Experiments on VELI5 and several popular long-form factuality datasets show that the FactCorrector approach significantly improves factual precision while preserving relevance, outperforming strong baselines. We release our code at https://ibm.biz/factcorrector.

Víctor Valls, Mykhaylo Zayats, Alessandra Pascale

Graph Neural Networks (GNNs) have gained popularity in healthcare and other domains due to their ability to process multi-modal and multi-relational graphs. However, efficient training of GNNs remains challenging, with several open research questions. In this paper, we investigate how the flow of embedding information within GNNs affects the prediction of links in Knowledge Graphs (KGs). Specifically, we propose a mathematical model that decouples the GNN connectivity from the connectivity of the graph data and evaluate the performance of GNNs in a clinical triage use case. Our results demonstrate that incorporating domain knowledge into the GNN connectivity leads to better performance than using the same connectivity as the KG or allowing unconstrained embedding propagation. Moreover, we show that negative edges play a crucial role in achieving good predictions, and that using too many GNN layers can degrade performance.

Tigran Tchrakian, Mykhaylo Zayats, Alessandra Pascale et al.

Spinal cord stimulation (SCS) is a therapeutic approach used for the management of chronic pain. It involves the delivery of electrical impulses to the spinal cord via an implanted device, which when given suitable stimulus parameters can mask or block pain signals. Selection of optimal stimulation parameters usually happens in the clinic under the care of a provider whereas at-home SCS optimization is managed by the patient. In this paper, we propose a recommender system for the management of pain in chronic pain patients undergoing SCS. In particular, we use a contextual multi-armed bandit (CMAB) approach to develop a system that recommends SCS settings to patients with the aim of improving their condition. These recommendations, sent directly to patients though a digital health ecosystem, combined with a patient monitoring system closes the therapeutic loop around a chronic pain patient over their entire patient journey. We evaluated the system in a cohort of SCS-implanted ENVISION study subjects (Clinicaltrials.gov ID: NCT03240588) using a combination of quality of life metrics and Patient States (PS), a novel measure of holistic outcomes. SCS recommendations provided statistically significant improvement in clinical outcomes (pain and/or QoL) in 85\% of all subjects (N=21). Among subjects in moderate PS (N=7) prior to receiving recommendations, 100\% showed statistically significant improvements and 5/7 had improved PS dwell time. This analysis suggests SCS patients may benefit from SCS recommendations, resulting in additional clinical improvement on top of benefits already received from SCS therapy.

Radu Marinescu, Debarun Bhattacharjya, Junkyu Lee et al.

Large language models (LLMs) have achieved remarkable success in generative tasks, yet they often fall short in ensuring the factual accuracy of their outputs, thus limiting their reliability in real-world applications where correctness is critical. In this paper, we present FactReasoner, a novel neuro-symbolic based factuality assessment framework that employs probabilistic reasoning to evaluate the truthfulness of long-form generated responses. FactReasoner decomposes a response into atomic units, retrieves relevant contextual information from external knowledge sources, and models the logical relationships (e.g., entailment, contradiction) between these units and their contexts using probabilistic encodings. It then estimates the posterior probability that each atomic unit is supported by the retrieved evidence. Our experiments on both labeled and unlabeled benchmark datasets demonstrate that FactReasoner often outperforms state-of-the-art prompt-based methods in terms of factual precision and recall. Our open-source implementation is publicly available at: https://github.com/IBM/FactReasoner.

Cécile Rousseau, Tobia Boschi, Giandomenico Cornacchia et al.

SDForger is a flexible and efficient framework for generating high-quality multivariate time series using LLMs. Leveraging a compact data representation, SDForger provides synthetic time series generation from a few samples and low-computation fine-tuning of any autoregressive LLM. Specifically, the framework transforms univariate and multivariate signals into tabular embeddings, which are then encoded into text and used to fine-tune the LLM. At inference, new textual embeddings are sampled and decoded into synthetic time series that retain the original data's statistical properties and temporal dynamics. Across a diverse range of datasets, SDForger outperforms existing generative models in many scenarios, both in similarity-based evaluations and downstream forecasting tasks. By enabling textual conditioning in the generation process, SDForger paves the way for multimodal modeling and the streamlined integration of time series with textual information. The model is open-sourced at https://github.com/IBM/fms-dgt/tree/main/fms_dgt/public/databuilders/time_series.

Yufang Hou, Alessandra Pascale, Javier Carnerero-Cano et al.

Retrieval-augmented generation (RAG) has emerged as a promising solution to mitigate the limitations of large language models (LLMs), such as hallucinations and outdated information. However, it remains unclear how LLMs handle knowledge conflicts arising from different augmented retrieved passages, especially when these passages originate from the same source and have equal trustworthiness. In this work, we conduct a comprehensive evaluation of LLM-generated answers to questions that have varying answers based on contradictory passages from Wikipedia, a dataset widely regarded as a high-quality pre-training resource for most LLMs. Specifically, we introduce WikiContradict, a benchmark consisting of 253 high-quality, human-annotated instances designed to assess LLM performance when augmented with retrieved passages containing real-world knowledge conflicts. We benchmark a diverse range of both closed and open-source LLMs under different QA scenarios, including RAG with a single passage, and RAG with 2 contradictory passages. Through rigorous human evaluations on a subset of WikiContradict instances involving 5 LLMs and over 3,500 judgements, we shed light on the behaviour and limitations of these models. For instance, when provided with two passages containing contradictory facts, all models struggle to generate answers that accurately reflect the conflicting nature of the context, especially for implicit conflicts requiring reasoning. Since human evaluation is costly, we also introduce an automated model that estimates LLM performance using a strong open-source language model, achieving an F-score of 0.8. Using this automated metric, we evaluate more than 1,500 answers from seven LLMs across all WikiContradict instances. To facilitate future work, we release WikiContradict on: https://ibm.biz/wikicontradict.

Tobia Boschi, Francesca Bonin, Rodrigo Ordonez-Hurtado et al.

This paper introduces a novel methodology for Feature Selection for Functional Classification, FSFC, that addresses the challenge of jointly performing feature selection and classification of functional data in scenarios with categorical responses and multivariate longitudinal features. FSFC tackles a newly defined optimization problem that integrates logistic loss and functional features to identify the most crucial variables for classification. To address the minimization procedure, we employ functional principal components and develop a new adaptive version of the Dual Augmented Lagrangian algorithm. The computational efficiency of FSFC enables handling high-dimensional scenarios where the number of features may considerably exceed the number of statistical units. Simulation experiments demonstrate that FSFC outperforms other machine learning and deep learning methods in computational time and classification accuracy. Furthermore, the FSFC feature selection capability can be leveraged to significantly reduce the problem's dimensionality and enhance the performances of other classification algorithms. The efficacy of FSFC is also demonstrated through a real data application, analyzing relationships between four chronic diseases and other health and demographic factors.

Massimiliano Pronesti, Joao Bettencourt-Silva, Paul Flanagan et al.

Extracting scientific evidence from biomedical studies for clinical research questions (e.g., Does stem cell transplantation improve quality of life in patients with medically refractory Crohn's disease compared to placebo?) is a crucial step in synthesising biomedical evidence. In this paper, we focus on the task of document-level scientific evidence extraction for clinical questions with conflicting evidence. To support this task, we create a dataset called CochraneForest, leveraging forest plots from Cochrane systematic reviews. It comprises 202 annotated forest plots, associated clinical research questions, full texts of studies, and study-specific conclusions. Building on CochraneForest, we propose URCA (Uniform Retrieval Clustered Augmentation), a retrieval-augmented generation framework designed to tackle the unique challenges of evidence extraction. Our experiments show that URCA outperforms the best existing methods by up to 10.3% in F1 score on this task. However, the results also underscore the complexity of CochraneForest, establishing it as a challenging testbed for advancing automated evidence synthesis systems.

Tobia Boschi, Francesca Bonin, Rodrigo Ordonez-Hurtado et al.

This paper introduces a novel Functional Graph Convolutional Network (funGCN) framework that combines Functional Data Analysis and Graph Convolutional Networks to address the complexities of multi-task and multi-modal learning in digital health and longitudinal studies. With the growing importance of health solutions to improve health care and social support, ensure healthy lives, and promote well-being at all ages, funGCN offers a unified approach to handle multivariate longitudinal data for multiple entities and ensures interpretability even with small sample sizes. Key innovations include task-specific embedding components that manage different data types, the ability to perform classification, regression, and forecasting, and the creation of a knowledge graph for insightful data interpretation. The efficacy of funGCN is validated through simulation experiments and a real-data application.

Adam Dejl, James Barry, Alessandra Pascale et al.

Despite demonstrating remarkable performance across a wide range of tasks, large language models (LLMs) have also been found to frequently produce outputs that are incomplete or selectively omit key information. In sensitive domains, such omissions can result in significant harm comparable to that posed by factual inaccuracies, including hallucinations. In this study, we address the challenge of evaluating the comprehensiveness of LLM-generated texts, focusing on the detection of missing information or underrepresented viewpoints. We investigate three automated evaluation strategies: (1) an NLI-based method that decomposes texts into atomic statements and uses natural language inference (NLI) to identify missing links, (2) a Q&A-based approach that extracts question-answer pairs and compares responses across sources, and (3) an end-to-end method that directly identifies missing content using LLMs. Our experiments demonstrate the surprising effectiveness of the simple end-to-end approach compared to more complex methods, though at the cost of reduced robustness, interpretability and result granularity. We further assess the comprehensiveness of responses from several popular open-weight LLMs when answering user queries based on multiple sources.

Hoang Thanh Lam, Ernesto Diaz-Aviles, Alessandra Pascale et al.

Real-time estimation of destination and travel time for taxis is of great importance for existing electronic dispatch systems. We present an approach based on trip matching and ensemble learning, in which we leverage the patterns observed in a dataset of roughly 1.7 million taxi journeys to predict the corresponding final destination and travel time for ongoing taxi trips, as a solution for the ECML/PKDD Discovery Challenge 2015 competition. The results of our empirical evaluation show that our approach is effective and very robust, which led our team -- BlueTaxi -- to the 3rd and 7th position of the final rankings for the trip time and destination prediction tasks, respectively. Given the fact that the final rankings were computed using a very small test set (with only 320 trips) we believe that our approach is one of the most robust solutions for the challenge based on the consistency of our good results across the test sets.