Sarah Almeida Carneiro

Sarah Almeida Carneiro, Christos Xypolopoulos, Xiao Fei et al.

We introduce CARTE 1 (Culturally Anchored Regional-Territorial Evaluation), a multiplechoice benchmark for evaluating the ability of large language models (LLMs) to perform fine-grained reasoning over geographically grounded and regionally differentiated knowledge within France. While prior benchmarks focus on national-level cultural understanding, they largely overlook intra-country variation and the need to distinguish between closely related regional contexts. CARTE addresses this gap by introducing 2,431 questions spanning the 13 metropolitan regions of France and covering 14 thematic domains, including culture, language, demographics, economy, environment, and mobility. We further introduce CARTE-LV, a subset targeting Linguistic Variation across French regions, enabling focused evaluation of language-related differences. We evaluate 27 LLMs ranging from 1B to 12B parameters under few-shot settings. Our experiments reveal performance disparities across regions and model scales, suggesting systematic gaps in pretraining coverage and limited robustness to intra-national variation.

Sarah Almeida Carneiro, Giovanni Chierchia, Jean Charléty et al.

Although traffic is one of the massively collected data, it is often only available for specific regions. One concern is that, although there are studies that give good results for these data, the data from these regions may not be sufficiently representative to describe all the traffic patterns in the rest of the world. In quest of addressing this concern, we propose a speed prediction method that is independent of large historical speed data. To predict a vehicle's speed, we use the trajectory road topographical features to fit a Shared Weight Multilayer Perceptron learning model. Our results show significant improvement, both qualitative and quantitative, over standard regression analysis. Moreover, the proposed framework sheds new light on the way to design new approaches for traffic analysis.

Xiao Fei, Sarah Almeida Carneiro, Yang Zhang et al.

Protein-protein interaction (PPI) modeling has been widely studied as a binary or multi-label classification task. While emerging multimodal large language models (LLMs) can now describe single proteins, they remain unable to generate free-form descriptions of interactions between protein pairs. Moving beyond controlled vocabulary annotations, we propose to model PPI using free-text description, enabling richer expressiveness, improved interpretability, and better integration with literature knowledge base. We present PPI2Text, a multimodal LLM for free-form PPI captioning from amino acid sequences, that encodes each protein using ESM3 encoder, constructs a pair map from the two representations to capture interactions across all residue pairs, and autoregressively generates descriptions using a Qwen3 language decoder. We further introduce PaCo-RoPE, a coordinate-aligned positional encoding that aligns each axis of the pair grid with the residue positions of the corresponding protein. In addition, we release PPI2Text-Dataset, a 351k-pair corpus of free-form PPI descriptions aggregated from ten curated biological databases and further synthesized with Gemini under evidence-tiered prompting. PPI2Text consistently outperforms strong baselines across multiple ablation settings and evaluation protocols. It not only achieves higher scores on linguistic metrics against synthesized references, but also excels on factuality metrics, where an LLM-based judge evaluates outputs against raw biological evidence.

Sarah Almeida Carneiro, Giovanni Chierchia, Aurelie Pirayre et al.

A persistent challenge in the field of Intelligent Transportation Systems is to extract accurate traffic insights from geographic regions with scarce or no data coverage. To this end, we propose solutions for speed prediction using sparse GPS data points and their associated topographical and road design features. Our goal is to investigate whether we can use similarities in the terrain and infrastructure to train a machine learning model that can predict speed in regions where we lack transportation data. For this we create a Temporally Orientated Speed Dictionary Centered on Topographically Clustered Roads, which helps us to provide speed correlations to selected feature configurations. Our results show qualitative and quantitative improvement over new and standard regression methods. The presented framework provides a fresh perspective on devising strategies for missing data traffic analysis.