Brian Mac Namee

Paul Albert, Mohamed Saadeldin, Badri Narayanan et al.

Herbage mass yield and composition estimation is an important tool for dairy farmers to ensure an adequate supply of high quality herbage for grazing and subsequently milk production. By accurately estimating herbage mass and composition, targeted nitrogen fertiliser application strategies can be deployed to improve localised regions in a herbage field, effectively reducing the negative impacts of over-fertilization on biodiversity and the environment. In this context, deep learning algorithms offer a tempting alternative to the usual means of sward composition estimation, which involves the destructive process of cutting a sample from the herbage field and sorting by hand all plant species in the herbage. The process is labour intensive and time consuming and so not utilised by farmers. Deep learning has been successfully applied in this context on images collected by high-resolution cameras on the ground. Moving the deep learning solution to drone imaging, however, has the potential to further improve the herbage mass yield and composition estimation task by extending the ground-level estimation to the large surfaces occupied by fields/paddocks. Drone images come at the cost of lower resolution views of the fields taken from a high altitude and requires further herbage ground-truth collection from the large surfaces covered by drone images. This paper proposes to transfer knowledge learned on ground-level images to raw drone images in an unsupervised manner. To do so, we use unpaired image style translation to enhance the resolution of drone images by a factor of eight and modify them to appear closer to their ground-level counterparts. We then ... ~\url{www.github.com/PaulAlbert31/Clover_SSL}.

Jinghui Lu, Linyi Yang, Brian Mac Namee et al.

We present a novel rationale-centric framework with human-in-the-loop -- Rationales-centric Double-robustness Learning (RDL) -- to boost model out-of-distribution performance in few-shot learning scenarios. By using static semi-factual generation and dynamic human-intervened correction, RDL exploits rationales (i.e. phrases that cause the prediction), human interventions and semi-factual augmentations to decouple spurious associations and bias models towards generally applicable underlying distributions, which enables fast and accurate generalisation. Experimental results show that RDL leads to significant prediction benefits on both in-distribution and out-of-distribution tests compared to many state-of-the-art benchmarks -- especially for few-shot learning scenarios. We also perform extensive ablation studies to support in-depth analyses of each component in our framework.

Svetoslav Nizhnichenkov, Rahul Nair, Elizabeth Daly et al.

We investigate how successful bias mitigation reshapes the embedding space of encoder-only and decoder-only foundation models, offering an internal audit of model behaviour through representational analysis. Using BERT and Llama2 as representative architectures, we assess the shifts in associations between gender and occupation terms by comparing baseline and bias-mitigated variants of the models. Our findings show that bias mitigation reduces gender-occupation disparities in the embedding space, leading to more neutral and balanced internal representations. These representational shifts are consistent across both model types, suggesting that fairness improvements can manifest as interpretable and geometric transformations. These results position embedding analysis as a valuable tool for understanding and validating the effectiveness of debiasing methods in foundation models. To further promote the assessment of decoder-only models, we introduce WinoDec, a dataset consisting of 4,000 sequences with gender and occupation terms, and release it to the general public. (https://github.com/winodec/wino-dec)

Jinghui Lu, Dongsheng Zhu, Weidong Han et al.

Current methods for prompt learning in zeroshot scenarios widely rely on a development set with sufficient human-annotated data to select the best-performing prompt template a posteriori. This is not ideal because in a realworld zero-shot scenario of practical relevance, no labelled data is available. Thus, we propose a simple yet effective method for screening reasonable prompt templates in zero-shot text classification: Perplexity Selection (Perplection). We hypothesize that language discrepancy can be used to measure the efficacy of prompt templates, and thereby develop a substantiated perplexity-based scheme allowing for forecasting the performance of prompt templates in advance. Experiments show that our method leads to improved prediction performance in a realistic zero-shot setting, eliminating the need for any labelled examples.

Jinghui Lu, Rui Zhao, Brian Mac Namee et al.

Much of named entity recognition (NER) research focuses on developing dataset-specific models based on data from the domain of interest, and a limited set of related entity types. This is frustrating as each new dataset requires a new model to be trained and stored. In this work, we present a ``versatile'' model -- the Prompting-based Unified NER system (PUnifiedNER) -- that works with data from different domains and can recognise up to 37 entity types simultaneously, and theoretically it could be as many as possible. By using prompt learning, PUnifiedNER is a novel approach that is able to jointly train across multiple corpora, implementing intelligent on-demand entity recognition. Experimental results show that PUnifiedNER leads to significant prediction benefits compared to dataset-specific models with impressively reduced model deployment costs. Furthermore, the performance of PUnifiedNER can achieve competitive or even better performance than state-of-the-art domain-specific methods for some datasets. We also perform comprehensive pilot and ablation studies to support in-depth analysis of each component in PUnifiedNER.

Misgina Tsighe Hagos, Kathleen M. Curran, Brian Mac Namee

Identifying spurious correlations learned by a trained model is at the core of refining a trained model and building a trustworthy model. We present a simple method to identify spurious correlations that have been learned by a model trained for image classification problems. We apply image-level perturbations and monitor changes in certainties of predictions made using the trained model. We demonstrate this approach using an image classification dataset that contains images with synthetically generated spurious regions and show that the trained model was overdependent on spurious regions. Moreover, we remove the learned spurious correlations with an explanation based learning approach.

Paul Albert, Mohamed Saadeldin, Badri Narayanan et al.

Sward species composition estimation is a tedious one. Herbage must be collected in the field, manually separated into components, dried and weighed to estimate species composition. Deep learning approaches using neural networks have been used in previous work to propose faster and more cost efficient alternatives to this process by estimating the biomass information from a picture of an area of pasture alone. Deep learning approaches have, however, struggled to generalize to distant geographical locations and necessitated further data collection to retrain and perform optimally in different climates. In this work, we enhance the deep learning solution by reducing the need for ground-truthed (GT) images when training the neural network. We demonstrate how unsupervised contrastive learning can be used in the sward composition prediction problem and compare with the state-of-the-art on the publicly available GrassClover dataset collected in Denmark as well as a more recent dataset from Ireland where we tackle herbage mass and height estimation.

Misgina Tsighe Hagos, Kathleen M. Curran, Brian Mac Namee

Explanatory Interactive Learning (XIL) collects user feedback on visual model explanations to implement a Human-in-the-Loop (HITL) based interactive learning scenario. Different user feedback types will have different impacts on user experience and the cost associated with collecting feedback since different feedback types involve different levels of image annotation. Although XIL has been used to improve classification performance in multiple domains, the impact of different user feedback types on model performance and explanation accuracy is not well studied. To guide future XIL work we compare the effectiveness of two different user feedback types in image classification tasks: (1) instructing an algorithm to ignore certain spurious image features, and (2) instructing an algorithm to focus on certain valid image features. We use explanations from a Gradient-weighted Class Activation Mapping (GradCAM) based XIL model to support both feedback types. We show that identifying and annotating spurious image features that a model finds salient results in superior classification and explanation accuracy than user feedback that tells a model to focus on valid image features.

Misgina Tsighe Hagos, Niamh Belton, Ronan P. Killeen et al.

Alzheimer's Disease (AD) is a progressive disease preceded by Mild Cognitive Impairment (MCI). Early detection of AD is crucial for making treatment decisions. However, most of the literature on computer-assisted detection of AD focuses on classifying brain images into one of three major categories: healthy, MCI, and AD; or categorizing MCI patients into (1) progressive: those who progress from MCI to AD at a future examination time, and (2) stable: those who stay as MCI and never progress to AD. This misses the opportunity to accurately identify the trajectory of progressive MCI patients. In this paper, we revisit the brain image classification task for AD identification and re-frame it as an ordinal classification task to predict how close a patient is to the severe AD stage. To this end, we select progressive MCI patients from the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset and construct an ordinal dataset with a prediction target that indicates the time to progression to AD. We train a Siamese network model to predict the time to onset of AD based on MRI brain images. We also propose a Weighted variety of Siamese network and compare its performance to a baseline model. Our evaluations show that incorporating a weighting factor to Siamese networks brings considerable performance gain at predicting how close input brain MRI images are to progressing to AD. Moreover, we complement our results with an interpretation of the learned embedding space of the Siamese networks using a model explainability technique.

Misgina Tsighe Hagos, Kathleen M. Curran, Brian Mac Namee

Medical image classification models are frequently trained using training datasets derived from multiple data sources. While leveraging multiple data sources is crucial for achieving model generalization, it is important to acknowledge that the diverse nature of these sources inherently introduces unintended confounders and other challenges that can impact both model accuracy and transparency. A notable confounding factor in medical image classification, particularly in musculoskeletal image classification, is skeletal maturation-induced bone growth observed during adolescence. We train a deep learning model using a Covid-19 chest X-ray dataset and we showcase how this dataset can lead to spurious correlations due to unintended confounding regions. eXplanation Based Learning (XBL) is a deep learning approach that goes beyond interpretability by utilizing model explanations to interactively unlearn spurious correlations. This is achieved by integrating interactive user feedback, specifically feature annotations. In our study, we employed two non-demanding manual feedback mechanisms to implement an XBL-based approach for effectively eliminating these spurious correlations. Our results underscore the promising potential of XBL in constructing robust models even in the presence of confounding factors.

Misgina Tsighe Hagos, Niamh Belton, Kathleen M. Curran et al.

eXplanation Based Learning (XBL) is an interactive learning approach that provides a transparent method of training deep learning models by interacting with their explanations. XBL augments loss functions to penalize a model based on deviation of its explanations from user annotation of image features. The literature on XBL mostly depends on the intersection of visual model explanations and image feature annotations. We present a method to add a distance-aware explanation loss to categorical losses that trains a learner to focus on important regions of a training dataset. Distance is an appropriate approach for calculating explanation loss since visual model explanations such as Gradient-weighted Class Activation Mapping (Grad-CAMs) are not strictly bounded as annotations and their intersections may not provide complete information on the deviation of a model's focus from relevant image regions. In addition to assessing our model using existing metrics, we propose an interpretability metric for evaluating visual feature-attribution based model explanations that is more informative of the model's performance than existing metrics. We demonstrate performance of our proposed method on three image classification tasks.

Misgina Tsighe Hagos, Kathleen M. Curran, Brian Mac Namee

eXplanation Based Learning (XBL) is a form of Interactive Machine Learning (IML) that provides a model refining approach via user feedback collected on model explanations. Although the interactivity of XBL promotes model transparency, XBL requires a huge amount of user interaction and can become expensive as feedback is in the form of detailed annotation rather than simple category labelling which is more common in IML. This expense is exacerbated in high stakes domains such as medical image classification. To reduce the effort and expense of XBL we introduce a new approach that uses two input instances and their corresponding Gradient Weighted Class Activation Mapping (GradCAM) model explanations as exemplary explanations to implement XBL. Using a medical image classification task, we demonstrate that, using minimal human input, our approach produces improved explanations (+0.02, +3%) and achieves reduced classification performance (-0.04, -4%) when compared against a model trained without interactions.

Paul Albert, Mohamed Saadeldin, Badri Narayanan et al.

Monitoring species-specific dry herbage biomass is an important aspect of pasture-based milk production systems. Being aware of the herbage biomass in the field enables farmers to manage surpluses and deficits in herbage supply, as well as using targeted nitrogen fertilization when necessary. Deep learning for computer vision is a powerful tool in this context as it can accurately estimate the dry biomass of a herbage parcel using images of the grass canopy taken using a portable device. However, the performance of deep learning comes at the cost of an extensive, and in this case destructive, data gathering process. Since accurate species-specific biomass estimation is labor intensive and destructive for the herbage parcel, we propose in this paper to study low supervision approaches to dry biomass estimation using computer vision. Our contributions include: a synthetic data generation algorithm to generate data for a herbage height aware semantic segmentation task, an automatic process to label data using semantic segmentation maps, and a robust regression network trained to predict dry biomass using approximate biomass labels and a small trusted dataset with gold standard labels. We design our approach on a herbage mass estimation dataset collected in Ireland and also report state-of-the-art results on the publicly released Grass-Clover biomass estimation dataset from Denmark. Our code is available at https://git.io/J0L2a

Jinghui Lu, Ziwei Yang, Yanjie Wang et al.

In this study, we aim to reduce generation latency for Named Entity Recognition (NER) with Large Language Models (LLMs). The main cause of high latency in LLMs is the sequential decoding process, which autoregressively generates all labels and mentions for NER, significantly increase the sequence length. To this end, we introduce Parallel Decoding in LLM for NE} (PaDeLLM-NER), a approach that integrates seamlessly into existing generative model frameworks without necessitating additional modules or architectural modifications. PaDeLLM-NER allows for the simultaneous decoding of all mentions, thereby reducing generation latency. Experiments reveal that PaDeLLM-NER significantly increases inference speed that is 1.76 to 10.22 times faster than the autoregressive approach for both English and Chinese. Simultaneously it maintains the quality of predictions as evidenced by the performance that is on par with the state-of-the-art across various datasets.

Payel Sadhukhan, Arjun Pakrashi, Brian Mac Namee

In this work, we propose Random Walk-steered Majority Undersampling (RWMaU), which undersamples the majority points of a class imbalanced dataset, in order to balance the classes. Rather than marking the majority points which belong to the neighborhood of a few minority points, we are interested to perceive the closeness of the majority points to the minority class. Random walk, a powerful tool for perceiving the proximities of connected points in a graph, is used to identify the majority points which lie close to the minority class of a class-imbalanced dataset. The visit frequencies and the order of visits of the majority points in the walks enable us to perceive an overall closeness of the majority points to the minority class. The ones lying close to the minority class are subsequently undersampled. Empirical evaluation on 21 datasets and 3 classifiers demonstrate substantial improvement in performance of RWMaU over the competing methods.

Payel Sadhukhan, Arjun Pakrashi, Sarbani Palit et al.

There is often a mixture of very frequent labels and very infrequent labels in multi-label datatsets. This variation in label frequency, a type class imbalance, creates a significant challenge for building efficient multi-label classification algorithms. In this paper, we tackle this problem by proposing a minority class oversampling scheme, UCLSO, which integrates Unsupervised Clustering and Label-Specific data Oversampling. Clustering is performed to find out the key distinct and locally connected regions of a multi-label dataset (irrespective of the label information). Next, for each label, we explore the distributions of minority points in the cluster sets. Only the minority points within a cluster are used to generate the synthetic minority points that are used for oversampling. Even though the cluster set is the same across all labels, the distributions of the synthetic minority points will vary across the labels. The training dataset is augmented with the set of label-specific synthetic minority points, and classifiers are trained to predict the relevance of each label independently. Experiments using 12 multi-label datasets and several multi-label algorithms show that the proposed method performed very well compared to the other competing algorithms.

Qin Ruan, Brian Mac Namee, Ruihai Dong

Leveraging unlabelled data through weak or distant supervision is a compelling approach to developing more effective text classification models. This paper proposes a simple but effective data augmentation method, which leverages the idea of pseudo-labelling to select samples from noisy distant supervision annotation datasets. The result shows that the proposed method improves the accuracy of biased news detection models.

John Mitros, Brian Mac Namee

Neural networks are often utilised in critical domain applications (e.g. self-driving cars, financial markets, and aerospace engineering), even though they exhibit overconfident predictions for ambiguous inputs. This deficiency demonstrates a fundamental flaw indicating that neural networks often overfit on spurious correlations. To address this problem in this work we present two novel objectives that improve the ability of a network to detect out-of-distribution samples and therefore avoid overconfident predictions for ambiguous inputs. We empirically demonstrate that our methods outperform the baseline and perform better than the majority of existing approaches while still maintaining a competitive performance against the rest. Additionally, we empirically demonstrate the robustness of our approach against common corruptions and demonstrate the importance of regularisation and auxiliary information in out-of-distribution detection.

Jinghui Lu, Maeve Henchion, Ivan Bacher et al.

Training deep learning models with limited labelled data is an attractive scenario for many NLP tasks, including document classification. While with the recent emergence of BERT, deep learning language models can achieve reasonably good performance in document classification with few labelled instances, there is a lack of evidence in the utility of applying BERT-like models on long document classification. This work introduces a long-text-specific model -- the Hierarchical BERT Model (HBM) -- that learns sentence-level features of the text and works well in scenarios with limited labelled data. Various evaluation experiments have demonstrated that HBM can achieve higher performance in document classification than the previous state-of-the-art methods with only 50 to 200 labelled instances, especially when documents are long. Also, as an extra benefit of HBM, the salient sentences identified by learned HBM are useful as explanations for labelling documents based on a user study.

Mehran H. Z. Bazargani, Arjun Pakrashi, Brian Mac Namee

Anomaly detection is a challenging problem in machine learning, and is even more so when dealing with instances that are captured in low-level, raw data representations without a well-behaved set of engineered features. The Radial Basis Function Data Descriptor (RBFDD) network is an effective solution for anomaly detection, however, it is a shallow model that does not deal effectively with raw data representations. This paper investigates approaches to modifying the RBFDD network to transform it into a deep one-class classifier suitable for anomaly detection problems with low-level raw data representations. We show that approaches based on transfer learning are not effective and our results suggest that this is because the latent representations learned by generic classification models are not suitable for anomaly detection. Instead we show that an approach that adds multiple convolutional layers before the RBF layer, to form a Deep Radial Basis Function Data Descriptor (D-RBFDD) network, is very effective. This is shown in a set of evaluation experiments using multiple anomaly detection scenarios created from publicly available image classification datasets, and a real-world anomaly detection dataset in which different types of arrhythmia are detected in electrocardiogram (ECG) data. Our experiments show that the D-RBFDD network out-performs state-of-the-art anomaly detection methods including the Deep Support Vector Data Descriptor (Deep SVDD), One-Class SVM, and Isolation Forest on the image datasets, and produces competitive results for the ECG dataset.

Badri Narayanan, Mohamed Saadeldin, Paul Albert et al.

The dairy industry uses clover and grass as fodder for cows. Accurate estimation of grass and clover biomass yield enables smart decisions in optimizing fertilization and seeding density, resulting in increased productivity and positive environmental impact. Grass and clover are usually planted together, since clover is a nitrogen-fixing plant that brings nutrients to the soil. Adjusting the right percentages of clover and grass in a field reduces the need for external fertilization. Existing approaches for estimating the grass-clover composition of a field are expensive and time consuming - random samples of the pasture are clipped and then the components are physically separated to weigh and calculate percentages of dry grass, clover and weeds in each sample. There is growing interest in developing novel deep learning based approaches to non-destructively extract pasture phenotype indicators and biomass yield predictions of different plant species from agricultural imagery collected from the field. Providing these indicators and predictions from images alone remains a significant challenge. Heavy occlusions in the dense mixture of grass, clover and weeds make it difficult to estimate each component accurately. Moreover, although supervised deep learning models perform well with large datasets, it is tedious to acquire large and diverse collections of field images with precise ground truth for different biomass yields. In this paper, we demonstrate that applying data augmentation and transfer learning is effective in predicting multi-target biomass percentages of different plant species, even with a small training dataset. The scheme proposed in this paper used a training set of only 261 images and provided predictions of biomass percentages of grass, clover, white clover, red clover, and weeds with mean absolute error of 6.77%, 6.92%, 6.21%, 6.89%, and 4.80% respectively.

Cathal Ryan, Christophe Guéret, Donagh Berry et al.

Mastitis is a billion dollar health problem for the modern dairy industry, with implications for antibiotic resistance. The use of AI techniques to identify the early onset of this disease, thus has significant implications for the sustainability of this agricultural sector. Current approaches to treating mastitis involve antibiotics and this practice is coming under ever increasing scrutiny. Using machine learning models to identify cows at risk of developing mastitis and applying targeted treatment regimes to only those animals promotes a more sustainable approach. Incorrect predictions from such models, however, can lead to monetary losses, unnecessary use of antibiotics, and even the premature death of animals, so it is important to generate compelling explanations for predictions to build trust with users and to better support their decision making. In this paper we demonstrate a system developed to predict mastitis infections in cows and provide explanations of these predictions using counterfactuals. We demonstrate the system and describe the engagement with farmers undertaken to build it.

Cathal Ryan, Christophe Guéret, Donagh Berry et al.

The aim of this study was to build a modelling framework that would allow us to be able to detect mastitis infections before they would normally be found by farmers through the introduction of machine learning techniques. In the making of this we created two different modelling framework's, one that works on the premise of detecting Sub Clinical mastitis infections at one Somatic Cell Count recording in advance called SMA and the other tries to detect both Sub Clinical mastitis infections aswell as Clinical mastitis infections at any time the cow is milked called AMA. We also introduce the idea of two different feature sets for our study, these represent different characteristics that should be taken into account when detecting infections, these were the idea of a cow differing to a farm mean and also trends in the lactation. We reported that the results for SMA are better than those created by AMA for Sub Clinical infections yet it has the significant disadvantage of only being able to classify Sub Clinical infections due to how we recorded Sub Clinical infections as being any time a Somatic Cell Count measurement went above a certain threshold where as CM could appear at any stage of lactation. Thus in some cases the lower accuracy values for AMA might in fact be more beneficial to farmers.

John Mitros, Arjun Pakrashi, Brian Mac Namee

Deep neural networks have been successful in diverse discriminative classification tasks, although, they are poorly calibrated often assigning high probability to misclassified predictions. Potential consequences could lead to trustworthiness and accountability of the models when deployed in real applications, where predictions are evaluated based on their confidence scores. Existing solutions suggest the benefits attained by combining deep neural networks and Bayesian inference to quantify uncertainty over the models' predictions for ambiguous datapoints. In this work we propose to validate and test the efficacy of likelihood based models in the task of out of distribution detection (OoD). Across different datasets and metrics we show that Bayesian deep learning models on certain occasions marginally outperform conventional neural networks and in the event of minimal overlap between in/out distribution classes, even the best models exhibit a reduction in AUC scores in detecting OoD data. Preliminary investigations indicate the potential inherent role of bias due to choices of initialisation, architecture or activation functions. We hypothesise that the sensitivity of neural networks to unseen inputs could be a multi-factor phenomenon arising from the different architectural design choices often amplified by the curse of dimensionality. Furthermore, we perform a study to find the effect of the adversarial noise resistance methods on in and out-of-distribution performance, as well as, also investigate adversarial noise robustness of Bayesian deep learners.

Ellen Rushe, Brian Mac Namee

A common assumption of novelty detection is that the distribution of both "normal" and "novel" data are static. This, however, is often not the case - for example scenarios where data evolves over time or scenarios in which the definition of normal and novel depends on contextual information, both leading to changes in these distributions. This can lead to significant difficulties when attempting to train a model on datasets where the distribution of normal data in one scenario is similar to that of novel data in another scenario. In this paper we propose a context-aware approach to novelty detection for deep autoencoders to address these difficulties. We create a semi-supervised network architecture that utilises auxiliary labels to reveal contextual information and allow the model to adapt to a variety of contexts in which the definitions of normal and novel change. We evaluate our approach on both image data and real world audio data displaying these characteristics and show that the performance of individually trained models can be achieved in a single model.

John Mitros, Brian Mac Namee

Deep neural networks (DNN) are versatile parametric models utilised successfully in a diverse number of tasks and domains. However, they have limitations---particularly from their lack of robustness and over-sensitivity to out of distribution samples. Bayesian Neural Networks, due to their formulation under the Bayesian framework, provide a principled approach to building neural networks that address these limitations. This paper describes a study that empirically evaluates and compares Bayesian Neural Networks to their equivalent point estimate Deep Neural Networks to quantify the predictive uncertainty induced by their parameters, as well as their performance in view of this uncertainty. In this study, we evaluated and compared three point estimate deep neural networks against comparable Bayesian neural network alternatives using two well-known benchmark image classification datasets (CIFAR-10 and SVHN).

Luis Miralles, M. Atif Qureshi, Brian Mac Namee

Real-Time Bidding is nowadays one of the most promising systems in the online advertising ecosystem. In the presented study, the performance of RTB campaigns is improved by optimising the parameters of the users' profiles and the publishers' websites. Most studies about optimising RTB campaigns are focused on the bidding strategy. In contrast, the objective of our research consists of optimising RTB campaigns by finding out configurations that maximise both the number of impressions and their average profitability. The experiments demonstrate that, when the number of required visits by advertisers is low, it is easy to find configurations with high average profitability, but as the required number of visits increases, the average profitability tends to go down. Additionally, configuration optimisation has been combined with other interesting strategies to increase, even more, the campaigns' profitability. Along with parameter configuration the study considers the following complementary strategies to increase profitability: i) selecting multiple configurations with a small number of visits instead of a unique configuration with a large number, ii) discarding visits according to the thresholds of cost and profitability, iii) analysing a reduced space of the dataset and extrapolating the solution, and iv) increasing the search space by including solutions below the required number of visits. The developed campaign optimisation methodology could be offered by RTB platforms to advertisers to make their campaigns more profitable.

Jinghui Lu, Maeve Henchion, Brian Mac Namee

Manually labelling large collections of text data is a time-consuming, expensive, and laborious task, but one that is necessary to support machine learning based on text datasets. Active learning has been shown to be an effective way to alleviate some of the effort required in utilising large collections of unlabelled data for machine learning tasks without needing to fully label them. The representation mechanism used to represent text documents when performing active learning, however, has a significant influence on how effective the process will be. While simple vector representations such as bag of words have been shown to be an effective way to represent documents during active learning, the emergence of representation mechanisms based on the word embeddings prevalent in neural network research (e.g. word2vec and transformer-based models like BERT) offer a promising, and as yet not fully explored, alternative. This paper describes a large-scale evaluation of the effectiveness of different text representation mechanisms for active learning across 8 datasets from varied domains. This evaluation shows that using representations based on modern word embeddings---especially BERT---, which have not yet been widely used in active learning, achieves a significant improvement over more commonly used vector-based methods like bag of words.

Matthieu Bellucci, Luis Miralles, M. Atif Qureshi et al.

Lebesgue sampling is based on collecting information depending on the values of the signal. Although the interpolation methods for periodic sampling have been a topic of research for a long time, there is a lack of study in methods capable of taking advantage of the Lebesgue sampling characteristics to reconstruct time series more accurately. Indeed, Lebesgue sampling contains additional information about the shape of the signal in-between two sampled points. Using this information would allow us to generate an interpolated signal closer to the original one. That is to say, the average distance between the interpolated signal and the original signal will be smaller than a signal interpolated with other interpolation methods. In this paper, we propose two novel time series interpolation methods specifically designed for Lebesgue sampling called ZeLiC and ZeChipC. ZeLiC is an algorithm that combines both Zero-order hold interpolation and Linear interpolation to reconstruct time series. ZeChipC is a similar idea, it is a combination of Zero-order hold and PCHIP interpolation. Zero-order hold interpolation is favourable for interpolating abrupt changes while Linear and PCHIP interpolation are more suitable for smooth transitions. In order to apply one method or the other, we have introduced a new concept called tolerated region. ZeLiC and ZeChipC include a new functionality to adapt the reconstructed signal to concave/convex regions. The proposed methods have been compared with the state-of-the-art interpolation methods using Lebesgue sampling and have offered higher average performance. Additionally, we have compared the performance of the methods using both Riemann and Lebesgue sampling using an approximate number of sampled points. The performance of the combination "Lebesgue sampling with ZeChipC interpolation method" is clearly much better than any other combination.

Arjun Pakrashi, Brian Mac Namee

Despite the success of ensemble classification methods in multi-class classification problems, ensemble methods based on approaches other than bagging have not been widely explored for multi-label classification problems. The Kalman Filter-based Heuristic Ensemble (KFHE) is an ensemble method that exploits the sensor fusion properties of the Kalman filter to combine several classifier models, and that has been shown to be very effective. This work proposes a multi-label version of KFHE, ML-KFHE, demonstrating the effectiveness of the KFHE method on multi-label datasets. Two variants are introduced based on the underlying component classifier algorithm, ML-KFHE-HOMER, and ML-KFHE-CC which uses HOMER and Classifier Chain (CC) as the underlying multi-label algorithms respectively. ML-KFHE-HOMER and ML-KFHE-CC sequentially train multiple HOMER and CC multi-label classifiers and aggregate their outputs using the sensor fusion properties of the Kalman filter. Extensive experiments and detailed analysis were performed on thirteen multi-label datasets and eight other algorithms, which included state-of-the-art ensemble methods. The results show, for both versions, the ML-KFHE framework improves the predictive performance significantly with respect to bagged combinations of HOMER (named E-HOMER), also introduced in this paper, and bagged combination of CC, Ensemble Classifier Chains (ECC), thus demonstrating the effectiveness of ML-KFHE. Also, the ML-KFHE-HOMER variant was found to perform consistently and significantly better than the compared multi-label methods including existing approaches based on ensembles.

Arjun Pakrashi, Brian Mac Namee

Multi-label classification is an approach which allows a datapoint to be labelled with more than one class at the same time. A common but trivial approach is to train individual binary classifiers per label, but the performance can be improved by considering associations within the labels. Like with any machine learning algorithm, hyperparameter tuning is important to train a good multi-label classifier model. The task of selecting the best hyperparameter settings for an algorithm is an optimisation problem. Very limited work has been done on automatic hyperparameter tuning and AutoML in the multi-label domain. This paper attempts to fill this gap by proposing a neural network algorithm, CascadeML, to train multi-label neural network based on cascade neural networks. This method requires minimal or no hyperparameter tuning and also considers pairwise label associations. The cascade algorithm grows the network architecture incrementally in a two phase process as it learns the weights using adaptive first order gradient algorithm, therefore omitting the requirement of preselecting the number of hidden layers, nodes and the learning rate. The method was tested on 10 multi-label datasets and compared with other multi-label classification algorithms. Results show that CascadeML performs very well without hyperparameter tuning.

John Mitros, Brian Mac Namee

The ubiquity of machine learning based predictive models in modern society naturally leads people to ask how trustworthy those models are? In predictive modeling, it is quite common to induce a trade-off between accuracy and interpretability. For instance, doctors would like to know how effective some treatment will be for a patient or why the model suggested a particular medication for a patient exhibiting those symptoms? We acknowledge that the necessity for interpretability is a consequence of an incomplete formalisation of the problem, or more precisely of multiple meanings adhered to a particular concept. For certain problems, it is not enough to get the answer (what), the model also has to provide an explanation of how it came to that conclusion (why), because a correct prediction, only partially solves the original problem. In this article we extend existing categorisation of techniques to aid model interpretability and test this categorisation.

Arjun Pakrashi, Brian Mac Namee

This paper introduces a new perspective on multi-class ensemble classification that considers training an ensemble as a state estimation problem. The new perspective considers the final ensemble classifier model as a static state, which can be estimated using a Kalman filter that combines noisy estimates made by individual classifier models. A new algorithm based on this perspective, the Kalman Filter-based Heuristic Ensemble (KFHE), is also presented in this paper which shows the practical applicability of the new perspective. Experiments performed on 30 datasets compare KFHE with state-of-the-art multi-class ensemble classification algorithms and show the potential and effectiveness of the new perspective and algorithm. Existing ensemble approaches trade off classification accuracy against robustness to class label noise, but KFHE is shown to be significantly better or at least as good as the state-of-the-art algorithms for datasets both with and without class label noise.

Quan Le, Oisín Boydell, Brian Mac Namee et al.

Current malware detection and classification approaches generally rely on time consuming and knowledge intensive processes to extract patterns (signatures) and behaviors from malware, which are then used for identification. Moreover, these signatures are often limited to local, contiguous sequences within the data whilst ignoring their context in relation to each other and throughout the malware file as a whole. We present a Deep Learning based malware classification approach that requires no expert domain knowledge and is based on a purely data driven approach for complex pattern and feature identification.

Mark Belford, Brian Mac Namee, Derek Greene

Topic models can provide us with an insight into the underlying latent structure of a large corpus of documents. A range of methods have been proposed in the literature, including probabilistic topic models and techniques based on matrix factorization. However, in both cases, standard implementations rely on stochastic elements in their initialization phase, which can potentially lead to different results being generated on the same corpus when using the same parameter values. This corresponds to the concept of "instability" which has previously been studied in the context of $k$-means clustering. In many applications of topic modeling, this problem of instability is not considered and topic models are treated as being definitive, even though the results may change considerably if the initialization process is altered. In this paper we demonstrate the inherent instability of popular topic modeling approaches, using a number of new measures to assess stability. To address this issue in the context of matrix factorization for topic modeling, we propose the use of ensemble learning strategies. Based on experiments performed on annotated text corpora, we show that a K-Fold ensemble strategy, combining both ensembles and structured initialization, can significantly reduce instability, while simultaneously yielding more accurate topic models.