Zolnamar Dorjsembe

Zolnamar Dorjsembe, Hung-Yi Chen, Furen Xiao et al.

MRI provides superior soft tissue contrast without ionizing radiation; however, the absence of electron density information limits its direct use for dose calculation. As a result, current radiotherapy workflows rely on combined MRI and CT acquisitions, increasing registration uncertainty and procedural complexity. Synthetic CT generation enables MRI only planning but remains challenging due to nonlinear MRI-CT relationships and anatomical variability. We propose Parallel Swin Transformer-Enhanced Med2Transformer, a 3D architecture that integrates convolutional encoding with dual Swin Transformer branches to model both local anatomical detail and long-range contextual dependencies. Multi-scale shifted window attention with hierarchical feature aggregation improves anatomical fidelity. Experiments on public and clinical datasets demonstrate higher image similarity and improved geometric accuracy compared with baseline methods. Dosimetric evaluation shows clinically acceptable performance, with a mean target dose error of 1.69%. Code is available at: https://github.com/mobaidoctor/med2transformer.

Zolnamar Dorjsembe, Hsing-Kuo Pao, Furen Xiao

This study introduces Polyp-DDPM, a diffusion-based method for generating realistic images of polyps conditioned on masks, aimed at enhancing the segmentation of gastrointestinal (GI) tract polyps. Our approach addresses the challenges of data limitations, high annotation costs, and privacy concerns associated with medical images. By conditioning the diffusion model on segmentation masks-binary masks that represent abnormal areas-Polyp-DDPM outperforms state-of-the-art methods in terms of image quality (achieving a Frechet Inception Distance (FID) score of 78.47, compared to scores above 83.79) and segmentation performance (achieving an Intersection over Union (IoU) of 0.7156, versus less than 0.6694 for synthetic images from baseline models and 0.7067 for real data). Our method generates a high-quality, diverse synthetic dataset for training, thereby enhancing polyp segmentation models to be comparable with real images and offering greater data augmentation capabilities to improve segmentation models. The source code and pretrained weights for Polyp-DDPM are made publicly available at https://github.com/mobaidoctor/polyp-ddpm.

Zolnamar Dorjsembe, Hsing-Kuo Pao, Sodtavilan Odonchimed et al.

Artificial intelligence (AI) in healthcare, especially in medical imaging, faces challenges due to data scarcity and privacy concerns. Addressing these, we introduce Med-DDPM, a diffusion model designed for 3D semantic brain MRI synthesis. This model effectively tackles data scarcity and privacy issues by integrating semantic conditioning. This involves the channel-wise concatenation of a conditioning image to the model input, enabling control in image generation. Med-DDPM demonstrates superior stability and performance compared to existing 3D brain imaging synthesis methods. It generates diverse, anatomically coherent images with high visual fidelity. In terms of dice score accuracy in the tumor segmentation task, Med-DDPM achieves 0.6207, close to the 0.6531 accuracy of real images, and outperforms baseline models. Combined with real images, it further increases segmentation accuracy to 0.6675, showing the potential of our proposed method for data augmentation. This model represents the first use of a diffusion model in 3D semantic brain MRI synthesis, producing high-quality images. Its semantic conditioning feature also shows potential for image anonymization in biomedical imaging, addressing data and privacy issues. We provide the code and model weights for Med-DDPM on our GitHub repository (https://github.com/mobaidoctor/med-ddpm/) to support reproducibility.