Kevin Brink

Skylar E. Stolte, Kyle Volle, Aprinda Indahlastari et al.

Model calibration measures the agreement between the predicted probability estimates and the true correctness likelihood. Proper model calibration is vital for high-risk applications. Unfortunately, modern deep neural networks are poorly calibrated, compromising trustworthiness and reliability. Medical image segmentation particularly suffers from this due to the natural uncertainty of tissue boundaries. This is exasperated by their loss functions, which favor overconfidence in the majority classes. We address these challenges with DOMINO, a domain-aware model calibration method that leverages the semantic confusability and hierarchical similarity between class labels. Our experiments demonstrate that our DOMINO-calibrated deep neural networks outperform non-calibrated models and state-of-the-art morphometric methods in head image segmentation. Our results show that our method can consistently achieve better calibration, higher accuracy, and faster inference times than these methods, especially on rarer classes. This performance is attributed to our domain-aware regularization to inform semantic model calibration. These findings show the importance of semantic ties between class labels in building confidence in deep learning models. The framework has the potential to improve the trustworthiness and reliability of generic medical image segmentation models. The code for this article is available at: https://github.com/lab-smile/DOMINO.

Skylar E. Stolte, Kyle Volle, Aprinda Indahlastari et al.

Deep learning has achieved the state-of-the-art performance across medical imaging tasks; however, model calibration is often not considered. Uncalibrated models are potentially dangerous in high-risk applications since the user does not know when they will fail. Therefore, this paper proposes a novel domain-aware loss function to calibrate deep learning models. The proposed loss function applies a class-wise penalty based on the similarity between classes within a given target domain. Thus, the approach improves the calibration while also ensuring that the model makes less risky errors even when incorrect. The code for this software is available at https://github.com/lab-smile/DOMINO.

Skylar E. Stolte, Kyle Volle, Aprinda Indahlastari et al.

Out-of-distribution (OOD) generalization poses a serious challenge for modern deep learning (DL). OOD data consists of test data that is significantly different from the model's training data. DL models that perform well on in-domain test data could struggle on OOD data. Overcoming this discrepancy is essential to the reliable deployment of DL. Proper model calibration decreases the number of spurious connections that are made between model features and class outputs. Hence, calibrated DL can improve OOD generalization by only learning features that are truly indicative of the respective classes. Previous work proposed domain-aware model calibration (DOMINO) to improve DL calibration, but it lacks designs for model generalizability to OOD data. In this work, we propose DOMINO++, a dual-guidance and dynamic domain-aware loss regularization focused on OOD generalizability. DOMINO++ integrates expert-guided and data-guided knowledge in its regularization. Unlike DOMINO which imposed a fixed scaling and regularization rate, DOMINO++ designs a dynamic scaling factor and an adaptive regularization rate. Comprehensive evaluations compare DOMINO++ with DOMINO and the baseline model for head tissue segmentation from magnetic resonance images (MRIs) on OOD data. The OOD data consists of synthetic noisy and rotated datasets, as well as real data using a different MRI scanner from a separate site. DOMINO++'s superior performance demonstrates its potential to improve the trustworthy deployment of DL on real clinical data.

Jincheng Zhang, Kevin Brink, Andrew R Willis

Infrared thermography has been widely used in several domains to capture and measure temperature distributions across surfaces and objects. This methodology can be further expanded to 3D applications if the spatial distribution of the temperature distribution is available. Structure from Motion (SfM) is a photometric range imaging technique that makes it possible to obtain 3D renderings from a cloud of 2D images. To explore the possibility of 3D reconstruction via SfM from infrared images, this article proposes a photometric correction model for infrared sensors based on temperature constancy. Photometric correction is accomplished by estimating the scene irradiance as the values from the solution to a differential equation for microbolometer pixel excitation with unknown coefficients and initial conditions. The model was integrated into an SfM framework and experimental evaluations demonstrate the contribution of the photometric correction for improving the estimates of both the camera motion and the scene structure. Further, experiments show that the reconstruction quality from the corrected infrared imagery achieves performance on par with state-of-the-art reconstruction using RGB sensors.

Andrew Willis, Collin Hague, Artur Wolek et al.

UAV missions often require specific geometric constraints to be satisfied between ground locations and the vehicle location. Such requirements are typical for contexts where line-of-sight must be maintained between the vehicle location and the ground control location and are also important in surveillance applications where the UAV wishes to be able to sense, e.g., with a camera sensor, a specific region within a complex geometric environment. This problem is further complicated when the ground location is generalized to a convex 2D polygonal region. This article describes the theory and implementation of a system which can quickly calculate the 3D volume that encloses all 3D coordinates from which a 2D convex planar region can be entirely viewed; referred to as a visibility volume. The proposed approach computes visibility volumes using a combination of depth map computation using GPU-acceleration and geometric boolean operations. Solutions to this problem require complex 3D geometric analysis techniques that must execute using arbitrary precision arithmetic on a collection of discontinuous and non-analytic surfaces. Post-processing steps incorporate navigational constraints to further restrict the enclosed coordinates to include both visibility and navigation constraints. Integration of sensing visibility constraints with navigational constraints yields a range of navigable space where a vehicle will satisfy both perceptual sensing and navigational needs of the mission. This algorithm then provides a synergistic perception and navigation sensitive solution yielding a volume of coordinates in 3D that satisfy both the mission path and sensing needs.

Andrew R. Willis, Kevin Brink, Kathleen Dipple

This article describes a software package called ROS georegistration intended for use with the Robot Operating System (ROS) and the Gazebo 3D simulation environment. ROSgeoregistration provides tools for the simulation, test and deployment of aerial georegistration algorithms and is made available with a link provided in the paper. A model creation package is provided which downloads multi-spectral images from the Google Earth Engine database and, if necessary, incorporates these images into a single, possibly very large, reference image. Additionally a Gazebo plugin which uses the real-time sensor pose and image formation model to generate simulated imagery using the specified reference image is provided along with related plugins for UAV relevant data. The novelty of this work is threefold: (1) this is the first system to link the massive multi-spectral imaging database of Google's Earth Engine to the Gazebo simulator, (2) this is the first example of a system that can simulate geospatially and radiometrically accurate imagery from multiple sensor views of the same terrain region, and (3) integration with other UAS tools creates a new holistic UAS simulation environment to support UAS system and subsystem development where real-world testing would generally be prohibitive. Sensed imagery and ground truth registration information is published to client applications which can receive imagery synchronously with telemetry from other payload sensors, e.g., IMU, GPS/GNSS, barometer, and windspeed sensor data. To highlight functionality, we demonstrate ROSgeoregistration for simulating Electro-Optical (EO) and Synthetic Aperture Radar (SAR) image sensors and an example use case for developing and evaluating image-based UAS position feedback, i.e., pose for image-based Guidance Navigation and Control (GNC) applications.

Sohum Misra, Kaarthik Sundar, Rajnikant Sharma et al.

This paper presents a novel data-driven navigation system to navigate an Unmanned Vehicle (UV) in GPS-denied, feature-deficient environments such as tunnels, or mines. The method utilizes landmarks that vehicle can deploy and measure range from to enable localization as the vehicle traverses its pre-defined path through the tunnel. A key question that arises in such scenario is to estimate and reduce the number of landmarks that needs to be deployed for localization before the start of the mission, given some information about the environment. The main focus is to keep the maximum position uncertainty at a desired value. In this article, we develop a novel vehicle navigation system in GPS-denied, feature-deficient environment by combining techniques from estimation, machine learning, and mixed-integer convex optimization. This article develops a novel, systematic method to perform localization and navigate the UV through the environment with minimum number of landmarks while maintaining desired localization accuracy. We also present extensive simulation experiments on different scenarios that corroborate the effectiveness of the proposed navigation system.