Eric Miller

Ege Ozsar, Misha Kilmer, Eric Miller et al.

We introduce PaLEnTIR, a significantly enhanced parametric level-set (PaLS) method addressing the restoration and reconstruction of piecewise constant objects. Our key contribution involves a unique PaLS formulation utilizing a single level-set function to restore scenes containing multi-contrast piecewise-constant objects without requiring knowledge of the number of objects or their contrasts. Unlike standard PaLS methods employing radial basis functions (RBFs), our model integrates anisotropic basis functions (ABFs), thereby expanding its capacity to represent a wider class of shapes. Furthermore, PaLEnTIR improves the conditioning of the Jacobian matrix, required as part of the parameter identification process, and consequently accelerates optimization methods. We validate PaLEnTIR's efficacy through diverse experiments encompassing sparse and limited angle of view X-ray computed tomography (2D and 3D), nonlinear diffuse optical tomography (DOT), denoising, and deconvolution tasks using both real and simulated data sets.

Farjana Sultana Mim, Shuchin Aeron, Eric Miller et al.

Identifying discourse features in student conversations is quite important for educational researchers to recognize the curricular and pedagogical variables that cause students to engage in constructing knowledge rather than merely completing tasks. The manual analysis of student conversations to identify these discourse features is time-consuming and labor-intensive, which limits the scale and scope of studies. Leveraging natural language processing (NLP) techniques can facilitate the automatic detection of these discourse features, offering educational researchers scalable and data-driven insights. However, existing studies in NLP that focus on discourse in dialogue rarely address educational data. In this work, we address this gap by introducing an annotated educational dialogue dataset of student conversations featuring knowledge construction and task production discourse. We also establish baseline models for automatically predicting these discourse properties for each turn of talk within conversations, using pre-trained large language models GPT-3.5 and Llama-3.1. Experimental results indicate that these state-of-the-art models perform suboptimally on this task, indicating the potential for future research.

Michael T. Wojnowicz, Kaitlin Gili, Preetish Rath et al.

We seek a computationally efficient model for a collection of time series arising from multiple interacting entities (a.k.a. "agents"). Recent models of temporal patterns across individuals fail to incorporate explicit system-level collective behavior that can influence the trajectories of individual entities. To address this gap in the literature, we present a new hierarchical switching-state model that can be trained in an unsupervised fashion to simultaneously learn both system-level and individual-level dynamics. We employ a latent system-level discrete state Markov chain that provides top-down influence on latent entity-level chains which in turn govern the emission of each observed time series. Recurrent feedback from the observations to the latent chains at both entity and system levels allows recent situational context to inform how dynamics unfold at all levels in bottom-up fashion. We hypothesize that including both top-down and bottom-up influences on group dynamics will improve interpretability of the learned dynamics and reduce error when forecasting. Our hierarchical switching recurrent dynamical model can be learned via closed-form variational coordinate ascent updates to all latent chains that scale linearly in the number of entities. This is asymptotically no more costly than fitting a separate model for each entity. Analysis of both synthetic data and real basketball team movements suggests our lean parametric model can achieve competitive forecasts compared to larger neural network models that require far more computational resources. Further experiments on soldier data as well as a synthetic task with 64 cooperating entities show how our approach can yield interpretable insights about team dynamics over time.

Ruijie Jiang, Julia Gouvea, Eric Miller et al.

This paper shows that a popular approach to the supervised embedding of documents for classification, namely, contrastive Word Mover's Embedding, can be significantly enhanced by adding interpretability. This interpretability is achieved by incorporating a clustering promoting mechanism into the contrastive loss. On several public datasets, we show that our method improves significantly upon existing baselines while providing interpretation to the clusters via identifying a set of keywords that are the most representative of a particular class. Our approach was motivated in part by the need to develop Natural Language Processing (NLP) methods for the \textit{novel problem of assessing student work for scientific writing and thinking} - a problem that is central to the area of (educational) Learning Sciences (LS). In this context, we show that our approach leads to a meaningful assessment of the student work related to lab reports from a biology class and can help LS researchers gain insights into student understanding and assess evidence of scientific thought processes.

Ruijie Jiang, Julia Gouvea, David Hammer et al.

Qualitative analysis of verbal data is of central importance in the learning sciences. It is labor-intensive and time-consuming, however, which limits the amount of data researchers can include in studies. This work is a step towards building a statistical machine learning (ML) method for achieving an automated support for qualitative analyses of students' writing, here specifically in score laboratory reports in introductory biology for sophistication of argumentation and reasoning. We start with a set of lab reports from an undergraduate biology course, scored by a four-level scheme that considers the complexity of argument structure, the scope of evidence, and the care and nuance of conclusions. Using this set of labeled data, we show that a popular natural language modeling processing pipeline, namely vector representation of words, a.k.a word embeddings, followed by Long Short Term Memory (LSTM) model for capturing language generation as a state-space model, is able to quantitatively capture the scoring, with a high Quadratic Weighted Kappa (QWK) prediction score, when trained in via a novel contrastive learning set-up. We show that the ML algorithm approached the inter-rater reliability of human analysis. Ultimately, we conclude, that machine learning (ML) for natural language processing (NLP) holds promise for assisting learning sciences researchers in conducting qualitative studies at much larger scales than is currently possible.

Verena Kaynig, Amelio Vazquez-Reina, Seymour Knowles-Barley et al.

Automated sample preparation and electron microscopy enables acquisition of very large image data sets. These technical advances are of special importance to the field of neuroanatomy, as 3D reconstructions of neuronal processes at the nm scale can provide new insight into the fine grained structure of the brain. Segmentation of large-scale electron microscopy data is the main bottleneck in the analysis of these data sets. In this paper we present a pipeline that provides state-of-the art reconstruction performance while scaling to data sets in the GB-TB range. First, we train a random forest classifier on interactive sparse user annotations. The classifier output is combined with an anisotropic smoothing prior in a Conditional Random Field framework to generate multiple segmentation hypotheses per image. These segmentations are then combined into geometrically consistent 3D objects by segmentation fusion. We provide qualitative and quantitative evaluation of the automatic segmentation and demonstrate large-scale 3D reconstructions of neuronal processes from a $\mathbf{27,000}$ $\mathbf{μm^3}$ volume of brain tissue over a cube of $\mathbf{30 \; μm}$ in each dimension corresponding to 1000 consecutive image sections. We also introduce Mojo, a proofreading tool including semi-automated correction of merge errors based on sparse user scribbles.