Yingfeng Wang

Yingfeng Wang, Yuxuan Xiao, Shengcai Liao

Many vision applications require identity consistency beyond strict biometric recognition, especially under non-frontal views or when facial cues are missing. However, conventional face recognition models enforce intra-identity invariance, collapsing appearance variations such as hairstyle or styling changes into a single representation, limiting their use in appearance-sensitive scenarios. To address this limitation, we introduce Head Similarity, a new formulation that extends identity-centric recognition to structured whole-head similarity modeling. Our approach explicitly captures intra-identity appearance variation and enforces hierarchical similarity ordering across identity and appearance states, enabling meaningful comparison even under occlusion or rear-view conditions. We construct a large-scale benchmark from long-form videos with weakly-supervised appearance states, covering diverse poses, occlusions, and temporal changes. As a first step, we develop a simple yet effective framework that jointly models identity discrimination and appearance-sensitive similarity through hierarchical supervision and identity-aware distillation. Experiments show that conventional face recognition models fail to capture appearance-dependent similarity, while our approach demonstrates the feasibility of structured whole-head similarity modeling.

Wei Ruan, Yanjun Lyu, Jing Zhang et al.

With the rapid advancements in large language model (LLM) technology and the emergence of bioinformatics-specific language models (BioLMs), there is a growing need for a comprehensive analysis of the current landscape, computational characteristics, and diverse applications. This survey aims to address this need by providing a thorough review of BioLMs, focusing on their evolution, classification, and distinguishing features, alongside a detailed examination of training methodologies, datasets, and evaluation frameworks. We explore the wide-ranging applications of BioLMs in critical areas such as disease diagnosis, drug discovery, and vaccine development, highlighting their impact and transformative potential in bioinformatics. We identify key challenges and limitations inherent in BioLMs, including data privacy and security concerns, interpretability issues, biases in training data and model outputs, and domain adaptation complexities. Finally, we highlight emerging trends and future directions, offering valuable insights to guide researchers and clinicians toward advancing BioLMs for increasingly sophisticated biological and clinical applications.

Meng Tsai, Alexzander Dwyer, Estelle Nuckels et al.

Database search is a widely used approach for identifying metabolites from tandem mass spectra (MS/MS). In this strategy, an experimental spectrum is matched against a user-specified database of candidate metabolites, and candidates are ranked such that true metabolite-spectrum matches receive the highest scores. Machine-learning methods have been widely incorporated into database-search-based identification tools and have substantially improved performance. To further improve identification accuracy, we propose a new framework for generating negative training samples. The framework first uses autoencoders to learn latent representations of metabolite structures and MS/MS spectra, thereby recasting metabolite-spectrum matching as matching between latent vectors. It then uses a GAN to generate latent vectors of decoy metabolites and constructs decoy metabolite-spectrum matches as negative samples for training. Experimental results show that our tool, MS2MetGAN, achieves better overall performance than existing metabolite identification methods.

Junhao Chen, Yifan Zhou, Hanqi Jiang et al.

Quantum compute is scaling fast, from cloud QPUs to high throughput GPU simulators, making it timely to prototype quantum NLP beyond toy tasks. However, devices remain qubit limited and depth limited, training can be unstable, and classical attention is compute and memory heavy. This motivates compact, phase aware quantum token mixers that stabilize amplitudes and scale to long sequences. We present CLAQS, a compact, fully quantum token mixer for text classification that jointly learns complex-valued mixing and nonlinear transformations within a unified quantum circuit. To enable stable end-to-end optimization, we apply l1 normalization to regulate amplitude scaling and introduce a two-stage parameterized quantum architecture that decouples shared token embeddings from a window-level quantum feed-forward module. Operating under a sliding-window regime with document-level aggregation, CLAQS requires only eight data qubits and shallow circuits, yet achieves 91.64% accuracy on SST-2 and 87.08% on IMDB, outperforming both classical Transformer baselines and strong hybrid quantum-classical counterparts.

Afrar Jahin, Yi Pan, Yingfeng Wang et al.

Although recent advances in quantum machine learning (QML) offer significant potential for enhancing generative models, particularly in molecular design, a large array of classical approaches still face challenges in achieving high fidelity and validity. In particular, the integration of QML with sequence-based tasks, such as Simplified Molecular Input Line Entry System (SMILES) string reconstruction, remains underexplored and usually suffers from fidelity degradation. In this work, we propose a hybrid quantum-classical architecture for SMILES reconstruction that integrates quantum encoding with classical sequence modeling to improve quantum fidelity and classical similarity. Our approach achieves a quantum fidelity of approximately 84% and a classical reconstruction similarity of 60%, surpassing existing quantum baselines. Our work lays a promising foundation for future QML applications, striking a balance between expressive quantum representations and classical sequence models and catalyzing broader research on quantum-aware sequence models for molecular and drug discovery.