Stefano Montanelli

Darya Shlyk, Stefano Montanelli, Lawrence Hunter

Despite recent progress, Biomedical Entity Linking (BEL) with large language models (LLMs) remains computationally inefficient and challenging to deploy in practical settings. In this work, we demonstrate that instruction-tuning of open-source generative models can offer an effective solution when applied at the re-ranking stage of the BEL pipeline. We propose a set-wise instruction-tuning formulation that enables fast and accurate candidate selection. Our method demonstrates strong performance on multiple BEL benchmarks, yielding significant improvements in linking accuracy (3%-24%) while reducing inference time compared to the state-of-the-art. We integrate our generative re-ranker into BeLink, a modular, end-to-end system designed for practical real-world BEL applications.

Stefano Montanelli, Francesco Periti

Semantic Shift Detection (SSD) is the task of identifying, interpreting, and assessing the possible change over time in the meanings of a target word. Traditionally, SSD has been addressed by linguists and social scientists through manual and time-consuming activities. In the recent years, computational approaches based on Natural Language Processing and word embeddings gained increasing attention to automate SSD as much as possible. In particular, over the past three years, significant advancements have been made almost exclusively based on word contextualised embedding models, which can handle the multiple usages/meanings of the words and better capture the related semantic shifts. In this paper, we survey the approaches based on contextualised embeddings for SSD (i.e., CSSDetection) and we propose a classification framework characterised by meaning representation, time-awareness, and learning modality dimensions. The framework is exploited i) to review the measures for shift assessment, ii) to compare the approaches on performance, and iii) to discuss the current issues in terms of scalability, interpretability, and robustness. Open challenges and future research directions about CSSDetection are finally outlined.

Silvana Castano, Alfio Ferrara, Stefano Montanelli et al.

Modern data mining applications require to perform incremental clustering over dynamic datasets by tracing temporal changes over the resulting clusters. In this paper, we propose A-Posteriori affinity Propagation (APP), an incremental extension of Affinity Propagation (AP) based on cluster consolidation and cluster stratification to achieve faithfulness and forgetfulness. APP enforces incremental clustering where i) new arriving objects are dynamically consolidated into previous clusters without the need to re-execute clustering over the entire dataset of objects, and ii) a faithful sequence of clustering results is produced and maintained over time, while allowing to forget obsolete clusters with decremental learning functionalities. Four popular labeled datasets are used to test the performance of APP with respect to benchmark clustering performances obtained by conventional AP and Incremental Affinity Propagation based on Nearest neighbor Assignment (IAPNA) algorithms. Experimental results show that APP achieves comparable clustering performance while enforcing scalability at the same time.