Boyi Zeng

Boyi Zeng, Yiqin Hao, Zitong Wang et al.

Self-attention selects information freely across the sequence, but across depth, Transformers merely add each layer's output to the residual stream, so later layers cannot selectively reuse earlier-layer representations. Recent cross-layer methods improve this flow but operate on hidden states outside attention, adding state beyond the key-value cache at inference--a cost that becomes increasingly salient as modern LLMs compress the cache with grouped-query and multi-head latent attention. We introduce Depth-Attention, which performs this selection inside the attention module itself: before a layer attends over the sequence, its query attends over the keys of earlier layers at the same token position and mixes their values into the value that self-attention then reads. Because Depth-Attention reuses the standard attention queries, keys, and value-cache slots, storing depth-mixed values in place of the original values, it adds no parameters and introduces no persistent inference state beyond the standard key-value cache--the same cache size as a vanilla decoder and less than hidden-state-based cross-layer methods. On Qwen3-style decoders at 1.5B and 3B parameters, Depth-Attention attains the lowest perplexity and the highest average downstream accuracy, improving over the vanilla Transformer by up to 2.3 accuracy points and surpassing strong cross-layer baselines in perplexity and average accuracy, while adding under 0.01% extra arithmetic FLOPs and no additional persistent inference state. The gains hold from 360M to 3B parameters and extend to looped Transformers.

Zhouhan Lin, Cheng Deng, Le Zhou et al.

Large language models (LLMs) have achieved huge success for their general knowledge and ability to solve a wide spectrum of tasks in natural language processing (NLP). Due to their impressive abilities, LLMs have shed light on potential inter-discipline applications to foster scientific discoveries of a specific domain by using artificial intelligence (AI for science, AI4S). In the meantime, utilizing NLP techniques in geoscience research and practice is wide and convoluted, contributing from knowledge extraction and document classification to question answering and knowledge discovery. In this work, we take the initial step to leverage LLM for science, through a rather straightforward approach. We try to specialize an LLM into geoscience, by further pre-training the model with a vast amount of texts in geoscience, as well as supervised fine-tuning (SFT) the resulting model with our custom collected instruction tuning dataset. These efforts result in a model GeoGalactica consisting of 30 billion parameters. To our best knowledge, it is the largest language model for the geoscience domain. More specifically, GeoGalactica is from further pre-training of Galactica. We train GeoGalactica over a geoscience-related text corpus containing 65 billion tokens, preserving as the largest geoscience-specific text corpus. Then we fine-tune the model with 1 million pairs of instruction-tuning data consisting of questions that demand professional geoscience knowledge to answer. In this technical report, we will illustrate in detail all aspects of GeoGalactica, including data collection, data cleaning, base model selection, pre-training, SFT, and evaluation. We open-source our data curation tools and the checkpoints of GeoGalactica during the first 3/4 of pre-training.

Boyi Zeng, Lizheng Wang, Yuncong Hu et al.

Protecting the copyright of large language models (LLMs) has become crucial due to their resource-intensive training and accompanying carefully designed licenses. However, identifying the original base model of an LLM is challenging due to potential parameter alterations. In this study, we introduce HuRef, a human-readable fingerprint for LLMs that uniquely identifies the base model without interfering with training or exposing model parameters to the public. We first observe that the vector direction of LLM parameters remains stable after the model has converged during pretraining, with negligible perturbations through subsequent training steps, including continued pretraining, supervised fine-tuning, and RLHF, which makes it a sufficient condition to identify the base model. The necessity is validated by continuing to train an LLM with an extra term to drive away the model parameters' direction and the model becomes damaged. However, this direction is vulnerable to simple attacks like dimension permutation or matrix rotation, which significantly change it without affecting performance. To address this, leveraging the Transformer structure, we systematically analyze potential attacks and define three invariant terms that identify an LLM's base model. Due to the potential risk of information leakage, we cannot publish invariant terms directly. Instead, we map them to a Gaussian vector using an encoder, then convert it into a natural image using StyleGAN2, and finally publish the image. In our black-box setting, all fingerprinting steps are internally conducted by the LLMs owners. To ensure the published fingerprints are honestly generated, we introduced Zero-Knowledge Proof (ZKP). Experimental results across various LLMs demonstrate the effectiveness of our method. The code is available at https://github.com/LUMIA-Group/HuRef.

Boyi Zeng, Shixiang Song, Siyuan Huang et al.

Humans ponder before articulating complex sentence elements, enabling deeper cognitive processing through focused effort. In this work, we introduce this pondering process into language models by repeatedly invoking the forward process within a single token generation step. During pondering, instead of generating an actual token sampled from the prediction distribution, the model ponders by yielding a weighted sum of all token embeddings according to the predicted token distribution. The generated embedding is then fed back as input for another forward pass. We show that the model can learn to ponder in this way through self-supervised learning, without any human annotations. Experiments across three widely used open-source architectures-GPT-2, Pythia, and LLaMA-and extensive downstream task evaluations demonstrate the effectiveness and generality of our method. For language modeling tasks, pondering language models achieve performance comparable to vanilla models with twice the number of parameters. On 9 downstream benchmarks, our pondering-enhanced Pythia models significantly outperform the official Pythia models. Notably, PonderingPythia-2.8B surpasses Pythia-6.9B, and PonderingPythia-1B is comparable to TinyLlama-1.1B, which is trained on 10 times more data. The code is available at https://github.com/LUMIA-Group/PonderingLM.

Boyi Zeng, Yiqin Hao, He Li et al.

Scaling large language models by increasing parameters and training data is increasingly constrained by limited high-quality corpora and rising communication costs. This work explores an alternative axis: increasing per-token computation without expanding parameters, by internalizing latent Chain-of-Thought (CoT) into pretraining. We propose Pretraining with Token-Level Adaptive Latent CoT (adaptive latent CoT), where the model generates a variable-length latent CoT trajectory before emitting each token -- allocating longer trajectories to difficult tokens and shorter (or even zero) trajectories to easy ones. Importantly, this behavior emerges naturally from one-stage pretraining on general text and reduces computation in both training and inference via token-wise adaptive halting. Experiments with Llama architectures show that adaptive latent CoT consistently improves language modeling perplexity and broad downstream accuracy, even with fewer training FLOPs than prior recurrent baselines.

Boyi Zeng, Lin Chen, Ziwei He et al.

Protecting the intellectual property of large language models (LLMs) is crucial, given the substantial resources required for their training. Consequently, there is an urgent need for both model owners and third parties to determine whether a suspect LLM is trained from scratch or derived from an existing base model. However, the intensive post-training processes that models typically undergo-such as supervised fine-tuning, extensive continued pretraining, reinforcement learning, multi-modal extension, pruning, and upcycling-pose significant challenges to reliable identification. In this work, we propose a training-free fingerprinting method based on weight matrices. We leverage the Linear Assignment Problem (LAP) and an unbiased Centered Kernel Alignment (CKA) similarity to neutralize the effects of parameter manipulations, yielding a highly robust and high-fidelity similarity metric. On a comprehensive testbed of 60 positive and 90 negative model pairs, our method demonstrates exceptional robustness against all six aforementioned post-training categories while exhibiting a near-zero risk of false positives. By achieving perfect scores on all classification metrics, our approach establishes a strong basis for reliable model lineage verification. Moreover, the entire computation completes within 30s on an NVIDIA 3090 GPU. The code is available at https://github.com/LUMIA-Group/AWM.

Shixiang Song, He Li, Zitong Wang et al.

Test-time scaling via recurrent/iterative Transformers enables large language models to spend more computation at inference, but most pretrained recurrent LMs run a fixed number of iterations, wasting compute on easy tokens and lacking token-wise adaptivity. Following the core idea of Adaptive Computation Time(ACT) and Early Exit(EE), we propose AdaPonderLM, a self-supervised recurrent language model that learns token-wise early exiting during pretraining without manually tuned per-token/per-layer pruning ratios. AdaPonderLM uses iteration-specific MLP gates with a monotonic halting mask to decide when each token stops recurring, and introduces a KV reuse mechanism that reuses cached key/value states for halted tokens, ensuring train--test consistency and practical acceleration. Across Pythia backbones from 70M to 410M (pretraining) and up to 2.8B (continued pretraining), AdaPonderLM reduces inference compute at about 10% while maintaining comparable language modeling perplexity and competitive downstream accuracy. Our analysis shows the learned gates allocate more computation to high-NLL (hard) tokens, exhibiting adaptive computation time behavior in a fully self-supervised setting. Meanwhile, under iso-FLOPs, the learned halting policy consistently outperforms fixed pruning, showing AdaPonderLM allocates compute to the right tokens rather than just reducing average depth.

He Li, Feichen Song, Boyi Zeng et al.

Test-time scaling has shown that allocating more additional computation at inference can improve generation quality, motivating a natural follow-up question: where should this computation be spent? Building on this insight, we introduce PonderLM-3, a pretraining framework for token-wise adaptive pondering that learns to selectively allocate additional computation under purely self-supervised objectives, built on top of the PonderLM-2 backbone. This makes additional inference computation an allocatable per-token resource, so tokens receive more computation only when it is beneficial, rather than paying a uniform extra cost. To make this allocation learnable while maintaining train-inference consistency, PonderLM-3 injects a differentiable attention mask during pretraining and pairs it with a matching hard pruning rule at inference. PonderLM-3 defines a stronger Pareto frontier: compared with existing recursive or adaptive baselines, it achieves lower pretraining perplexity at equal inference FLOPs. On downstream benchmarks, PonderLM-3 attains comparable performance to fixed-step PonderLM-2 under the same maximum number of additional computation steps, while using fewer inference FLOPs in practice. Overall, PonderLM-3 provides an end-to-end differentiable and train-inference consistent framework for token-wise adaptive computation, enabling additional inference compute to be allocated where it is most useful rather than paid uniformly by every token.

Jushi Kai, Boyi Zeng, Yixuan Wang et al.

Frequency-domain compression has proven effective in reducing redundancies for spatial signals. In this work, we propose FreqKV, a novel frequency domain key-value (KV) compression technique that enables efficient context window extension for decoder-only large language models (LLMs). Our approach is motivated by a key observation that, in the frequency domain, the energy distribution of the KV cache is predominantly concentrated in low-frequency components. By discarding high-frequency components, we achieve efficient compression of the KV cache with minimal information loss. FreqKV iteratively compresses the increasing KV cache to a fixed size in the frequency domain, allowing models to process lengthy contexts efficiently. Introducing no additional parameters or architectural modifications, FreqKV is applicable to both fine-tuning and inference. With minimal fine-tuning, LLMs can learn to leverage the limited cache that is compressed in the frequency domain and extend the context window. Experiments on a range of long context language modeling and understanding tasks demonstrate the efficiency and effectiveness of the proposed method.

Boyi Zeng, He Li, Shixiang Song et al.

The remarkable success of Chain-of-Thought (CoT), which enhances performance by scaling generation steps at test-time, inspires us to ask: can we leverage a similar scaling of computational steps during pretraining to improve the generation of each individual token? To address this, we propose a novel pre-training methodology: Pretraining Language Models with Latent Thoughts (PonderLM-2). Our approach pretrains a language model (LM) to first generate an intermediate latent thought-the last hidden state of the current position-which is then used as input to predict the actual subsequent token. This additional computational step enables the LM to refine its prediction within unconstrained continuous space. Our experiments demonstrate that, at an identical inference cost, a LM that generates one additional latent thought per token outperforms a standard model with double the parameters. For instance, our PonderLM-2-Pythia-1.4B, pretrained on 300B tokens from the Pile, significantly surpasses the vanilla Pythia-2.8B trained on the same data on both language modeling and a range of general downstream tasks. Furthermore, increasing the number of latent thoughts generated before each actual token-forming a chain analogous to CoT-consistently improves the model's performance.