Jingyi Zhao

Jingyi Zhao, Linxin Yang, Haohua Zhang et al.

A major bottleneck in scenario-based Sample Average Approximation (SAA) for stochastic programming (SP) is the cost of solving an exact second-stage problem for every scenario, especially when each scenario contains an NP-hard combinatorial structure. This has led much of the SP literature to restrict the second stage to linear or simplified models. We develop a GPU-based framework that makes structured integer recourse operators tractable at scale. The key innovation is a set of hardware-aware, scenario-batched GPU kernels that expose parallelism across scenarios, dynamic-programming (DP) layers, and route or action options, enabling Bellman updates to be executed in a single pass over more than 1,000,000 realizations. We evaluate the approach in two representative SP settings: a vectorized split operator for stochastic vehicle routing and a DP for inventory reinsertion. Implementation scales nearly linearly in the number of scenarios and achieves a one-two to four-five orders of magnitude speedup, allowing far larger scenario sets and reliably stronger first-stage decisions. The computational leverage directly improves decision quality: much larger scenario sets and many more first-stage candidates can be evaluated within fixed time budgets, consistently yielding stronger SAA solutions. Our results show that structured integer recourse operators are tractable at scales previously considered impossible, providing a practical path to large-scale, realistic stochastic discrete optimization.

Ze Zheng, Ruhui Ni, Jingyi Zhao et al.

Spatial photonic Ising machines (SPIMs) based on spatial light modulators (SLMs) have emerged as highly effective solvers for many tasks, including combinatorial optimization problems and spin-glass simulations. However, traditional SPIMs relying solely on the simulated annealing algorithm require a large number of measurement-feedback iterations to find a relatively optimal solution in complex energy landscapes, suffering from slow convergence and high time cost. Here, we propose an optical genetic-simulated annealing hybrid algorithm to accelerate the ground-state search of SPIMs. GA conducts a global coarse-grained search in the early iteration stage, while SA performs fine-grained local refinement in the late stage. Numerical simulations show that our method enables a higher solution quality of full-rank Max-Cut problems than pure GA or SA at different scales. We also experimentally demonstrate its superiority over conventional algorithms on a gauge-transformation time-division multiplexing SPIM for high-rank optimization problems under the same iteration budget. Our approach can be further developed with other advanced metaheuristic algorithms toward intelligent optical Ising computing systems.

Chuan Qin, Xin Chen, Chengrui Wang et al.

In recent years, the rapid advancement of Artificial Intelligence (AI) technologies, particularly Large Language Models (LLMs), has revolutionized the paradigm of scientific discovery, establishing AI-for-Science (AI4Science) as a dynamic and evolving field. However, there is still a lack of an effective framework for the overall assessment of AI4Science, particularly from a holistic perspective on data quality and model capability. Therefore, in this study, we propose SciHorizon, a comprehensive assessment framework designed to benchmark the readiness of AI4Science from both scientific data and LLM perspectives. First, we introduce a generalizable framework for assessing AI-ready scientific data, encompassing four key dimensions: Quality, FAIRness, Explainability, and Compliance-which are subdivided into 15 sub-dimensions. Drawing on data resource papers published between 2018 and 2023 in peer-reviewed journals, we present recommendation lists of AI-ready datasets for Earth, Life, and Materials Sciences, making a novel and original contribution to the field. Concurrently, to assess the capabilities of LLMs across multiple scientific disciplines, we establish 16 assessment dimensions based on five core indicators Knowledge, Understanding, Reasoning, Multimodality, and Values spanning Mathematics, Physics, Chemistry, Life Sciences, and Earth and Space Sciences. Using the developed benchmark datasets, we have conducted a comprehensive evaluation of over 50 representative open-source and closed source LLMs. All the results are publicly available and can be accessed online at www.scihorizon.cn/en.

Yuxuan Ou, Jingyi Zhao, Austin Tripp et al.

Lipid nanoparticles (LNPs) are vital in modern biomedicine, enabling the effective delivery of mRNA for vaccines and therapies by protecting it from rapid degradation. Among the components of LNPs, ionizable lipids play a key role in RNA protection and facilitate its delivery into the cytoplasm. However, designing ionizable lipids is complex. Deep generative models can accelerate this process and explore a larger candidate space compared to traditional methods. Due to the structural differences between lipids and small molecules, existing generative models used for small molecule generation are unsuitable for lipid generation. To address this, we developed a deep generative model specifically tailored for the discovery of ionizable lipids. Our model generates novel ionizable lipid structures and provides synthesis paths using synthetically accessible building blocks, addressing synthesizability. This advancement holds promise for streamlining the development of lipid-based delivery systems, potentially accelerating the deployment of new therapeutic agents, including mRNA vaccines and gene therapies.

Jingyi Zhao, Daqian Shi, Zhengda Wang et al.

Intelligent wearable systems are at the forefront of precision medicine and play a crucial role in enhancing human-machine interaction. Traditional devices often encounter limitations due to their dependence on empirical material design and basic signal processing techniques. To overcome these issues, we introduce the concept of Human-Symbiotic Health Intelligence (HSHI), which is a framework that integrates multi-modal sensor networks with edge-cloud collaborative computing and a hybrid approach to data and knowledge modeling. HSHI is designed to adapt dynamically to both inter-individual and intra-individual variability, transitioning health management from passive monitoring to an active collaborative evolution. The framework incorporates AI-driven optimization of materials and micro-structures, provides robust interpretation of multi-modal signals, and utilizes a dual mechanism that merges population-level insights with personalized adaptations. Moreover, the integration of closed-loop optimization through reinforcement learning and digital twins facilitates customized interventions and feedback. In general, HSHI represents a significant shift in healthcare, moving towards a model that emphasizes prevention, adaptability, and a harmonious relationship between technology and health management.

Zhengda Wang, Daqian Shi, Jingyi Zhao et al.

Artificial intelligence (AI) is reshaping modern healthcare by advancing disease diagnosis, treatment decision-making, and biomedical research. Among AI technologies, large language models (LLMs) have become especially impactful, enabling deep knowledge extraction and semantic reasoning from complex medical texts. However, effective clinical decision support requires knowledge in structured, interoperable formats. Knowledge graphs serve this role by integrating heterogeneous medical information into semantically consistent networks. Yet, current clinical knowledge graphs still depend heavily on manual curation and rule-based extraction, which is limited by the complexity and contextual ambiguity of medical guidelines and literature. To overcome these challenges, we propose an automated framework that combines retrieval-augmented generation (RAG) with LLMs to construct medical indicator knowledge graphs. The framework incorporates guideline-driven data acquisition, ontology-based schema design, and expert-in-the-loop validation to ensure scalability, accuracy, and clinical reliability. The resulting knowledge graphs can be integrated into intelligent diagnosis and question-answering systems, accelerating the development of AI-driven healthcare solutions.

Jingyi Zhao, Haoxiang Yang, Yang Liu

The transition to electric vehicles (EVs) is critical to achieving sustainable transportation, but challenges such as limited driving range and insufficient charging infrastructure have hindered the widespread adoption of EVs, especially in time-sensitive logistics such as medical transportation. This paper presents a new model to break through this barrier by combining wireless mobile charging technology with optimization. We propose the Wireless Mobile Charging Electric Vehicle Routing Problem (WMC-EVRP), which enables Medical Transportation Electric Vehicles (MTEVs) to be charged while traveling via Mobile Charging Carts (MCTs). This eliminates the time wastage of stopping for charging and ensures uninterrupted operation of MTEVs for such time-sensitive transportation problems. However, in this problem, the decisions of these two types of heterogeneous vehicles are coupled with each other, which greatly increases the difficulty of vehicle routing optimizations. To address this complex problem, we develop a mathematical model and a tailored meta-heuristic algorithm that combines Bit Mask Dynamic Programming (BDP) and Large Neighborhood Search (LNS). The BDP approach efficiently optimizes charging strategies, while the LNS framework utilizes custom operators to optimize the MTEV routes under capacity and synchronization constraints. Our approach outperforms traditional solvers in providing solutions for medium and large instances. Using actual hospital locations in Singapore as data, we validated the practical applicability of the model through extensive experiments and provided important insights into minimizing costs and ensuring the timely delivery of healthcare services.

Ruiqi Zhang, Hao Zhu, Jingyi Zhao et al.

3D classification with point cloud input is a fundamental problem in 3D vision. However, due to the discrete nature and the insufficient material description of point cloud representations, there are ambiguities in distinguishing wire-like and flat surfaces, as well as transparent or reflective objects. To address these issues, we propose Gaussian Splatting (GS) point cloud-based 3D classification. We find that the scale and rotation coefficients in the GS point cloud help characterize surface types. Specifically, wire-like surfaces consist of multiple slender Gaussian ellipsoids, while flat surfaces are composed of a few flat Gaussian ellipsoids. Additionally, the opacity in the GS point cloud represents the transparency characteristics of objects. As a result, ambiguities in point cloud-based 3D classification can be mitigated utilizing GS point cloud as input. To verify the effectiveness of GS point cloud input, we construct the first real-world GS point cloud dataset in the community, which includes 20 categories with 200 objects in each category. Experiments not only validate the superiority of GS point cloud input, especially in distinguishing ambiguous objects, but also demonstrate the generalization ability across different classification methods.

Jingyi Zhao, Yuxuan Ou, Austin Tripp et al.

Ionizable lipids are essential in developing lipid nanoparticles (LNPs) for effective messenger RNA (mRNA) delivery. While traditional methods for designing new ionizable lipids are typically time-consuming, deep generative models have emerged as a powerful solution, significantly accelerating the molecular discovery process. However, a practical challenge arises as the molecular structures generated can often be difficult or infeasible to synthesize. This project explores Monte Carlo tree search (MCTS)-based generative models for synthesizable ionizable lipids. Leveraging a synthetically accessible lipid building block dataset and two specialized predictors to guide the search through chemical space, we introduce a policy network guided MCTS generative model capable of producing new ionizable lipids with available synthesis pathways.