Tianxiang Xu

Tianxiang Xu, Jiayi Liu, Yixuan Tong et al.

While reinforcement learning for large language model alignment has progressed rapidly in recent years, transferring these paradigms to high-stakes medical question answering reveals a fundamental paradigm mismatch. Reinforcement Learning from Human Feedback relies on preference annotations that are prohibitively expensive and often fail to reflect the absolute correctness of medical facts. Reinforcement Learning from Verifiable Rewards lacks effective automatic verifiers and struggles to handle complex clinical contexts. Meanwhile, medical alignment requires the simultaneous optimization of correctness, safety, and compliance, yet multi-objective heterogeneous reward signals are prone to scale mismatch and optimization conflicts. To address these challenges, we propose a robust medical alignment paradigm. We first construct a holistic multi-dimensional medical alignment matrix that decomposes alignment objectives into four categories: fundamental capabilities, expert knowledge, online feedback, and format specifications. Within each category, we establish a closed loop of where observable metrics inform attributable diagnosis, which in turn drives optimizable rewards, thereby providing fine-grained, high-resolution supervision signals for subsequent iterative optimization. To resolve gradient domination and optimization instability problem caused by heterogeneous signals, we further propose a unified optimization mechanism. This mechanism employs Reference-Frozen Normalization to align reward scales and implements a Tri-Factor Adaptive Dynamic Weighting strategy to achieve collaborative optimization that is weakness-oriented, risk-prioritized, and redundancy-reducing. Experimental results demonstrate the effectiveness of our proposed paradigm in real-world medical scenario evaluations, establishing a new paradigm for complex alignment in vertical domains.

Tianxiang Xu, Xiaoyan Zhu, Xin Lai et al.

Software defect detection is a critical task in software engineering. However, no prior studies have specifically addressed defect detection in bioinformatics software. Given that the performance of defect detection tasks is primarily influenced by both models and datasets, our experiments controlled for model-related factors and confirmed the limitations of existing datasets in bioinformatics software. To address this issue, we introduce BioDefect, the first dataset specifically designed for defect detection in bioinformatics software, aiming to overcome the limitations of existing datasets in this context. Unlike prior datasets, BioDefect includes complete source code repositories, preserving the actual contextual information of defective code, thereby more accurately reflecting real-world defect scenarios in bioinformatics software. Additionally, BioDefect mitigates issues related to label inconsistency and data leakage, ensuring high data quality and experimental reliability. To evaluate the effectiveness of BioDefect, we conduct a systematic assessment on nine language models (LMs), including DeepSeek-R1. The results demonstrate that BioDefect significantly enhances defect detection performance for bioinformatics software. Compared to existing datasets, BioDefect achieves an average F1-score improvement of 29.61% to 38.04% across all models, highlighting its superior advantages. This study fills a critical research gap in bioinformatics software defect detection, laying a foundation for future studies in this field and offering new insights for improving bioinformatics software quality assurance.

Chak-Wing Mak, Guanyu Zhu, Boyi Zhang et al.

Modern foundational Multimodal Large Language Models (MLLMs) and video world models have advanced significantly in mathematical, common-sense, and visual reasoning, but their grasp of the underlying physics remains underexplored. Existing benchmarks attempting to measure this matter rely on synthetic, Visual Question Answer templates or focus on perceptual video quality that is tangential to measuring how well the video abides by physical laws. To address this fragmentation, we introduce PhysicsMind, a unified benchmark with both real and simulation environments that evaluates law-consistent reasoning and generation over three canonical principles: Center of Mass, Lever Equilibrium, and Newton's First Law. PhysicsMind comprises two main tasks: i) VQA tasks, testing whether models can reason and determine physical quantities and values from images or short videos, and ii) Video Generation(VG) tasks, evaluating if predicted motion trajectories obey the same center-of-mass, torque, and inertial constraints as the ground truth. A broad range of recent models and video generation models is evaluated on PhysicsMind and found to rely on appearance heuristics while often violating basic mechanics. These gaps indicate that current scaling and training are still insufficient for robust physical understanding, underscoring PhysicsMind as a focused testbed for physics-aware multimodal models. Our data will be released upon acceptance.

Tianxiang Xu, Xiaoyan Zhu, Xin Lai et al.

Ensuring consistency between research papers and their corresponding software implementations is fundamental to software reliability and scientific reproducibility. However, this problem remains underexplored, particularly in the domain of bioinformatics, where discrepancies between methodological descriptions in papers and their actual code implementations are prevalent. To address this gap, this paper introduces a new task, namely paper-code consistency detection, and curates a collection of 48 bioinformatics software projects along with their associated publications. We systematically align sentence-level algorithmic descriptions from papers with function-level code snippets. Combined with expert annotations and a hybrid negative sampling strategy, we construct the first benchmark dataset in the bioinformatics domain tailored to this task, termed BioCon. Based on this benchmark, we further propose a cross-modal consistency detection framework designed to model the semantic relationships between natural language descriptions and code implementations. The framework adopts a unified input representation and leverages pre-trained models to capture deep semantic alignment between papers and code. To mitigate the effects of class imbalance and hard samples, we incorporate a weighted focal loss to enhance model robustness. Experimental results demonstrate that our framework effectively identifies consistency between papers and code in bioinformatics, achieving an accuracy of 0.9056 and an F1 score of 0.8011. Overall, this study opens a new research direction for paper-code consistency analysis and lays the foundation for automated reproducibility assessment and cross-modal understanding in scientific software.

Tianxiang Xu, Xiaoyan Zhu, Xin Lai et al.

Text classification models are typically trained via supervised fine-tuning (SFT). However, SFT essentially performs behavior cloning from instance-wise labels and thus fails to adequately capture relative preference relations among samples, which limits the model's ability to shape decision boundaries and calibrate predictive confidence. In this paper, we propose ClaHF, a human feedback-inspired reinforcement learning (RL) framework for text classification that integrates preference modeling and RL optimization into the classification pipeline without requiring additional human annotations. Unlike prior work that relies solely on instance-wise supervision, ClaHF constructs multiple candidate predictions together with their relative ranking relations, and jointly models the Top-1 preference and the ordering among non-optimal candidates within a reward model (RM). This design converts conventional label supervision into preference signals that are directly applicable to policy optimization. We conduct systematic evaluations on eight classification tasks spanning three categories of scenarios. Results demonstrate that ClaHF consistently improves both classification performance and confidence calibration across diverse language models (LMs). The data and code are available at https://anonymous.4open.science/r/ClaHF.

Quanjiang Li, Zhiming Liu, Tianxiang Xu et al.

Multi-view multi-label learning frequently suffers from simultaneous feature absence and incomplete annotations, due to challenges in data acquisition and cost-intensive supervision. To tackle the complex yet highly practical problem while overcoming the existing limitations of feature recovery, representation disentanglement, and label semantics modeling, we propose an Adaptive Disentangled Representation Learning method (ADRL). ADRL achieves robust view completion by propagating feature-level affinity across modalities with neighborhood awareness, and reinforces reconstruction effectiveness by leveraging a stochastic masking strategy. Through disseminating category-level association across label distributions, ADRL refines distribution parameters for capturing interdependent label prototypes. Besides, we formulate a mutual-information-based objective to promote consistency among shared representations and suppress information overlap between view-specific representation and other modalities. Theoretically, we derive the tractable bounds to train the dual-channel network. Moreover, ADRL performs prototype-specific feature selection by enabling independent interactions between label embeddings and view representations, accompanied by the generation of pseudo-labels for each category. The structural characteristics of the pseudo-label space are then exploited to guide a discriminative trade-off during view fusion. Finally, extensive experiments on public datasets and real-world applications demonstrate the superior performance of ADRL.

Enhao Huang, Zhiyu Zhang, Tianxiang Xu et al.

Complex-valued signals encode both amplitude and phase, yet most deep models treat attention as real-valued correlation, overlooking interference effects. We introduce the Holographic Transformer, a physics-inspired architecture that incorporates wave interference principles into self-attention. Holographic attention modulates interactions by relative phase and coherently superimposes values, ensuring consistency between amplitude and phase. A dual-headed decoder simultaneously reconstructs the input and predicts task outputs, preventing phase collapse when losses prioritize magnitude over phase. We demonstrate that holographic attention implements a discrete interference operator and maintains phase consistency under linear mixing. Experiments on PolSAR image classification and wireless channel prediction show strong performance, achieving high classification accuracy and F1 scores, low regression error, and increased robustness to phase perturbations. These results highlight that enforcing physical consistency in attention leads to generalizable improvements in complex-valued learning and provides a unified, physics-based framework for coherent signal modeling. The code is available at https://github.com/EonHao/Holographic-Transformers.

Enhao Huang, Pengyu Sun, Zixin Lin et al.

Large Language Models (LLMs) have achieved impressive performance in diverse natural language processing tasks, but specialized domains such as Web3 present new challenges and require more tailored evaluation. Despite the significant user base and capital flows in Web3, encompassing smart contracts, decentralized finance (DeFi), non-fungible tokens (NFTs), decentralized autonomous organizations (DAOs), on-chain governance, and novel token-economics, no comprehensive benchmark has systematically assessed LLM performance in this domain. To address this gap, we introduce the DMind Benchmark, a holistic Web3-oriented evaluation suite covering nine critical subfields: fundamental blockchain concepts, blockchain infrastructure, smart contract, DeFi mechanisms, DAOs, NFTs, token economics, meme concept, and security vulnerabilities. Beyond multiple-choice questions, DMind Benchmark features domain-specific tasks such as contract debugging and on-chain numeric reasoning, mirroring real-world scenarios. We evaluated 26 models, including ChatGPT, Claude, DeepSeek, Gemini, Grok, and Qwen, uncovering notable performance gaps in specialized areas like token economics and security-critical contract analysis. While some models excel in blockchain infrastructure tasks, advanced subfields remain challenging. Our benchmark dataset and evaluation pipeline are open-sourced on https://huggingface.co/datasets/DMindAI/DMind_Benchmark, reaching number one in Hugging Face's trending dataset charts within a week of release.

Qiang Yi, Yangfan He, Jianhui Wang et al.

Large Language Models (LLMs) can generate creative and engaging narratives from user-specified input, but maintaining coherence and emotional depth throughout these AI-generated stories remains a challenge. In this work, we propose SCORE, a framework for Story Coherence and Retrieval Enhancement, designed to detect and resolve narrative inconsistencies. By tracking key item statuses and generating episode summaries, SCORE uses a Retrieval-Augmented Generation (RAG) approach to identify related episodes and enhance the overall story structure. Experimental results from testing multiple LLM-generated stories demonstrate that SCORE significantly improves the consistency and stability of narrative coherence compared to baseline GPT models, providing a more robust method for evaluating and refining AI-generated narratives.

Rong Fu, Yemin Wang, Tianxiang Xu et al.

We present S-Path-RAG, a semantic-aware shortest-path Retrieval-Augmented Generation framework designed to improve multi-hop question answering over large knowledge graphs. S-Path-RAG departs from one-shot, text-heavy retrieval by enumerating bounded-length, semantically weighted candidate paths using a hybrid weighted $k$-shortest, beam, and constrained random-walk strategy, learning a differentiable path scorer together with a contrastive path encoder and lightweight verifier, and injecting a compact soft mixture of selected path latents into a language model via cross-attention. The system runs inside an iterative Neural-Socratic Graph Dialogue loop in which concise diagnostic messages produced by the language model are mapped to targeted graph edits or seed expansions, enabling adaptive retrieval when the model expresses uncertainty. This combination yields a retrieval mechanism that is both token-efficient and topology-aware while preserving interpretable path-level traces for diagnostics and intervention. We validate S-Path-RAG on standard multi-hop KGQA benchmarks and through ablations and diagnostic analyses. The results demonstrate consistent improvements in answer accuracy, evidence coverage, and end-to-end efficiency compared to strong graph- and LLM-based baselines. We further analyze trade-offs between semantic weighting, verifier filtering, and iterative updates, and report practical recommendations for deployment under constrained compute and token budgets.

Yangfan He, Jianhui Wang, Yijin Wang et al.

Current image generation systems produce high-quality images but struggle with ambiguous user prompts, making interpretation of actual user intentions difficult. Many users must modify their prompts several times to ensure the generated images meet their expectations. While some methods focus on enhancing prompts to make the generated images fit user needs, the model is still hard to understand users' real needs, especially for non-expert users. In this research, we aim to enhance the visual parameter-tuning process, making the model user-friendly for individuals without specialized knowledge and better understand user needs. We propose a human-machine co-adaption strategy using mutual information between the user's prompts and the pictures under modification as the optimizing target to make the system better adapt to user needs. We find that an improved model can reduce the necessity for multiple rounds of adjustments. We also collect multi-round dialogue datasets with prompts and images pairs and user intent. Various experiments demonstrate the effectiveness of the proposed method in our proposed dataset. Our dataset and annotation tools will be available.

Haixu Liu, Yufei Wang, Tianxiang Xu et al.

Large-scale, cross-species plant distribution prediction plays a crucial role in biodiversity conservation, yet modeling efforts in this area still face significant challenges due to the sparsity and bias of observational data. Presence-Absence (PA) data provide accurate and noise-free labels, but are costly to obtain and limited in quantity; Presence-Only (PO) data, by contrast, offer broad spatial coverage and rich spatiotemporal distribution, but suffer from severe label noise in negative samples. To address these real-world constraints, this paper proposes a multimodal fusion framework that fully leverages the strengths of both PA and PO data. We introduce an innovative pseudo-label aggregation strategy for PO data based on the geographic coverage of satellite imagery, enabling geographic alignment between the label space and remote sensing feature space. In terms of model architecture, we adopt Swin Transformer Base as the backbone for satellite imagery, utilize the TabM network for tabular feature extraction, retain the Temporal Swin Transformer for time-series modeling, and employ a stackable serial tri-modal cross-attention mechanism to optimize the fusion of heterogeneous modalities. Furthermore, empirical analysis reveals significant geographic distribution shifts between PA training and test samples, and models trained by directly mixing PO and PA data tend to experience performance degradation due to label noise in PO data. To address this, we draw on the mixture-of-experts paradigm: test samples are partitioned according to their spatial proximity to PA samples, and different models trained on distinct datasets are used for inference and post-processing within each partition. Experiments on the GeoLifeCLEF 2025 dataset demonstrate that our approach achieves superior predictive performance in scenarios with limited PA coverage and pronounced distribution shifts.

Xiaojun Xue, Chunxia Zhang, Tianxiang Xu et al.

Few-shot named entity recognition (NER) aims to recognize novel named entities in low-resource domains utilizing existing knowledge. However, the present few-shot NER models assume that the labeled data are all clean without noise or outliers, and there are few works focusing on the robustness of the cross-domain transfer learning ability to textual adversarial attacks in Few-shot NER. In this work, we comprehensively explore and assess the robustness of few-shot NER models under textual adversarial attack scenario, and found the vulnerability of existing few-shot NER models. Furthermore, we propose a robust two-stage few-shot NER method with Boundary Discrimination and Correlation Purification (BDCP). Specifically, in the span detection stage, the entity boundary discriminative module is introduced to provide a highly distinguishing boundary representation space to detect entity spans. In the entity typing stage, the correlations between entities and contexts are purified by minimizing the interference information and facilitating correlation generalization to alleviate the perturbations caused by textual adversarial attacks. In addition, we construct adversarial examples for few-shot NER based on public datasets Few-NERD and Cross-Dataset. Comprehensive evaluations on those two groups of few-shot NER datasets containing adversarial examples demonstrate the robustness and superiority of the proposed method.

Tianxiang Xu, Zhichao Wen, Xinyu Zhao et al.

The increasing integration of Industrial IoT (IIoT) exposes critical cyber-physical systems to sophisticated, multi-stage attacks that elude traditional defenses lacking contextual awareness. This paper introduces L2M-AID, a novel framework for Autonomous Industrial Defense using LLM-empowered, Multi-agent reinforcement learning. L2M-AID orchestrates a team of collaborative agents, each driven by a Large Language Model (LLM), to achieve adaptive and resilient security. The core innovation lies in the deep fusion of two AI paradigms: we leverage an LLM as a semantic bridge to translate vast, unstructured telemetry into a rich, contextual state representation, enabling agents to reason about adversary intent rather than merely matching patterns. This semantically-aware state empowers a Multi-Agent Reinforcement Learning (MARL) algorithm, MAPPO, to learn complex cooperative strategies. The MARL reward function is uniquely engineered to balance security objectives (threat neutralization) with operational imperatives, explicitly penalizing actions that disrupt physical process stability. To validate our approach, we conduct extensive experiments on the benchmark SWaT dataset and a novel synthetic dataset generated based on the MITRE ATT&CK for ICS framework. Results demonstrate that L2M-AID significantly outperforms traditional IDS, deep learning anomaly detectors, and single-agent RL baselines across key metrics, achieving a 97.2% detection rate while reducing false positives by over 80% and improving response times by a factor of four. Crucially, it demonstrates superior performance in maintaining physical process stability, presenting a robust new paradigm for securing critical national infrastructure.

Shengkai Xu, Hsiang Lun Kao, Tianxiang Xu et al.

Polyp detectors trained on clean datasets often underperform in real-world endoscopy, where illumination changes, motion blur, and occlusions degrade image quality. Existing approaches struggle with the domain gap between controlled laboratory conditions and clinical practice, where adverse imaging conditions are prevalent. In this work, we propose AdaptiveDetector, a novel two-stage detector-verifier framework comprising a YOLOv11 detector with a vision-language model (VLM) verifier. The detector adaptively adjusts per-frame confidence thresholds under VLM guidance, while the verifier is fine-tuned with Group Relative Policy Optimization (GRPO) using an asymmetric, cost-sensitive reward function specifically designed to discourage missed detections -- a critical clinical requirement. To enable realistic assessment under challenging conditions, we construct a comprehensive synthetic testbed by systematically degrading clean datasets with adverse conditions commonly encountered in clinical practice, providing a rigorous benchmark for zero-shot evaluation. Extensive zero-shot evaluation on synthetically degraded CVC-ClinicDB and Kvasir-SEG images demonstrates that our approach improves recall by 14 to 22 percentage points over YOLO alone, while precision remains within 0.7 points below to 1.7 points above the baseline. This combination of adaptive thresholding and cost-sensitive reinforcement learning achieves clinically aligned, open-world polyp detection with substantially fewer false negatives, thereby reducing the risk of missed precancerous polyps and improving patient outcomes.

Yi Zhang, Tianxiang Xu, Zijian Li et al.

Large language models (LLMs) exhibit exceptional performance but pose substantial privacy risks due to training data memorization, particularly within healthcare contexts involving imperfect or privacy-sensitive patient information. We present a hierarchical dual-strategy framework for selective knowledge unlearning that precisely removes specialized knowledge while preserving fundamental medical competencies. Our approach synergistically integrates geometric-constrained gradient updates to selectively modulate target parameters with concept-aware token-level interventions that distinguish between preservation-critical and unlearning-targeted tokens via a unified four-level medical concept hierarchy. Comprehensive evaluations on the MedMCQA (surgical) and MHQA (anxiety, depression, trauma) datasets demonstrate superior performance, achieving an 82.7% forgetting rate and 88.5% knowledge preservation. Notably, our framework maintains robust privacy guarantees while requiring modification of only 0.1% of parameters, addressing critical needs for regulatory compliance, auditability, and ethical standards in clinical research.

Tianxiang Xu, Zhichao Wen, Xinyu Zhao et al.

The escalating complexity of network threats and the inherent class imbalance in traffic data present formidable challenges for modern Intrusion Detection Systems (IDS). While Graph Neural Networks (GNNs) excel in modeling topological structures and Temporal Convolutional Networks (TCNs) are proficient in capturing time-series dependencies, a framework that synergistically integrates both while explicitly addressing data imbalance remains an open challenge. This paper introduces a novel deep learning framework, named Gated Temporal Convolutional Network and Graph (GTCN-G), engineered to overcome these limitations. Our model uniquely fuses a Gated TCN (G-TCN) for extracting hierarchical temporal features from network flows with a Graph Convolutional Network (GCN) designed to learn from the underlying graph structure. The core innovation lies in the integration of a residual learning mechanism, implemented via a Graph Attention Network (GAT). This mechanism preserves original feature information through residual connections, which is critical for mitigating the class imbalance problem and enhancing detection sensitivity for rare malicious activities (minority classes). We conducted extensive experiments on two public benchmark datasets, UNSW-NB15 and ToN-IoT, to validate our approach. The empirical results demonstrate that the proposed GTCN-G model achieves state-of-the-art performance, significantly outperforming existing baseline models in both binary and multi-class classification tasks.