Menglu Li

Eleonora Achiluzzi, Menglu Li, Md Fahd Al Georgy et al.

The Internet of Things (IoT) is a system that connects physical computing devices, sensors, software, and other technologies. Data can be collected, transferred, and exchanged with other devices over the network without requiring human interactions. One challenge the development of IoT faces is the existence of anomaly data in the network. Therefore, research on anomaly detection in the IoT environment has become popular and necessary in recent years. This survey provides an overview to understand the current progress of the different anomaly detection algorithms and how they can be applied in the context of the Internet of Things. In this survey, we categorize the widely used anomaly detection machine learning and deep learning techniques in IoT into three types: clustering-based, classification-based, and deep learning based. For each category, we introduce some state-of-the-art anomaly detection methods and evaluate the advantages and limitations of each technique.

Zhengyi Li, Menglu Li, Lida Zhu et al.

Protein post-translational modification (PTM) site prediction is a fundamental task in bioinformatics. Several computational methods have been developed to predict PTM sites. However, existing methods ignore the structure information and merely utilize protein sequences. Furthermore, designing a more fine-grained structure representation learning method is urgently needed as PTM is a biological event that occurs at the atom granularity. In this paper, we propose a PTM site prediction method by Coupling of Multi-Granularity structure and Multi-Scale sequence representation, PTM-CMGMS for brevity. Specifically, multigranularity structure-aware representation learning is designed to learn neighborhood structure representations at the amino acid, atom, and whole protein granularity from AlphaFold predicted structures, followed by utilizing contrastive learning to optimize the structure representations.Additionally, multi-scale sequence representation learning is used to extract context sequence information, and motif generated by aligning all context sequences of PTM sites assists the prediction. Extensive experiments on three datasets show that PTM-CMGMS outperforms the state-of-the-art methods.

Yang Lu, Mengying Wang, Menglu Li et al.

The motivation for this paper is to apply Bayesian structure learning using Model Averaging in large-scale networks. Currently, Bayesian model averaging algorithm is applicable to networks with only tens of variables, restrained by its super-exponential complexity. We present a novel framework, called LSBN(Large-Scale Bayesian Network), making it possible to handle networks with infinite size by following the principle of divide-and-conquer. The method of LSBN comprises three steps. In general, LSBN first performs the partition by using a second-order partition strategy, which achieves more robust results. LSBN conducts sampling and structure learning within each overlapping community after the community is isolated from other variables by Markov Blanket. Finally LSBN employs an efficient algorithm, to merge structures of overlapping communities into a whole. In comparison with other four state-of-art large-scale network structure learning algorithms such as ARACNE, PC, Greedy Search and MMHC, LSBN shows comparable results in five common benchmark datasets, evaluated by precision, recall and f-score. What's more, LSBN makes it possible to learn large-scale Bayesian structure by Model Averaging which used to be intractable. In summary, LSBN provides an scalable and parallel framework for the reconstruction of network structures. Besides, the complete information of overlapping communities serves as the byproduct, which could be used to mine meaningful clusters in biological networks, such as protein-protein-interaction network or gene regulatory network, as well as in social network.