Dejan Štepec

Dejan Štepec, Maja Jerše, Snežana Đokić et al.

We present Patherea, a unified framework for point-based cell detection and classification that enables the development and fair evaluation of state-of-the-art methods. To support this, we introduce a large-scale dataset that replicates the clinical workflow for Ki-67 proliferation index estimation. Our method directly predicts cell locations and classes without relying on intermediate representations. It incorporates a hybrid Hungarian matching strategy for accurate point assignment and supports flexible backbones and training regimes, including recent pathology foundation models. Patherea achieves state-of-the-art performance on public datasets - Lizard, BRCA-M2C, and BCData - while highlighting performance saturation on these benchmarks. In contrast, our newly proposed Patherea dataset presents a significantly more challenging benchmark. Additionally, we identify and correct common errors in current evaluation protocols and provide an updated benchmarking utility for standardized assessment. The Patherea dataset and code are publicly available to facilitate further research and fair comparisons.

Álvaro García Faura, Dejan Štepec, Tomaž Martinčič et al.

A key component towards an improved and fast cancer diagnosis is the development of computer-assisted tools. In this article, we present the solution that won the SegPC-2021 competition for the segmentation of multiple myeloma plasma cells in microscopy images. The labels used in the competition dataset were generated semi-automatically and presented noise. To deal with it, a heavy image augmentation procedure was carried out and predictions from several models were combined using a custom ensemble strategy. State-of-the-art feature extractors and instance segmentation architectures were used, resulting in a mean Intersection-over-Union of 0.9389 on the SegPC-2021 final test set.

Tomaz Martincic, Dejan Stepec, Joao Pita Costa et al.

Automatic Identification System (AIS) data represents a rich source of information about maritime traffic and offers a great potential for data analytics and predictive modeling solutions, which can help optimizing logistic chains and to reduce environmental impacts. In this work, we address the main limitations of the validity of AIS navigational data fields, by proposing a machine learning-based data-driven methodology to detect and (to the possible extent) also correct erroneous data. Additionally, we propose a metric that can be used by vessel operators and ports to express numerically their business and environmental efficiency through time and spatial dimensions, enabled with the obtained validated AIS data. We also demonstrate Port Area Vessel Movements (PARES) tool, which demonstrates the proposed solutions.

Dejan Stepec, Tomaz Martincic, Danijel Skocaj

In this paper, we present a ship detection pipeline for low-cost medium resolution satellite optical imagery obtained from ESA Sentinel-2 and Planet Labs Dove constellations. This optical satellite imagery is readily available for any place on Earth and underutilized in the maritime domain, compared to existing solutions based on synthetic-aperture radar (SAR) imagery. We developed a ship detection method based on a state-of-the-art deep-learning-based object detection method which was developed and evaluated on a large-scale dataset that was collected and automatically annotated with the help of Automatic Identification System (AIS) data.

Dejan Stepec, Danijel Skocaj

Detection of visual anomalies refers to the problem of finding patterns in different imaging data that do not conform to the expected visual appearance and is a widely studied problem in different domains. Due to the nature of anomaly occurrences and underlying generating processes, it is hard to characterize them and obtain labeled data. Obtaining labeled data is especially difficult in biomedical applications, where only trained domain experts can provide labels, which often come in large diversity and complexity. Recently presented approaches for unsupervised detection of visual anomalies approaches omit the need for labeled data and demonstrate promising results in domains, where anomalous samples significantly deviate from the normal appearance. Despite promising results, the performance of such approaches still lags behind supervised approaches and does not provide a one-fits-all solution. In this work, we present an image-to-image translation-based framework that significantly surpasses the performance of existing unsupervised methods and approaches the performance of supervised methods in a challenging domain of cancerous region detection in histology imagery.

Žiga Emeršič, Dejan Štepec, Vitomir Štruc et al.

Identity recognition from ear images is an active field of research within the biometric community. The ability to capture ear images from a distance and in a covert manner makes ear recognition technology an appealing choice for surveillance and security applications as well as related application domains. In contrast to other biometric modalities, where large datasets captured in uncontrolled settings are readily available, datasets of ear images are still limited in size and mostly of laboratory-like quality. As a consequence, ear recognition technology has not benefited yet from advances in deep learning and convolutional neural networks (CNNs) and is still lacking behind other modalities that experienced significant performance gains owing to deep recognition technology. In this paper we address this problem and aim at building a CNNbased ear recognition model. We explore different strategies towards model training with limited amounts of training data and show that by selecting an appropriate model architecture, using aggressive data augmentation and selective learning on existing (pre-trained) models, we are able to learn an effective CNN-based model using a little more than 1300 training images. The result of our work is the first CNN-based approach to ear recognition that is also made publicly available to the research community. With our model we are able to improve on the rank one recognition rate of the previous state-of-the-art by more than 25% on a challenging dataset of ear images captured from the web (a.k.a. in the wild).

Žiga Emeršič, Dejan Štepec, Vitomir Štruc et al.

In this paper we present the results of the Unconstrained Ear Recognition Challenge (UERC), a group benchmarking effort centered around the problem of person recognition from ear images captured in uncontrolled conditions. The goal of the challenge was to assess the performance of existing ear recognition techniques on a challenging large-scale dataset and identify open problems that need to be addressed in the future. Five groups from three continents participated in the challenge and contributed six ear recognition techniques for the evaluation, while multiple baselines were made available for the challenge by the UERC organizers. A comprehensive analysis was conducted with all participating approaches addressing essential research questions pertaining to the sensitivity of the technology to head rotation, flipping, gallery size, large-scale recognition and others. The top performer of the UERC was found to ensure robust performance on a smaller part of the dataset (with 180 subjects) regardless of image characteristics, but still exhibited a significant performance drop when the entire dataset comprising 3,704 subjects was used for testing.