Christophe Biernacki

Violaine Courrier, Christophe Biernacki, Cristian Preda et al.

In healthcare, patient data is often collected as multivariate time series, providing a comprehensive view of a patient's health status over time. While this data can be sparse, connected devices may enhance its frequency. The goal is to create patient profiles from these time series. In the absence of labels, a predictive model can be used to predict future values while forming a latent cluster space, evaluated based on predictive performance. We compare two models on Withing's datasets, M AGMAC LUST which clusters entire time series and DGM${}^2$ which allows the group affiliation of an individual to change over time (dynamic clustering).

Guillaume Braun, Hemant Tyagi, Christophe Biernacki

Real-world networks often come with side information that can help to improve the performance of network analysis tasks such as clustering. Despite a large number of empirical and theoretical studies conducted on network clustering methods during the past decade, the added value of side information and the methods used to incorporate it optimally in clustering algorithms are relatively less understood. We propose a new iterative algorithm to cluster networks with side information for nodes (in the form of covariates) and show that our algorithm is optimal under the Contextual Symmetric Stochastic Block Model. Our algorithm can be applied to general Contextual Stochastic Block Models and avoids hyperparameter tuning in contrast to previously proposed methods. We confirm our theoretical results on synthetic data experiments where our algorithm significantly outperforms other methods, and show that it can also be applied to signed graphs. Finally we demonstrate the practical interest of our method on real data.

Aude Sportisse, Matthieu Marbac, Fabien Laporte et al.

Model-based unsupervised learning, as any learning task, stalls as soon as missing data occurs. This is even more true when the missing data are informative, or said missing not at random (MNAR). In this paper, we propose model-based clustering algorithms designed to handle very general types of missing data, including MNAR data. To do so, we introduce a mixture model for different types of data (continuous, count, categorical and mixed) to jointly model the data distribution and the MNAR mechanism, remaining vigilant to the relative degrees of freedom of each. Several MNAR models are discussed, for which the cause of the missingness can depend on both the values of the missing variable themselves and on the class membership. However, we focus on a specific MNAR model, called MNARz, for which the missingness only depends on the class membership. We first underline its ease of estimation, by showing that the statistical inference can be carried out on the data matrix concatenated with the missing mask considering finally a standard MAR mechanism. Consequently, we propose to perform clustering using the Expectation Maximization algorithm, specially developed for this simplified reinterpretation. Finally, we assess the numerical performances of the proposed methods on synthetic data and on the real medical registry TraumaBase as well.

Guillaume Braun, Hemant Tyagi, Christophe Biernacki

Relationship between agents can be conveniently represented by graphs. When these relationships have different modalities, they are better modelled by multilayer graphs where each layer is associated with one modality. Such graphs arise naturally in many contexts including biological and social networks. Clustering is a fundamental problem in network analysis where the goal is to regroup nodes with similar connectivity profiles. In the past decade, various clustering methods have been extended from the unilayer setting to multilayer graphs in order to incorporate the information provided by each layer. While most existing works assume - rather restrictively - that all layers share the same set of nodes, we propose a new framework that allows for layers to be defined on different sets of nodes. In particular, the nodes not recorded in a layer are treated as missing. Within this paradigm, we investigate several generalizations of well-known clustering methods in the complete setting to the incomplete one and prove some consistency results under the Multi-Layer Stochastic Block Model assumption. Our theoretical results are complemented by thorough numerical comparisons between our proposed algorithms on synthetic data, and also on real datasets, thus highlighting the promising behaviour of our methods in various settings.