Keqi Wang

Wei Xie, Keqi Wang, Hua Zheng et al.

Driven by the critical needs of biomanufacturing 4.0, we introduce a probabilistic knowledge graph hybrid model characterizing the risk- and science-based understanding of bioprocess mechanisms. It can faithfully capture the important properties, including nonlinear reactions, partially observed state, and nonstationary dynamics. Given very limited real process observations, we derive a posterior distribution quantifying model estimation uncertainty. To avoid the evaluation of intractable likelihoods, Approximate Bayesian Computation sampling with Sequential Monte Carlo (ABC-SMC) is utilized to approximate the posterior distribution. Under high stochastic and model uncertainties, it is computationally expensive to match output trajectories. Therefore, we create a linear Gaussian dynamic Bayesian network (LG-DBN) auxiliary likelihood-based ABC-SMC approach. Through matching the summary statistics driven through LG-DBN likelihood that can capture critical interactions and variations, the proposed algorithm can accelerate hybrid model inference, support process monitoring, and facilitate mechanism learning and robust control.

Yi Xin, Qi Qin, Siqi Luo et al.

We introduce Lumina-DiMOO, an open-source foundational model for seamless multi-modal generation and understanding. Lumina-DiMOO sets itself apart from prior unified models by utilizing a fully discrete diffusion modeling to handle inputs and outputs across various modalities. This innovative approach allows Lumina-DiMOO to achieve higher sampling efficiency compared to previous autoregressive (AR) or hybrid AR-Diffusion paradigms and adeptly support a broad spectrum of multi-modal tasks, including text-to-image generation, image-to-image generation (e.g., image editing, subject-driven generation, and image inpainting, etc.), as well as image understanding. Lumina-DiMOO achieves state-of-the-art performance on multiple benchmarks, surpassing existing open-source unified multi-modal models. To foster further advancements in multi-modal and discrete diffusion model research, we release our code and checkpoints to the community. Project Page: https://synbol.github.io/Lumina-DiMOO.

Keqi Wang, Ziteng Cui, Jieru Jia et al.

Convolution neural networks (CNNs) based methods have dominated the low-light image enhancement tasks due to their outstanding performance. However, the convolution operation is based on a local sliding window mechanism, which is difficult to construct the long-range dependencies of the feature maps. Meanwhile, the self-attention based global relationship aggregation methods have been widely used in computer vision, but these methods are difficult to handle high-resolution images because of the high computational complexity. To solve this problem, this paper proposes a Linear Array Self-attention (LASA) mechanism, which uses only two 2-D feature encodings to construct 3-D global weights and then refines feature maps generated by convolution layers. Based on LASA, Linear Array Network (LAN) is proposed, which is superior to the existing state-of-the-art (SOTA) methods in both RGB and RAW based low-light enhancement tasks with a smaller amount of parameters. The code is released in https://github.com/cuiziteng/LASA_enhancement.

Yuming Zeng, Wei Xie, Keqi Wang

Stochastic reaction networks governed by Chemical Langevin Equations (CLE) exhibit pronounced multiscale dynamics spanning fast molecular reactions, intermediate transport, and slow cellular regulation, posing significant challenges for efficient and accurate simulation. Although operator splitting naturally decouples fast and slow subsystems, a rigorous error characterization for CLE splitting schemes has been lacking. We propose a modular operator-splitting framework with adaptive discretization that enables reliable and efficient simulation across fast-slow dynamics with explicit control of discretization error. Using stochastic logarithmic representations, we present a complete error analysis of the fast-slow Lie-Trotter splitting method, decomposing the one-step error into stochastic flow truncation error, commutator errors due to subsystem noncommutativity, and numerical discretization errors from fast and slow integrations. Guided by this analysis, we develop a proportional-integral (PI) adaptive controller that jointly selects macro time steps and fast microsteps, achieving substantial efficiency gains while maintaining accuracy.

Keilung Choy, Wei Xie, Keqi Wang

Bioprocess mechanistic modeling is essential for advancing intelligent digital twin representation of biomanufacturing, yet challenges persist due to complex intracellular regulation, stochastic system behavior, and limited experimental data. This paper introduces a symbolic and statistical learning framework to identify key regulatory mechanisms and quantify model uncertainty. Bioprocess dynamics is formulated with stochastic differential equations characterizing intrinsic process variability, with a predefined set of candidate regulatory mechanisms constructed from biological knowledge. A Bayesian learning approach is developed, which is based on a joint learning of kinetic parameters and regulatory structure through a formulation of the mixture model. To enhance computational efficiency, a Metropolis-adjusted Langevin algorithm with adjoint sensitivity analysis is developed for posterior exploration. Compared to state-of-the-art Bayesian inference approaches, the proposed framework achieves improved sample efficiency and robust model selection. An empirical study demonstrates its ability to recover missing regulatory mechanisms and improve model fidelity under data-limited conditions.

Hua Zheng, Wei Xie, Keqi Wang et al.

Driven by the key challenges of cell therapy manufacturing, including high complexity, high uncertainty, and very limited process observations, we propose a hybrid model-based reinforcement learning (RL) to efficiently guide process control. We first create a probabilistic knowledge graph (KG) hybrid model characterizing the risk- and science-based understanding of biomanufacturing process mechanisms and quantifying inherent stochasticity, e.g., batch-to-batch variation. It can capture the key features, including nonlinear reactions, nonstationary dynamics, and partially observed state. This hybrid model can leverage existing mechanistic models and facilitate learning from heterogeneous process data. A computational sampling approach is used to generate posterior samples quantifying model uncertainty. Then, we introduce hybrid model-based Bayesian RL, accounting for both inherent stochasticity and model uncertainty, to guide optimal, robust, and interpretable dynamic decision making. Cell therapy manufacturing examples are used to empirically demonstrate that the proposed framework can outperform the classical deterministic mechanistic model assisted process optimization.

Keqi Wang, Wei Xie, Wencen Wu et al.

After being legalized as an agricultural commodity by the 2018 U.S. Farm Bill, the Industrial Hemp production is moved from limited pilot programs to a regulated agriculture production system, and the market keeps increasing since then. However, Industrial Hemp Supply Chain (IHSC) faces several critical challenges, including high complexity and variability, data tampering, and lack of immutable information tracking system. In this paper, we develop a blockchain enabled internet-of-things (IoT) platform for IHSC to support process tracking, scalability, interoperability, and risk management. Basically, we create a two-layer blockchain with proof-of-authority based smart contract, which can leverage local authorities with state/federal regulators to ensure and accelerate quality control verification and regulatory compliance. Then, we develop a user-friendly mobile app so that each participant can use smart phone to real-time collect and upload their data to the cloud, and further share the process verification and tracking information through the blockchain network. Our study indicates the proposed platform can support interoperability, improve the efficiency of quality control verification, and ensure the safety of regulated IHSC.

Keqi Wang, Wei Xie, Wencen Wu et al.

With the passage of the 2018 U.S. Farm Bill, Industrial Hemp production is moved from limited pilot programs to a regulated agriculture production system. However, Industrial Hemp Supply Chain (IHSC) faces critical challenges, including: high complexity and variability, very limited production knowledge, lack of data and information tracking. In this paper, we propose blockchain-enabled IHSC and develop a preliminary simulation-based digital twin for this distributed cyber-physical system (CPS) to support the process learning and risk management. Basically, we develop a two-layer blockchain with proof of authority smart contract, which can track the data and key information, improve the supply chain transparency, and leverage local authorities and state regulators to ensure the quality control verification. Then, we introduce a stochastic simulation-based digital twin for IHSC risk management, which can characterize the process spatial-temporal causal interdependencies and dynamic evolution to guide risk control and decision making. Our empirical study demonstrates the promising performance of proposed platform.

Keqi Wang, Peng Gao, Steven Hoi et al.

Low-light imaging is challenging since images may appear to be dark and noised due to low signal-to-noise ratio, complex image content, and the variety in shooting scenes in extreme low-light condition. Many methods have been proposed to enhance the imaging quality under extreme low-light conditions, but it remains difficult to obtain satisfactory results, especially when they attempt to retain high dynamic range (HDR). In this paper, we propose a novel method of multi-granulation cooperative networks (MCN) with bidirectional information flow to enhance extreme low-light images, and design an illumination map estimation function (IMEF) to preserve high dynamic range (HDR). To facilitate this research, we also contribute to create a new benchmark dataset of real-world Dark High Dynamic Range (DHDR) images to evaluate the performance of high dynamic preservation in low light environment. Experimental results show that the proposed method outperforms the state-of-the-art approaches in terms of both visual effects and quantitative analysis.