Gagandeep Singh

LG
h-index28
85papers
1,018citations
Novelty58%
AI Score60

85 Papers

CLNov 5, 2025
UTF-8 Plumbing: Byte-level Tokenizers Unavoidably Enable LLMs to Generate Ill-formed UTF-8

Preston Firestone, Shubham Ugare, Gagandeep Singh et al.

Subword tokenization segments input text according to a pre-defined vocabulary to feed it into a language model; the language model, in turn, generates a sequence made from this same vocabulary. The members of the vocabulary can be built of code points or bytes. Using code points means that all members of the vocabulary are valid UTF-8 characters. However, it also requires thousands of initial members to achieve acceptable coverage of inputs. Beginning with bytes, on the contrary, avoids out-of-vocabulary errors with only 256 initial members of the vocabulary, but the members of the vocabulary and sequences of them are not guaranteed to be valid UTF-8. Sequences that are not valid UTF-8 break code that assumes its input to be valid UTF-8. Applications of language models must account for the breakage thereby introduced. In this paper, we formalize tokenization using monoid theory and prove that tokenizers whose vocabularies contain tokens that are ill-formed UTF-8 can always produce sequences that are ill-formed UTF-8. We demonstrate formally that attempting to incrementally convert tokens back to a string and interpret the results as UTF-8 gives different results than converting the whole sequence of tokens at once. This formal result predicts real-world bugs: we evaluate mitigations for the problem identified and provide case studies of major foundation models, serving engines, and constrained generation systems.

GNDec 9, 2022Code
TargetCall: Eliminating the Wasted Computation in Basecalling via Pre-Basecalling Filtering

Meryem Banu Cavlak, Gagandeep Singh, Mohammed Alser et al.

Basecalling is an essential step in nanopore sequencing analysis where the raw signals of nanopore sequencers are converted into nucleotide sequences, i.e., reads. State-of-the-art basecallers employ complex deep learning models to achieve high basecalling accuracy. This makes basecalling computationally inefficient and memory-hungry, bottlenecking the entire genome analysis pipeline. However, for many applications, the majority of reads do no match the reference genome of interest (i.e., target reference) and thus are discarded in later steps in the genomics pipeline, wasting the basecalling computation. To overcome this issue, we propose TargetCall, the first pre-basecalling filter to eliminate the wasted computation in basecalling. TargetCall's key idea is to discard reads that will not match the target reference (i.e., off-target reads) prior to basecalling. TargetCall consists of two main components: (1) LightCall, a lightweight neural network basecaller that produces noisy reads; and (2) Similarity Check, which labels each of these noisy reads as on-target or off-target by matching them to the target reference. Our thorough experimental evaluations show that TargetCall 1) improves the end-to-end basecalling runtime performance of the state-of-the-art basecaller by 3.31x while maintaining high (98.88%) recall in keeping on-target reads, 2) maintains high accuracy in downstream analysis, and 3) achieves better runtime performance, throughput, recall, precision, and generality compared to prior works. TargetCall is available at https://github.com/CMU-SAFARI/TargetCall.

LGSep 26, 2023Code
FedCompass: Efficient Cross-Silo Federated Learning on Heterogeneous Client Devices using a Computing Power Aware Scheduler

Zilinghan Li, Pranshu Chaturvedi, Shilan He et al.

Cross-silo federated learning offers a promising solution to collaboratively train robust and generalized AI models without compromising the privacy of local datasets, e.g., healthcare, financial, as well as scientific projects that lack a centralized data facility. Nonetheless, because of the disparity of computing resources among different clients (i.e., device heterogeneity), synchronous federated learning algorithms suffer from degraded efficiency when waiting for straggler clients. Similarly, asynchronous federated learning algorithms experience degradation in the convergence rate and final model accuracy on non-identically and independently distributed (non-IID) heterogeneous datasets due to stale local models and client drift. To address these limitations in cross-silo federated learning with heterogeneous clients and data, we propose FedCompass, an innovative semi-asynchronous federated learning algorithm with a computing power-aware scheduler on the server side, which adaptively assigns varying amounts of training tasks to different clients using the knowledge of the computing power of individual clients. FedCompass ensures that multiple locally trained models from clients are received almost simultaneously as a group for aggregation, effectively reducing the staleness of local models. At the same time, the overall training process remains asynchronous, eliminating prolonged waiting periods from straggler clients. Using diverse non-IID heterogeneous distributed datasets, we demonstrate that FedCompass achieves faster convergence and higher accuracy than other asynchronous algorithms while remaining more efficient than synchronous algorithms when performing federated learning on heterogeneous clients. The source code for FedCompass is available at https://github.com/APPFL/FedCompass.

CVJul 20, 2022Code
Learning Topological Interactions for Multi-Class Medical Image Segmentation

Saumya Gupta, Xiaoling Hu, James Kaan et al.

Deep learning methods have achieved impressive performance for multi-class medical image segmentation. However, they are limited in their ability to encode topological interactions among different classes (e.g., containment and exclusion). These constraints naturally arise in biomedical images and can be crucial in improving segmentation quality. In this paper, we introduce a novel topological interaction module to encode the topological interactions into a deep neural network. The implementation is completely convolution-based and thus can be very efficient. This empowers us to incorporate the constraints into end-to-end training and enrich the feature representation of neural networks. The efficacy of the proposed method is validated on different types of interactions. We also demonstrate the generalizability of the method on both proprietary and public challenge datasets, in both 2D and 3D settings, as well as across different modalities such as CT and Ultrasound. Code is available at: https://github.com/TopoXLab/TopoInteraction

ARMay 15, 2022
Sibyl: Adaptive and Extensible Data Placement in Hybrid Storage Systems Using Online Reinforcement Learning

Gagandeep Singh, Rakesh Nadig, Jisung Park et al.

Hybrid storage systems (HSS) use multiple different storage devices to provide high and scalable storage capacity at high performance. Recent research proposes various techniques that aim to accurately identify performance-critical data to place it in a "best-fit" storage device. Unfortunately, most of these techniques are rigid, which (1) limits their adaptivity to perform well for a wide range of workloads and storage device configurations, and (2) makes it difficult for designers to extend these techniques to different storage system configurations (e.g., with a different number or different types of storage devices) than the configuration they are designed for. We introduce Sibyl, the first technique that uses reinforcement learning for data placement in hybrid storage systems. Sibyl observes different features of the running workload as well as the storage devices to make system-aware data placement decisions. For every decision it makes, Sibyl receives a reward from the system that it uses to evaluate the long-term performance impact of its decision and continuously optimizes its data placement policy online. We implement Sibyl on real systems with various HSS configurations. Our results show that Sibyl provides 21.6%/19.9% performance improvement in a performance-oriented/cost-oriented HSS configuration compared to the best previous data placement technique. Our evaluation using an HSS configuration with three different storage devices shows that Sibyl outperforms the state-of-the-art data placement policy by 23.9%-48.2%, while significantly reducing the system architect's burden in designing a data placement mechanism that can simultaneously incorporate three storage devices. We show that Sibyl achieves 80% of the performance of an oracle policy that has complete knowledge of future access patterns while incurring a very modest storage overhead of only 124.4 KiB.

ARJul 16, 2022
An Experimental Evaluation of Machine Learning Training on a Real Processing-in-Memory System

Juan Gómez-Luna, Yuxin Guo, Sylvan Brocard et al.

Training machine learning (ML) algorithms is a computationally intensive process, which is frequently memory-bound due to repeatedly accessing large training datasets. As a result, processor-centric systems (e.g., CPU, GPU) suffer from costly data movement between memory units and processing units, which consumes large amounts of energy and execution cycles. Memory-centric computing systems, i.e., with processing-in-memory (PIM) capabilities, can alleviate this data movement bottleneck. Our goal is to understand the potential of modern general-purpose PIM architectures to accelerate ML training. To do so, we (1) implement several representative classic ML algorithms (namely, linear regression, logistic regression, decision tree, K-Means clustering) on a real-world general-purpose PIM architecture, (2) rigorously evaluate and characterize them in terms of accuracy, performance and scaling, and (3) compare to their counterpart implementations on CPU and GPU. Our evaluation on a real memory-centric computing system with more than 2500 PIM cores shows that general-purpose PIM architectures can greatly accelerate memory-bound ML workloads, when the necessary operations and datatypes are natively supported by PIM hardware. For example, our PIM implementation of decision tree is $27\times$ faster than a state-of-the-art CPU version on an 8-core Intel Xeon, and $1.34\times$ faster than a state-of-the-art GPU version on an NVIDIA A100. Our K-Means clustering on PIM is $2.8\times$ and $3.2\times$ than state-of-the-art CPU and GPU versions, respectively. To our knowledge, our work is the first one to evaluate ML training on a real-world PIM architecture. We conclude with key observations, takeaways, and recommendations that can inspire users of ML workloads, programmers of PIM architectures, and hardware designers & architects of future memory-centric computing systems.

AIMar 7, 2022
Scalable Verification of GNN-based Job Schedulers

Haoze Wu, Clark Barrett, Mahmood Sharif et al.

Recently, Graph Neural Networks (GNNs) have been applied for scheduling jobs over clusters, achieving better performance than hand-crafted heuristics. Despite their impressive performance, concerns remain over whether these GNN-based job schedulers meet users' expectations about other important properties, such as strategy-proofness, sharing incentive, and stability. In this work, we consider formal verification of GNN-based job schedulers. We address several domain-specific challenges such as networks that are deeper and specifications that are richer than those encountered when verifying image and NLP classifiers. We develop vegas, the first general framework for verifying both single-step and multi-step properties of these schedulers based on carefully designed algorithms that combine abstractions, refinements, solvers, and proof transfer. Our experimental results show that vegas achieves significant speed-up when verifying important properties of a state-of-the-art GNN-based scheduler compared to previous methods.

LGApr 4, 2023
Incremental Verification of Neural Networks

Shubham Ugare, Debangshu Banerjee, Sasa Misailovic et al.

Complete verification of deep neural networks (DNNs) can exactly determine whether the DNN satisfies a desired trustworthy property (e.g., robustness, fairness) on an infinite set of inputs or not. Despite the tremendous progress to improve the scalability of complete verifiers over the years on individual DNNs, they are inherently inefficient when a deployed DNN is updated to improve its inference speed or accuracy. The inefficiency is because the expensive verifier needs to be run from scratch on the updated DNN. To improve efficiency, we propose a new, general framework for incremental and complete DNN verification based on the design of novel theory, data structure, and algorithms. Our contributions implemented in a tool named IVAN yield an overall geometric mean speedup of 2.4x for verifying challenging MNIST and CIFAR10 classifiers and a geometric mean speedup of 3.8x for the ACAS-XU classifiers over the state-of-the-art baselines.

LGJul 22, 2022
Provable Defense Against Geometric Transformations

Rem Yang, Jacob Laurel, Sasa Misailovic et al.

Geometric image transformations that arise in the real world, such as scaling and rotation, have been shown to easily deceive deep neural networks (DNNs). Hence, training DNNs to be certifiably robust to these perturbations is critical. However, no prior work has been able to incorporate the objective of deterministic certified robustness against geometric transformations into the training procedure, as existing verifiers are exceedingly slow. To address these challenges, we propose the first provable defense for deterministic certified geometric robustness. Our framework leverages a novel GPU-optimized verifier that can certify images between 60$\times$ to 42,600$\times$ faster than existing geometric robustness verifiers, and thus unlike existing works, is fast enough for use in training. Across multiple datasets, our results show that networks trained via our framework consistently achieve state-of-the-art deterministic certified geometric robustness and clean accuracy. Furthermore, for the first time, we verify the geometric robustness of a neural network for the challenging, real-world setting of autonomous driving.

ARAug 22, 2022
LEAPER: Fast and Accurate FPGA-based System Performance Prediction via Transfer Learning

Gagandeep Singh, Dionysios Diamantopoulos, Juan Gómez-Luna et al.

Machine learning has recently gained traction as a way to overcome the slow accelerator generation and implementation process on an FPGA. It can be used to build performance and resource usage models that enable fast early-stage design space exploration. First, training requires large amounts of data (features extracted from design synthesis and implementation tools), which is cost-inefficient because of the time-consuming accelerator design and implementation process. Second, a model trained for a specific environment cannot predict performance or resource usage for a new, unknown environment. In a cloud system, renting a platform for data collection to build an ML model can significantly increase the total-cost-ownership (TCO) of a system. Third, ML-based models trained using a limited number of samples are prone to overfitting. To overcome these limitations, we propose LEAPER, a transfer learning-based approach for prediction of performance and resource usage in FPGA-based systems. The key idea of LEAPER is to transfer an ML-based performance and resource usage model trained for a low-end edge environment to a new, high-end cloud environment to provide fast and accurate predictions for accelerator implementation. Experimental results show that LEAPER (1) provides, on average across six workloads and five FPGAs, 85% accuracy when we use our transferred model for prediction in a cloud environment with 5-shot learning and (2) reduces design-space exploration time for accelerator implementation on an FPGA by 10x, from days to only a few hours.

ARJun 13, 2022
Machine Learning Training on a Real Processing-in-Memory System

Juan Gómez-Luna, Yuxin Guo, Sylvan Brocard et al.

Training machine learning algorithms is a computationally intensive process, which is frequently memory-bound due to repeatedly accessing large training datasets. As a result, processor-centric systems (e.g., CPU, GPU) suffer from costly data movement between memory units and processing units, which consumes large amounts of energy and execution cycles. Memory-centric computing systems, i.e., computing systems with processing-in-memory (PIM) capabilities, can alleviate this data movement bottleneck. Our goal is to understand the potential of modern general-purpose PIM architectures to accelerate machine learning training. To do so, we (1) implement several representative classic machine learning algorithms (namely, linear regression, logistic regression, decision tree, K-means clustering) on a real-world general-purpose PIM architecture, (2) characterize them in terms of accuracy, performance and scaling, and (3) compare to their counterpart implementations on CPU and GPU. Our experimental evaluation on a memory-centric computing system with more than 2500 PIM cores shows that general-purpose PIM architectures can greatly accelerate memory-bound machine learning workloads, when the necessary operations and datatypes are natively supported by PIM hardware. To our knowledge, our work is the first one to evaluate training of machine learning algorithms on a real-world general-purpose PIM architecture.

LGMay 30, 2022
Efficient Reward Poisoning Attacks on Online Deep Reinforcement Learning

Yinglun Xu, Qi Zeng, Gagandeep Singh

We study reward poisoning attacks on online deep reinforcement learning (DRL), where the attacker is oblivious to the learning algorithm used by the agent and the dynamics of the environment. We demonstrate the intrinsic vulnerability of state-of-the-art DRL algorithms by designing a general, black-box reward poisoning framework called adversarial MDP attacks. We instantiate our framework to construct two new attacks which only corrupt the rewards for a small fraction of the total training timesteps and make the agent learn a low-performing policy. We provide a theoretical analysis of the efficiency of our attack and perform an extensive empirical evaluation. Our results show that our attacks efficiently poison agents learning in several popular classical control and MuJoCo environments with a variety of state-of-the-art DRL algorithms, such as DQN, PPO, SAC, etc.

PLDec 25, 2025
Enforcing Temporal Constraints for LLM Agents

Adharsh Kamath, Sishen Zhang, Calvin Xu et al.

LLM-based agents are deployed in safety-critical applications, yet current guardrail systems fail to prevent violations of temporal safety policies, requirements that govern the ordering and sequencing of agent actions. For instance, agents may access sensitive data before authenticating users or process refunds to unauthorized payment methods, violations that require reasoning about sequences of action rather than an individual action. Existing guardrails rely on imprecise natural language instructions or post-hoc monitoring, and provide no formal guarantees that agents will satisfy temporal constraints. We present Agent-C, a novel framework that provides run-time guarantees ensuring LLM agents adhere to formal temporal safety properties. Agent-C introduces a domain-specific language for expressing temporal properties (e.g., authenticate before accessing data), translates specifications to first-order logic, and uses SMT solving to detect non-compliant agent actions during token generation. When the LLM attempts to generate a non-compliant tool call, Agent-C leverages constrained generation techniques to ensure that every action generated by the LLM complies with the specification, and to generate a compliant alternative to a non-compliant agent action. We evaluate Agent-C across two real-world applications: retail customer service and airline ticket reservation system, and multiple language models (open and closed-source). Our results demonstrate that Agent-C achieves perfect safety (100% conformance, 0% harm), while improving task utility compared to state-of-the-art guardrails and unrestricted agents. On SoTA closed-source models, Agent-C improves conformance (77.4% to 100% for Claude Sonnet 4.5 and 83.7% to 100% for GPT-5), while simultaneously increasing utility (71.8% to 75.2% and 66.1% to 70.6%, respectively), representing a new SoTA frontier for reliable agentic reasoning.

CRDec 19, 2023Code
Bypassing the Safety Training of Open-Source LLMs with Priming Attacks

Jason Vega, Isha Chaudhary, Changming Xu et al.

With the recent surge in popularity of LLMs has come an ever-increasing need for LLM safety training. In this paper, we investigate the fragility of SOTA open-source LLMs under simple, optimization-free attacks we refer to as $\textit{priming attacks}$, which are easy to execute and effectively bypass alignment from safety training. Our proposed attack improves the Attack Success Rate on Harmful Behaviors, as measured by Llama Guard, by up to $3.3\times$ compared to baselines. Source code and data are available at https://github.com/uiuc-focal-lab/llm-priming-attacks.

PFFeb 14, 2023
COMET: Neural Cost Model Explanation Framework

Isha Chaudhary, Alex Renda, Charith Mendis et al.

Cost models predict the cost of executing given assembly code basic blocks on a specific microarchitecture. Recently, neural cost models have been shown to be fairly accurate and easy to construct. They can replace heavily engineered analytical cost models used in mainstream compiler workflows. However, their black-box nature discourages their adoption. In this work, we develop the first framework, COMET, for generating faithful, generalizable, and intuitive explanations for neural cost models. We generate and compare COMET's explanations for the popular neural cost model, Ithemal against those for an accurate CPU simulation-based cost model, uiCA. Our empirical findings show an inverse correlation between the prediction errors of Ithemal and uiCA and the granularity of basic block features in COMET's explanations for them, thus indicating potential reasons for the higher error of Ithemal with respect to uiCA.

LGMar 3, 2024Code
SynCode: LLM Generation with Grammar Augmentation

Shubham Ugare, Tarun Suresh, Hangoo Kang et al.

LLMs are widely used in complex AI applications. These applications underscore the need for LLM outputs to adhere to a specific format, for their integration with other components in the systems. Typically the format rules e.g., for data serialization formats such as JSON, YAML, or Code in Programming Language are expressed as context-free grammar (CFG). Due to the hallucinations and unreliability of LLMs, instructing LLMs to adhere to specified syntax becomes an increasingly important challenge. We present SynCode, a novel framework for efficient and general syntactical decoding with LLMs, to address this challenge. SynCode ensures soundness and completeness with respect to the CFG of a formal language, effectively retaining valid tokens while filtering out invalid ones. SynCode uses an offline-constructed, efficient lookup table, the DFA mask store, derived from the DFA of the language's grammar for efficient generation. SynCode seamlessly integrates with any language defined by CFG, as evidenced by experiments focusing on generating JSON, Python, and Go outputs. Our experiments evaluating the effectiveness of SynCode for JSON generation demonstrate that SynCode eliminates all syntax errors and significantly outperforms state-of-the-art baselines. Furthermore, our results underscore how SynCode significantly reduces 96.07% of syntax errors in generated Python and Go code, showcasing its substantial impact on enhancing syntactical precision in LLM generation. Our code is available at https://github.com/uiuc-focal-lab/syncode

58.0PLApr 25
Evolving Abstract Transformers for Gradient-Guided, Adaptable Abstract Interpretation

Shaurya Gomber, Debangshu Banerjee, Gagandeep Singh

Current numerical abstract interpretation relies on fixed, hand-crafted, instruction-specific transformers tailored to each domain, causing three key limitations: transformers cannot be reused across domains; precise compositional reasoning over instruction sequences is difficult; and all downstream tasks must use the same fixed transformer regardless of precision or efficiency needs.To address this, we propose the Evolving Abstract Transformer, which replaces the fixed single-output design with an adaptable search over a parametric space of sound outputs via two algorithms. First, the Universal Parametric Output Space Encoder (UPOSE) constructs a compact parametric space of sound outputs for any polyhedral numerical domain and any operator in the Quadratic-Bounded Guarded Operators (QGO) class, covering both individual instructions and structured sequences. Second, the Adaptive Gradient Guidance (AGG) algorithm leverages the differentiable structure of UPOSE's output space to efficiently search it according to downstream objectives and available runtime, continually evolving the output as more time is provided. We implement these ideas in the AbsEvolve framework and evaluate across three numerical abstract domains: Zones, Octagons, and Polyhedra. Results show the evolving transformer works across domains and instructions, enables efficient precision-efficiency tradeoffs by adjusting number of gradient steps in the search, and reaches the most precise invariants up to 3.2x faster than existing baselines.

LGJan 31, 2023
Interpreting Robustness Proofs of Deep Neural Networks

Debangshu Banerjee, Avaljot Singh, Gagandeep Singh

In recent years numerous methods have been developed to formally verify the robustness of deep neural networks (DNNs). Though the proposed techniques are effective in providing mathematical guarantees about the DNNs behavior, it is not clear whether the proofs generated by these methods are human-interpretable. In this paper, we bridge this gap by developing new concepts, algorithms, and representations to generate human understandable interpretations of the proofs. Leveraging the proposed method, we show that the robustness proofs of standard DNNs rely on spurious input features, while the proofs of DNNs trained to be provably robust filter out even the semantically meaningful features. The proofs for the DNNs combining adversarial and provably robust training are the most effective at selectively filtering out spurious features as well as relying on human-understandable input features.

PLFeb 13, 2025Code
CRANE: Reasoning with constrained LLM generation

Debangshu Banerjee, Tarun Suresh, Shubham Ugare et al.

Code generation, symbolic math reasoning, and other tasks require LLMs to produce outputs that are both syntactically and semantically correct. Constrained LLM generation is a promising direction to enforce adherence to formal grammar, but prior works have empirically observed that strict enforcement of formal constraints often diminishes the reasoning capabilities of LLMs. In this work, we first provide a theoretical explanation for why constraining LLM outputs to very restrictive grammars that only allow syntactically valid final answers reduces the reasoning capabilities of the model. Second, we demonstrate that by augmenting the output grammar with carefully designed additional rules, it is always possible to preserve the reasoning capabilities of the LLM while ensuring syntactic and semantic correctness in its outputs. Building on these theoretical insights, we propose a reasoning-augmented constrained decoding algorithm, CRANE, which effectively balances the correctness of constrained generation with the flexibility of unconstrained generation. Experiments on multiple open-source LLMs and benchmarks show that CRANE significantly outperforms both state-of-the-art constrained decoding strategies and standard unconstrained decoding, showing up to 10% points accuracy improvement over baselines on challenging symbolic reasoning benchmarks GSM-symbolic and FOLIO.

67.4LGMar 26
SEVerA: Verified Synthesis of Self-Evolving Agents

Debangshu Banerjee, Changming Xu, Gagandeep Singh

Recent advances have shown the effectiveness of self-evolving LLM agents on tasks such as program repair and scientific discovery. In this paradigm, a planner LLM synthesizes an agent program that invokes parametric models, including LLMs, which are then tuned per task to improve performance. However, existing self-evolving agent frameworks provide no formal guarantees of safety or correctness. Because such programs are often executed autonomously on unseen inputs, this lack of guarantees raises reliability and security concerns. We formulate agentic code generation as a constrained learning problem, combining hard formal specifications with soft objectives capturing task utility. We introduce Formally Guarded Generative Models (FGGM), which allow the planner LLM to specify a formal output contract for each generative model call using first-order logic. Each FGGM call wraps the underlying model in a rejection sampler with a verified fallback, ensuring every returned output satisfies the contract for any input and parameter setting. Building on FGGM, we present SEVerA (Self-Evolving Verified Agents), a three-stage framework: Search synthesizes candidate parametric programs containing FGGM calls; Verification proves correctness with respect to hard constraints for all parameter values, reducing the problem to unconstrained learning; and Learning applies scalable gradient-based optimization, including GRPO-style fine-tuning, to improve the soft objective while preserving correctness. We evaluate SEVerA on Dafny program verification, symbolic math synthesis, and policy-compliant agentic tool use ($τ^2$-bench). Across tasks, SEVerA achieves zero constraint violations while improving performance over unconstrained and SOTA baselines, showing that formal behavioral constraints not only guarantee correctness but also steer synthesis toward higher-quality agents.

LGJun 22, 2022
Robust Universal Adversarial Perturbations

Changming Xu, Gagandeep Singh

Universal Adversarial Perturbations (UAPs) are imperceptible, image-agnostic vectors that cause deep neural networks (DNNs) to misclassify inputs with high probability. In practical attack scenarios, adversarial perturbations may undergo transformations such as changes in pixel intensity, scaling, etc. before being added to DNN inputs. Existing methods do not create UAPs robust to these real-world transformations, thereby limiting their applicability in practical attack scenarios. In this work, we introduce and formulate UAPs robust against real-world transformations. We build an iterative algorithm using probabilistic robustness bounds and construct such UAPs robust to transformations generated by composing arbitrary sub-differentiable transformation functions. We perform an extensive evaluation on the popular CIFAR-10 and ILSVRC 2012 datasets measuring our UAPs' robustness under a wide range common, real-world transformations such as rotation, contrast changes, etc. We further show that by using a set of primitive transformations our method can generalize well to unseen transformations such as fog, JPEG compression, etc. Our results show that our method can generate UAPs up to 23% more robust than state-of-the-art baselines.

CRMar 24, 2024Code
Is The Watermarking Of LLM-Generated Code Robust?

Tarun Suresh, Shubham Ugare, Gagandeep Singh et al.

We present the first in depth study on the robustness of existing watermarking techniques applied to code generated by large language models (LLMs). As LLMs increasingly contribute to software development, watermarking has emerged as a potential solution for detecting AI generated code and mitigating misuse, such as plagiarism or the automated generation of malicious programs. While previous research has demonstrated the resilience of watermarking in the text setting, our work reveals that watermarking techniques are significantly more fragile in code-based contexts. Specifically, we show that simple semantic-preserving transformations, such as variable renaming and dead code insertion, can effectively erase watermarks without altering the program's functionality. To systematically evaluate watermark robustness, we develop an algorithm that traverses the Abstract Syntax Tree (AST) of a watermarked program and applies a sequence of randomized, semantics-preserving transformations. Our experimental results, conducted on Python code generated by different LLMs, indicate that even minor modifications can drastically reduce watermark detectability, with true positive rates (TPR) dropping below 50% in many cases. Our code is publicly available at https://github.com/uiuc-arc/llm-code-watermark.

LGNov 5, 2024Code
Stochastic Monkeys at Play: Random Augmentations Cheaply Break LLM Safety Alignment

Jason Vega, Junsheng Huang, Gaokai Zhang et al.

Safety alignment of Large Language Models (LLMs) has recently become a critical objective of model developers. In response, a growing body of work has been investigating how safety alignment can be bypassed through various jailbreaking methods, such as adversarial attacks. However, these jailbreak methods can be rather costly or involve a non-trivial amount of creativity and effort, introducing the assumption that malicious users are high-resource or sophisticated. In this paper, we study how simple random augmentations to the input prompt affect safety alignment effectiveness in state-of-the-art LLMs, such as Llama 3 and Qwen 2. We perform an in-depth evaluation of 17 different models and investigate the intersection of safety under random augmentations with multiple dimensions: augmentation type, model size, quantization, fine-tuning-based defenses, and decoding strategies (e.g., sampling temperature). We show that low-resource and unsophisticated attackers, i.e. $\textit{stochastic monkeys}$, can significantly improve their chances of bypassing alignment with just 25 random augmentations per prompt. Source code and data: https://github.com/uiuc-focal-lab/stochastic-monkeys/

PLDec 2, 2025
Lumos: Let there be Language Model System Certification

Isha Chaudhary, Vedaant Jain, Avaljot Singh et al.

We introduce the first principled framework, Lumos, for specifying and formally certifying Language Model System (LMS) behaviors. Lumos is an imperative probabilistic programming DSL over graphs, with constructs to generate independent and identically distributed prompts for LMS. It offers a structured view of prompt distributions via graphs, forming random prompts from sampled subgraphs. Lumos supports certifying LMS for arbitrary prompt distributions via integration with statistical certifiers. We provide hybrid (operational and denotational) semantics for Lumos, providing a rigorous way to interpret the specifications. Using only a small set of composable constructs, Lumos can encode existing LMS specifications, including complex relational and temporal specifications. It also facilitates specifying new properties - we present the first safety specifications for vision-language models (VLMs) in autonomous driving scenarios developed with Lumos. Using these, we show that the state-of-the-art VLM Qwen-VL exhibits critical safety failures, producing incorrect and unsafe responses with at least 90% probability in right-turn scenarios under rainy driving conditions, revealing substantial safety risks. Lumos's modular structure allows easy modification of the specifications, enabling LMS certification to stay abreast with the rapidly evolving threat landscape. We further demonstrate that specification programs written in Lumos enable finding specific failure cases exhibited by state-of-the-art LMS. Lumos is the first systematic and extensible language-based framework for specifying and certifying LMS behaviors, paving the way for a wider adoption of LMS certification.

LGOct 31, 2024Code
ARQ: A Mixed-Precision Quantization Framework for Accurate and Certifiably Robust DNNs

Yuchen Yang, Shubham Ugare, Yifan Zhao et al.

Mixed precision quantization has become an important technique for optimizing the execution of deep neural networks (DNNs). Certified robustness, which provides provable guarantees about a model's ability to withstand different adversarial perturbations, has rarely been addressed in quantization due to unacceptably high cost of certifying robustness. This paper introduces ARQ, an innovative mixed-precision quantization method that not only preserves the clean accuracy of the smoothed classifiers but also maintains their certified robustness. ARQ uses reinforcement learning to find accurate and robust DNN quantization, while efficiently leveraging randomized smoothing, a popular class of statistical DNN verification algorithms. ARQ consistently performs better than multiple state-of-the-art quantization techniques across all the benchmarks and the input perturbation levels. The performance of ARQ quantized networks reaches that of the original DNN with floating-point weights, but with only 1.5% instructions and the highest certified radius. ARQ code is available at https://anonymous.4open.science/r/ARQ-FE4B.

52.3AIMay 12
Revealing Interpretable Failure Modes of VLMs

Isha Chaudhary, Vedaant V Jain, Kavya Sachdeva et al.

Vision-Language Models (VLMs) are increasingly used in safety-critical applications because of their broad reasoning capabilities and ability to generalize with minimal task-specific engineering. Despite these advantages, they can exhibit catastrophic failures in specific real-world situations, constituting failure modes. We introduce REVELIO, a framework for systematically uncovering interpretable failure modes in VLMs. We define a failure mode as a composition of interpretable, domain-relevant concepts-such as pedestrian proximity or adverse weather conditions-under which a target VLM consistently behaves incorrectly. Identifying such failures requires searching over an exponentially large discrete combinatorial space. To address this challenge, REVELIO combines two search procedures: a diversity-aware beam search that efficiently maps the failure landscape, and a Gaussian-process Thompson Sampling strategy that enables broader exploration of complex failure modes. We apply REVELIO to autonomous driving and indoor robotics domains, uncovering previously unreported vulnerabilities in state-of-the-art VLMs. In driving environments, the models often demonstrate weak spatial grounding and fail to account for major obstructions, leading to recommendations that would result in simulated crashes. In indoor robotics tasks, VLMs either miss safety hazards or behave excessively conservatively, producing false alarms and reducing operational efficiency. By identifying structured and interpretable failure modes, REVELIO offers actionable insights that can support targeted VLM safety improvements.

CRDec 5, 2025Code
Matching Ranks Over Probability Yields Truly Deep Safety Alignment

Jason Vega, Gagandeep Singh

A frustratingly easy technique known as the prefilling attack has been shown to effectively circumvent the safety alignment of frontier LLMs by simply prefilling the assistant response with an affirmative prefix before decoding. In response, recent work proposed a supervised fine-tuning (SFT) defense using data augmentation to achieve a \enquote{deep} safety alignment, allowing the model to generate natural language refusals immediately following harmful prefills. Unfortunately, we show in this work that the "deep" safety alignment produced by such an approach is in fact not very deep. A generalization of the prefilling attack, which we refer to as the Rank-Assisted Prefilling (RAP) attack, can effectively extract harmful content from models fine-tuned with the data augmentation defense by selecting low-probability "harmful" tokens from the top 20 predicted next tokens at each step (thus ignoring high-probability "refusal" tokens). We argue that this vulnerability is enabled due to the "gaming" of the SFT objective when the target distribution entropies are low, where low fine-tuning loss is achieved by shifting large probability mass to a small number of refusal tokens while neglecting the high ranks of harmful tokens. We then propose a new perspective on achieving deep safety alignment by matching the token ranks of the target distribution, rather than their probabilities. This perspective yields a surprisingly simple fix to the data augmentation defense based on regularizing the attention placed on harmful prefill tokens, an approach we call PRefill attEntion STOpping (PRESTO). Adding PRESTO yields up to a 4.7x improvement in the mean StrongREJECT score under RAP attacks across three popular open-source LLMs, with low impact to model utility.

CLOct 16, 2025Code
From Loop Nests to Silicon: Mapping AI Workloads onto AMD NPUs with MLIR-AIR

Erwei Wang, Samuel Bayliss, Andra Bisca et al.

General-purpose compilers abstract away parallelism, locality, and synchronization, limiting their effectiveness on modern spatial architectures. As modern computing architectures increasingly rely on fine-grained control over data movement, execution order, and compute placement for performance, compiler infrastructure must provide explicit mechanisms for orchestrating compute and data to fully exploit such architectures. We introduce MLIR-AIR, a novel, open-source compiler stack built on MLIR that bridges the semantic gap between high-level workloads and fine-grained spatial architectures such as AMD's NPUs. MLIR-AIR defines the AIR dialect, which provides structured representations for asynchronous and hierarchical operations across compute and memory resources. AIR primitives allow the compiler to orchestrate spatial scheduling, distribute computation across hardware regions, and overlap communication with computation without relying on ad hoc runtime coordination or manual scheduling. We demonstrate MLIR-AIR's capabilities through two case studies: matrix multiplication and the multi-head attention block from the LLaMA 2 model. For matrix multiplication, MLIR-AIR achieves up to 78.7% compute efficiency and generates implementations with performance almost identical to state-of-the-art, hand-optimized matrix multiplication written using the lower-level, close-to-metal MLIR-AIE framework. For multi-head attention, we demonstrate that the AIR interface supports fused implementations using approximately 150 lines of code, enabling tractable expression of complex workloads with efficient mapping to spatial hardware. MLIR-AIR transforms high-level structured control flow into spatial programs that efficiently utilize the compute fabric and memory hierarchy of an NPU, leveraging asynchronous execution, tiling, and communication overlap through compiler-managed scheduling.

CVSep 30, 2025Code
DGM4+: Dataset Extension for Global Scene Inconsistency

Gagandeep Singh, Samudi Amarsinghe, Priyanka Singh et al.

The rapid advances in generative models have significantly lowered the barrier to producing convincing multimodal disinformation. Fabricated images and manipulated captions increasingly co-occur to create persuasive false narratives. While the Detecting and Grounding Multi-Modal Media Manipulation (DGM4) dataset established a foundation for research in this area, it is restricted to local manipulations such as face swaps, attribute edits, and caption changes. This leaves a critical gap: global inconsistencies, such as mismatched foregrounds and backgrounds, which are now prevalent in real-world forgeries. To address this, we extend DGM4 with 5,000 high-quality samples that introduce Foreground-Background (FG-BG) mismatches and their hybrids with text manipulations. Using OpenAI's gpt-image-1 and carefully designed prompts, we generate human-centric news-style images where authentic figures are placed into absurd or impossible backdrops (e.g., a teacher calmly addressing students on the surface of Mars). Captions are produced under three conditions: literal, text attribute, and text split, yielding three new manipulation categories: FG-BG, FG-BG+TA, and FG-BG+TS. Quality control pipelines enforce one-to-three visible faces, perceptual hash deduplication, OCR-based text scrubbing, and realistic headline length. By introducing global manipulations, our extension complements existing datasets, creating a benchmark DGM4+ that tests detectors on both local and global reasoning. This resource is intended to strengthen evaluation of multimodal models such as HAMMER, which currently struggle with FG-BG inconsistencies. We release our DGM4+ dataset and generation script at https://github.com/Gaganx0/DGM4plus

CVSep 30, 2025Code
SGS: Segmentation-Guided Scoring for Global Scene Inconsistencies

Gagandeep Singh, Samudi Amarsinghe, Urawee Thani et al.

We extend HAMMER, a state-of-the-art model for multimodal manipulation detection, to handle global scene inconsistencies such as foreground-background (FG-BG) mismatch. While HAMMER achieves strong performance on the DGM4 dataset, it consistently fails when the main subject is contextually misplaced into an implausible background. We diagnose this limitation as a combination of label-space bias, local attention focus, and spurious text-foreground alignment. To remedy this without retraining, we propose a lightweight segmentation-guided scoring (SGS) pipeline. SGS uses person/face segmentation masks to separate foreground and background regions, extracts embeddings with a joint vision-language model, and computes region-aware coherence scores. These scores are fused with HAMMER's original prediction to improve binary detection, grounding, and token-level explanations. SGS is inference-only, incurs negligible computational overhead, and significantly enhances robustness to global manipulations. This work demonstrates the importance of region-aware reasoning in multimodal disinformation detection. We release scripts for segmentation and scoring at https://github.com/Gaganx0/HAMMER-sgs

CVAug 13, 2025Code
GazeLT: Visual attention-guided long-tailed disease classification in chest radiographs

Moinak Bhattacharya, Gagandeep Singh, Shubham Jain et al.

In this work, we present GazeLT, a human visual attention integration-disintegration approach for long-tailed disease classification. A radiologist's eye gaze has distinct patterns that capture both fine-grained and coarser level disease related information. While interpreting an image, a radiologist's attention varies throughout the duration; it is critical to incorporate this into a deep learning framework to improve automated image interpretation. Another important aspect of visual attention is that apart from looking at major/obvious disease patterns, experts also look at minor/incidental findings (few of these constituting long-tailed classes) during the course of image interpretation. GazeLT harnesses the temporal aspect of the visual search process, via an integration and disintegration mechanism, to improve long-tailed disease classification. We show the efficacy of GazeLT on two publicly available datasets for long-tailed disease classification, namely the NIH-CXR-LT (n=89237) and the MIMIC-CXR-LT (n=111898) datasets. GazeLT outperforms the best long-tailed loss by 4.1% and the visual attention-based baseline by 21.7% in average accuracy metrics for these datasets. Our code is available at https://github.com/lordmoinak1/gazelt.

ARMar 26, 2025Code
Harmonia: A Multi-Agent Reinforcement Learning Approach to Data Placement and Migration in Hybrid Storage Systems

Rakesh Nadig, Vamanan Arulchelvan, Rahul Bera et al.

Hybrid storage systems (HSS) integrate multiple storage devices with diverse characteristics to deliver high performance and capacity at low cost. The performance of an HSS highly depends on the effectiveness of two key policies: (1) the data-placement policy, which determines the best-fit storage device for incoming data, and (2) the data-migration policy, which dynamically rearranges stored data (i.e., prefetches hot data and evicts cold data) across the devices to sustain high HSS performance. Prior works optimize either data placement or data migration in isolation, which leads to suboptimal HSS performance. Unfortunately, no prior work tries to optimize both policies together. Our goal is to design a holistic data-management technique that optimizes both data-placement and data-migration policies to fully exploit the potential of an HSS, and thus significantly improve system performance. We propose Harmonia, a multi-agent reinforcement learning (RL)-based data-management technique that employs two lightweight autonomous RL agents, a data-placement agent and a data-migration agent, that adapt their policies for the current workload and HSS configuration while coordinating with each other to improve overall HSS performance. We evaluate Harmonia on real HSS configurations with up to four heterogeneous storage devices and seventeen data-intensive workloads. On performance-optimized (cost-optimized) HSS with two storage devices, Harmonia outperforms the best-performing prior approach by 49.5% (31.7%) on average. On an HSS with three (four) devices, Harmonia outperforms the best-performing prior work by 37.0% (42.0%) on average. Harmonia's performance benefits come with low latency (240ns for inference) and storage overheads (206 KiB in DRAM for both RL agents combined). We will open-source Harmonia's implementation to aid future research on HSS.

LGSep 1, 2021Code
Shared Certificates for Neural Network Verification

Marc Fischer, Christian Sprecher, Dimitar I. Dimitrov et al.

Existing neural network verifiers compute a proof that each input is handled correctly under a given perturbation by propagating a symbolic abstraction of reachable values at each layer. This process is repeated from scratch independently for each input (e.g., image) and perturbation (e.g., rotation), leading to an expensive overall proof effort when handling an entire dataset. In this work, we introduce a new method for reducing this verification cost without losing precision based on a key insight that abstractions obtained at intermediate layers for different inputs and perturbations can overlap or contain each other. Leveraging our insight, we introduce the general concept of shared certificates, enabling proof effort reuse across multiple inputs to reduce overall verification costs. We perform an extensive experimental evaluation to demonstrate the effectiveness of shared certificates in reducing the verification cost on a range of datasets and attack specifications on image classifiers including the popular patch and geometric perturbations. We release our implementation at https://github.com/eth-sri/proof-sharing.

41.2LGApr 14
Towards Generalized Certified Robustness with Multi-Norm Training

Enyi Jiang, David S. Cheung, Gagandeep Singh

Existing certified training methods can only train models to be robust against a certain perturbation type (e.g. $l_\infty$ or $l_2$). However, an $l_\infty$ certifiably robust model may not be certifiably robust against $l_2$ perturbation (and vice versa) and also has low robustness against other perturbations (e.g. geometric and patch transformation). By constructing a theoretical framework to analyze and mitigate the tradeoff, we propose the first multi-norm certified training framework \textbf{CURE}, consisting of several multi-norm certified training methods, to attain better \emph{union robustness} when training from scratch or fine-tuning a pre-trained certified model. Inspired by our theoretical findings, we devise bound alignment and connect natural training with certified training for better union robustness. Compared with SOTA-certified training, \textbf{CURE} improves union robustness to $32.0\%$ on MNIST, $25.8\%$ on CIFAR-10, and $10.6\%$ on TinyImagenet across different epsilon values. It leads to better generalization on a diverse set of challenging unseen geometric and patch perturbations to $6.8\%$ and $16.0\%$ on CIFAR-10. Overall, our contributions pave a path towards \textit{generalized certified robustness}.

IVNov 5, 2024
TopoTxR: A topology-guided deep convolutional network for breast parenchyma learning on DCE-MRIs

Fan Wang, Zhilin Zou, Nicole Sakla et al.

Characterization of breast parenchyma in dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) is a challenging task owing to the complexity of underlying tissue structures. Existing quantitative approaches, like radiomics and deep learning models, lack explicit quantification of intricate and subtle parenchymal structures, including fibroglandular tissue. To address this, we propose a novel topological approach that explicitly extracts multi-scale topological structures to better approximate breast parenchymal structures, and then incorporates these structures into a deep-learning-based prediction model via an attention mechanism. Our topology-informed deep learning model, \emph{TopoTxR}, leverages topology to provide enhanced insights into tissues critical for disease pathophysiology and treatment response. We empirically validate \emph{TopoTxR} using the VICTRE phantom breast dataset, showing that the topological structures extracted by our model effectively approximate the breast parenchymal structures. We further demonstrate \emph{TopoTxR}'s efficacy in predicting response to neoadjuvant chemotherapy. Our qualitative and quantitative analyses suggest differential topological behavior of breast tissue in treatment-naïve imaging, in patients who respond favorably to therapy as achieving pathological complete response (pCR) versus those who do not. In a comparative analysis with several baselines on the publicly available I-SPY 1 dataset (N=161, including 47 patients with pCR and 114 without) and the Rutgers proprietary dataset (N=120, with 69 patients achieving pCR and 51 not), \emph{TopoTxR} demonstrates a notable improvement, achieving a 2.6\% increase in accuracy and a 4.6\% enhancement in AUC compared to the state-of-the-art method.

LGMay 16, 2024
Relational DNN Verification With Cross Executional Bound Refinement

Debangshu Banerjee, Gagandeep Singh

We focus on verifying relational properties defined over deep neural networks (DNNs) such as robustness against universal adversarial perturbations (UAP), certified worst-case hamming distance for binary string classifications, etc. Precise verification of these properties requires reasoning about multiple executions of the same DNN. However, most of the existing works in DNN verification only handle properties defined over single executions and as a result, are imprecise for relational properties. Though few recent works for relational DNN verification, capture linear dependencies between the inputs of multiple executions, they do not leverage dependencies between the outputs of hidden layers producing imprecise results. We develop a scalable relational verifier RACoon that utilizes cross-execution dependencies at all layers of the DNN gaining substantial precision over SOTA baselines on a wide range of datasets, networks, and relational properties.

LGFeb 5
Formal Synthesis of Certifiably Robust Neural Lyapunov-Barrier Certificates

Chengxiao Wang, Haoze Wu, Gagandeep Singh

Neural Lyapunov and barrier certificates have recently been used as powerful tools for verifying the safety and stability properties of deep reinforcement learning (RL) controllers. However, existing methods offer guarantees only under fixed ideal unperturbed dynamics, limiting their reliability in real-world applications where dynamics may deviate due to uncertainties. In this work, we study the problem of synthesizing \emph{robust neural Lyapunov barrier certificates} that maintain their guarantees under perturbations in system dynamics. We formally define a robust Lyapunov barrier function and specify sufficient conditions based on Lipschitz continuity that ensure robustness against bounded perturbations. We propose practical training objectives that enforce these conditions via adversarial training, Lipschitz neighborhood bound, and global Lipschitz regularization. We validate our approach in two practically relevant environments, Inverted Pendulum and 2D Docking. The former is a widely studied benchmark, while the latter is a safety-critical task in autonomous systems. We show that our methods significantly improve both certified robustness bounds (up to $4.6$ times) and empirical success rates under strong perturbations (up to $2.4$ times) compared to the baseline. Our results demonstrate effectiveness of training robust neural certificates for safe RL under perturbations in dynamics.

LGMay 29, 2025
DINGO: Constrained Inference for Diffusion LLMs

Tarun Suresh, Debangshu Banerjee, Shubham Ugare et al.

Diffusion LLMs have emerged as a promising alternative to conventional autoregressive LLMs, offering significant potential for improved runtime efficiency. However, existing diffusion models lack the ability to provably enforce user-specified formal constraints, such as regular expressions, which makes them unreliable for tasks that require structured outputs, such as fixed-schema JSON generation. Unlike autoregressive models that generate tokens sequentially, diffusion LLMs predict a block of tokens in parallel. This parallelism makes traditional constrained decoding algorithms, which are designed for sequential token prediction, ineffective at preserving the true output distribution. To address this limitation, we propose DINGO, a dynamic programming-based constrained decoding strategy that is both efficient and provably distribution-preserving. DINGO enables sampling of output strings with the highest probability under the model's predicted distribution, while strictly satisfying any user-specified regular expression. On standard symbolic math and JSON generation benchmarks, DINGO achieves up to a 68 percentage point improvement over unconstrained inference

AIMay 23, 2025
Misaligning Reasoning with Answers -- A Framework for Assessing LLM CoT Robustness

Enyi Jiang, Changming Xu, Nischay Singh et al.

LLMs' decision-making process is opaque, prompting the need for explanation techniques like Chain-of-Thought. To investigate the relationship between answer and reasoning, we design a novel evaluation framework, MATCHA. In domains like education and healthcare, reasoning is key for model trustworthiness. MATCHA reveals that LLMs under input perturbations can give inconsistent or nonsensical reasoning. Additionally, we use LLM judges to assess reasoning robustness across models. Our results show that LLMs exhibit greater vulnerability to input perturbations for multi-step and commonsense tasks than compared to logical tasks. Also, we show non-trivial transfer rates of our successful examples to black-box models. Our evaluation framework helps to better understand LLM reasoning mechanisms and guides future models toward more robust and reasoning-driven architectures, enforcing answer-reasoning consistency.

LGJun 12, 2025
Data Shifts Hurt CoT: A Theoretical Study

Lang Yin, Debangshu Banerjee, Gagandeep Singh

Chain of Thought (CoT) has been applied to various large language models (LLMs) and proven to be effective in improving the quality of outputs. In recent studies, transformers are proven to have absolute upper bounds in terms of expressive power, and consequently, they cannot solve many computationally difficult problems. However, empowered by CoT, transformers are proven to be able to solve some difficult problems effectively, such as the $k$-parity problem. Nevertheless, those works rely on two imperative assumptions: (1) identical training and testing distribution, and (2) corruption-free training data with correct reasoning steps. However, in the real world, these assumptions do not always hold. Although the risks of data shifts have caught attention, our work is the first to rigorously study the exact harm caused by such shifts to the best of our knowledge. Focusing on the $k$-parity problem, in this work we investigate the joint impact of two types of data shifts: the distribution shifts and data poisoning, on the quality of trained models obtained by a well-established CoT decomposition. In addition to revealing a surprising phenomenon that CoT leads to worse performance on learning parity than directly generating the prediction, our technical results also give a rigorous and comprehensive explanation of the mechanistic reasons of such impact.

IVMay 29, 2025
ImmunoDiff: A Diffusion Model for Immunotherapy Response Prediction in Lung Cancer

Moinak Bhattacharya, Judy Huang, Amna F. Sher et al.

Accurately predicting immunotherapy response in Non-Small Cell Lung Cancer (NSCLC) remains a critical unmet need. Existing radiomics and deep learning-based predictive models rely primarily on pre-treatment imaging to predict categorical response outcomes, limiting their ability to capture the complex morphological and textural transformations induced by immunotherapy. This study introduces ImmunoDiff, an anatomy-aware diffusion model designed to synthesize post-treatment CT scans from baseline imaging while incorporating clinically relevant constraints. The proposed framework integrates anatomical priors, specifically lobar and vascular structures, to enhance fidelity in CT synthesis. Additionally, we introduce a novel cbi-Adapter, a conditioning module that ensures pairwise-consistent multimodal integration of imaging and clinical data embeddings, to refine the generative process. Additionally, a clinical variable conditioning mechanism is introduced, leveraging demographic data, blood-based biomarkers, and PD-L1 expression to refine the generative process. Evaluations on an in-house NSCLC cohort treated with immune checkpoint inhibitors demonstrate a 21.24% improvement in balanced accuracy for response prediction and a 0.03 increase in c-index for survival prediction. Code will be released soon.

LGMay 15, 2024
Cross-Input Certified Training for Universal Perturbations

Changming Xu, Gagandeep Singh

Existing work in trustworthy machine learning primarily focuses on single-input adversarial perturbations. In many real-world attack scenarios, input-agnostic adversarial attacks, e.g. universal adversarial perturbations (UAPs), are much more feasible. Current certified training methods train models robust to single-input perturbations but achieve suboptimal clean and UAP accuracy, thereby limiting their applicability in practical applications. We propose a novel method, CITRUS, for certified training of networks robust against UAP attackers. We show in an extensive evaluation across different datasets, architectures, and perturbation magnitudes that our method outperforms traditional certified training methods on standard accuracy (up to 10.3\%) and achieves SOTA performance on the more practical certified UAP accuracy metric.

IVApr 6, 2025
BrainMRDiff: A Diffusion Model for Anatomically Consistent Brain MRI Synthesis

Moinak Bhattacharya, Saumya Gupta, Annie Singh et al.

Accurate brain tumor diagnosis relies on the assessment of multiple Magnetic Resonance Imaging (MRI) sequences. However, in clinical practice, the acquisition of certain sequences may be affected by factors like motion artifacts or contrast agent contraindications, leading to suboptimal outcome, such as poor image quality. This can then affect image interpretation by radiologists. Synthesizing high quality MRI sequences has thus become a critical research focus. Though recent advancements in controllable generative AI have facilitated the synthesis of diagnostic quality MRI, ensuring anatomical accuracy remains a significant challenge. Preserving critical structural relationships between different anatomical regions is essential, as even minor structural or topological inconsistencies can compromise diagnostic validity. In this work, we propose BrainMRDiff, a novel topology-preserving, anatomy-guided diffusion model for synthesizing brain MRI, leveraging brain and tumor anatomies as conditioning inputs. To achieve this, we introduce two key modules: Tumor+Structure Aggregation (TSA) and Topology-Guided Anatomy Preservation (TGAP). TSA integrates diverse anatomical structures with tumor information, forming a comprehensive conditioning mechanism for the diffusion process. TGAP enforces topological consistency during reverse denoising diffusion process; both these modules ensure that the generated image respects anatomical integrity. Experimental results demonstrate that BrainMRDiff surpasses existing baselines, achieving performance improvements of 23.33% on the BraTS-AG dataset and 33.33% on the BraTS-Met dataset. Code will be made publicly available soon.

CLJul 26, 2025
A Tensor-Based Compiler and a Runtime for Neuron-Level DNN Certifier Specifications

Avaljot Singh, Yamin Chandini Sarita, Aditya Mishra et al.

The uninterpretability of DNNs has led to the adoption of abstract interpretation-based certification as a practical means to establish trust in real-world systems that rely on DNNs. However, the current landscape supports only a limited set of certifiers, and developing new ones or modifying existing ones for different applications remains difficult. This is because the mathematical design of certifiers is expressed at the neuron level, while their implementations are optimized and executed at the tensor level. This mismatch creates a semantic gap between design and implementation, making manual bridging both complex and expertise-intensive -- requiring deep knowledge in formal methods, high-performance computing, etc. We propose a compiler framework that automatically translates neuron-level specifications of DNN certifiers into tensor-based, layer-level implementations. This is enabled by two key innovations: a novel stack-based intermediate representation (IR) and a shape analysis that infers the implicit tensor operations needed to simulate the neuron-level semantics. During lifting, the shape analysis creates tensors in the minimal shape required to perform the corresponding operations. The IR also enables domain-specific optimizations as rewrites. At runtime, the resulting tensor computations exhibit sparsity tied to the DNN architecture. This sparsity does not align well with existing formats. To address this, we introduce g-BCSR, a double-compression format that represents tensors as collections of blocks of varying sizes, each possibly internally sparse. Using our compiler and g-BCSR, we make it easy to develop new certifiers and analyze their utility across diverse DNNs. Despite its flexibility, the compiler achieves performance comparable to hand-optimized implementations.

LGOct 25, 2024
Robust Thompson Sampling Algorithms Against Reward Poisoning Attacks

Yinglun Xu, Zhiwei Wang, Gagandeep Singh

Thompson sampling is one of the most popular learning algorithms for online sequential decision-making problems and has rich real-world applications. However, current Thompson sampling algorithms are limited by the assumption that the rewards received are uncorrupted, which may not be true in real-world applications where adversarial reward poisoning exists. To make Thompson sampling more reliable, we want to make it robust against adversarial reward poisoning. The main challenge is that one can no longer compute the actual posteriors for the true reward, as the agent can only observe the rewards after corruption. In this work, we solve this problem by computing pseudo-posteriors that are less likely to be manipulated by the attack. We propose robust algorithms based on Thompson sampling for the popular stochastic and contextual linear bandit settings in both cases where the agent is aware or unaware of the budget of the attacker. We theoretically show that our algorithms guarantee near-optimal regret under any attack strategy.

AIFeb 24, 2024
Certifying Knowledge Comprehension in LLMs

Isha Chaudhary, Vedaant V. Jain, Gagandeep Singh

Large Language Models (LLMs) are increasingly deployed in safety-critical systems where they provide answers based on in-context information derived from knowledge bases. As LLMs are increasingly envisioned as superhuman agents, their proficiency in knowledge comprehension-extracting relevant information and reasoning over it to answer questions, a key facet of human intelligence-becomes crucial. However, existing evaluations of LLMs on knowledge comprehension are typically conducted on small test sets, but these datasets represent only a tiny fraction of the vast number of possible queries. Simple empirical evaluations on these limited test sets raises concerns about the reliability and generalizability of the results. In this work, we introduce the first specification and certification framework for knowledge comprehension in LLMs, providing formal probabilistic guarantees for reliability. Instead of a fixed dataset, we design novel specifications that mathematically represent prohibitively large probability distributions of knowledge comprehension prompts with natural noise, using knowledge graphs. From these specifications, we generate quantitative certificates that offer high-confidence, tight bounds on the probability that a given LLM correctly answers any question drawn from the specification distribution. We apply our framework to certify SOTA LLMs in two domains: precision medicine and general question-answering. Our results reveal previously unrecognized vulnerabilities in SOTA LLMs due to natural noise in the prompts. Additionally, we establish performance hierarchies with formal guarantees among the SOTA LLMs, particularly in the context of precision medicine question-answering.

LGFeb 15, 2024
Universal Black-Box Reward Poisoning Attack against Offline Reinforcement Learning

Yinglun Xu, Rohan Gumaste, Gagandeep Singh

We study the problem of universal black-boxed reward poisoning attacks against general offline reinforcement learning with deep neural networks. We consider a black-box threat model where the attacker is entirely oblivious to the learning algorithm, and its budget is limited by constraining the amount of corruption at each data point and the total perturbation. We require the attack to be universally efficient against any efficient algorithms that might be used by the agent. We propose an attack strategy called the `policy contrast attack.' The idea is to find low- and high-performing policies covered by the dataset and make them appear to be high- and low-performing to the agent, respectively. To the best of our knowledge, we propose the first universal black-box reward poisoning attack in the general offline RL setting. We provide theoretical insights on the attack design and empirically show that our attack is efficient against current state-of-the-art offline RL algorithms in different learning datasets.

LGFeb 9, 2024
RAMP: Boosting Adversarial Robustness Against Multiple $l_p$ Perturbations for Universal Robustness

Enyi Jiang, Gagandeep Singh

Most existing works focus on improving robustness against adversarial attacks bounded by a single $l_p$ norm using adversarial training (AT). However, these AT models' multiple-norm robustness (union accuracy) is still low, which is crucial since in the real-world an adversary is not necessarily bounded by a single norm. The tradeoffs among robustness against multiple $l_p$ perturbations and accuracy/robustness make obtaining good union and clean accuracy challenging. We design a logit pairing loss to improve the union accuracy by analyzing the tradeoffs from the lens of distribution shifts. We connect natural training (NT) with AT via gradient projection, to incorporate useful information from NT into AT, where we empirically and theoretically show it moderates the accuracy/robustness tradeoff. We propose a novel training framework \textbf{RAMP}, to boost the robustness against multiple $l_p$ perturbations. \textbf{RAMP} can be easily adapted for robust fine-tuning and full AT. For robust fine-tuning, \textbf{RAMP} obtains a union accuracy up to $53.3\%$ on CIFAR-10, and $29.1\%$ on ImageNet. For training from scratch, \textbf{RAMP} achieves a union accuracy of $44.6\%$ and good clean accuracy of $81.2\%$ on ResNet-18 against AutoAttack on CIFAR-10. Beyond multi-norm robustness \textbf{RAMP}-trained models achieve superior \textit{universal robustness}, effectively generalizing against a range of unseen adversaries and natural corruptions.

SDMar 9
Unsupervised Domain Adaptation for Audio Deepfake Detection with Modular Statistical Transformations

Urawee Thani, Gagandeep Singh, Priyanka Singh

Audio deepfake detection systems trained on one dataset often fail when deployed on data from different sources due to distributional shifts in recording conditions, synthesis methods, and acoustic environments. We present a modular pipeline for unsupervised domain adaptation that combines pre-trained Wav2Vec 2.0 embeddings with statistical transformations to improve cross-domain generalization without requiring labeled target data. Our approach applies power transformation for feature normalization, ANOVA-based feature selection, joint PCA for domain-agnostic dimensionality reduction, and CORAL alignment to match source and target covariance structures before classification via logistic regression. We evaluate on two cross-domain transfer scenarios: ASVspoof 2019 LA to Fake-or-Real (FoR) and FoR to ASVspoof, achieving 62.7--63.6\% accuracy with balanced performance across real and fake classes. Systematic ablation experiments reveal that feature selection (+3.5%) and CORAL alignment (+3.2%) provide the largest individual contributions, with the complete pipeline improving accuracy by 10.7% over baseline. While performance is modest compared to within-domain detection (94-96%), our pipeline offers transparency and modularity, making it suitable for deployment scenarios requiring interpretable decisions.

CVFeb 16
D-SECURE: Dual-Source Evidence Combination for Unified Reasoning in Misinformation Detection

Gagandeep Singh, Samudi Amarasinghe, Priyanka Singh

Multimodal misinformation increasingly mixes realistic im-age edits with fluent but misleading text, producing persuasive posts that are difficult to verify. Existing systems usually rely on a single evidence source. Content-based detectors identify local inconsistencies within an image and its caption but cannot determine global factual truth. Retrieval-based fact-checkers reason over external evidence but treat inputs as coarse claims and often miss subtle visual or textual manipulations. This separation creates failure cases where internally consistent fabrications bypass manipulation detectors and fact-checkers verify claims that contain pixel-level or token-level corruption. We present D-SECURE, a framework that combines internal manipulation detection with external evidence-based reasoning for news-style posts. D-SECURE integrates the HAMMER manipulation detector with the DEFAME retrieval pipeline. DEFAME performs broad verification, and HAMMER analyses residual or uncertain cases that may contain fine-grained edits. Experiments on DGM4 and ClaimReview samples highlight the complementary strengths of both systems and motivate their fusion. We provide a unified, explainable report that incorporates manipulation cues and external evidence.