Namhoon Kim

Namhoon Kim, Narges Moeini, Justin Romberg et al.

Volume denoising is a foundational problem in computational imaging, as many 3D imaging inverse problems face high levels of measurement noise. Inspired by the strong 2D image denoising properties of Field of Junctions (ICCV 2021), we propose a novel, fully volumetric 3D Field of Junctions (3D FoJ) representation that optimizes a junction of 3D wedges that best explain each 3D patch of a full volume, while encouraging consistency between overlapping patches. In addition to direct volume denoising, we leverage our 3D FoJ representation as a structural prior that: (i) requires no training data, and thus precludes the risk of hallucination, (ii) preserves and enhances sharp edge and corner structures in 3D, even under low signal to noise ratio (SNR), and (iii) can be used as a drop-in denoising representation via projected or proximal gradient descent for any volumetric inverse problem with low SNR. We demonstrate successful volume reconstruction and denoising with 3D FoJ across three diverse 3D imaging tasks with low-SNR measurements: low-dose X-ray computed tomography (CT), cryogenic electron tomography (cryo-ET), and denoising point clouds such as those from lidar in adverse weather. Across these challenging low-SNR volumetric imaging problems, 3D FoJ outperforms a mixture of classical and neural methods.

Namhoon Kim, Ashwin Pananjady, Amir Pourmorteza et al.

Background: Perfusion computed tomography (CT) images the dynamics of a contrast agent through the body over time, and is one of the highest X-ray dose scans in medical imaging. Recently, a theoretically justified reconstruction algorithm based on a monotone variational inequality (VI) was proposed for single material polychromatic photon-counting CT, and showed promising early results at low-dose imaging. Purpose: We adapt this reconstruction algorithm for perfusion CT, to reconstruct the concentration map of the contrast agent while the static background tissue is assumed known; we call our method VI-PRISM (VI-based PeRfusion Imaging and Single Material reconstruction). We evaluate its potential for dose-reduced perfusion CT, using a digital phantom with water and iodine of varying concentration. Methods: Simulated iodine concentrations range from 0.05 to 2.5 mg/ml. The simulated X-ray source emits photons up to 100 keV, with average intensity ranging from $10^5$ down to $10^2$ photons per detector element. The number of tomographic projections was varied from 984 down to 8 to characterize the tradeoff in photon allocation between views and intensity. Results: We compare VI-PRISM against filtered back-projection (FBP), and find that VI-PRISM recovers iodine concentration with error below 0.4 mg/ml at all source intensity levels tested. Even with a dose reduction between 10x and 100x compared to FBP, VI-PRISM exhibits reconstruction quality on par with FBP. Conclusion: Across all photon budgets and angular sampling densities tested, VI-PRISM achieved consistently lower RMSE, reduced noise, and higher SNR compared to filtered back-projection. Even in extremely photon-limited and sparsely sampled regimes, VI-PRISM recovered iodine concentrations with errors below 0.4 mg/ml, showing that VI-PRISM can support accurate and dose-efficient perfusion imaging in photon-counting CT.