Nicolas Courty

Quang Huy Tran, Hicham Janati, Nicolas Courty et al. · harvard, mit

Optimal transport (OT) compares probability distributions by computing a meaningful alignment between their samples. CO-optimal transport (COOT) takes this comparison further by inferring an alignment between features as well. While this approach leads to better alignments and generalizes both OT and Gromov-Wasserstein distances, we provide a theoretical result showing that it is sensitive to outliers that are omnipresent in real-world data. This prompts us to propose unbalanced COOT for which we provably show its robustness to noise in the compared datasets. To the best of our knowledge, this is the first such result for OT methods in incomparable spaces. With this result in hand, we provide empirical evidence of this robustness for the challenging tasks of heterogeneous domain adaptation with and without varying proportions of classes and simultaneous alignment of samples and features across single-cell measurements.

Björn Michele, Alexandre Boulch, Tuan-Hung Vu et al.

We tackle the challenging problem of source-free unsupervised domain adaptation (SFUDA) for 3D semantic segmentation. It amounts to performing domain adaptation on an unlabeled target domain without any access to source data; the available information is a model trained to achieve good performance on the source domain. A common issue with existing SFUDA approaches is that performance degrades after some training time, which is a by product of an under-constrained and ill-posed problem. We discuss two strategies to alleviate this issue. First, we propose a sensible way to regularize the learning problem. Second, we introduce a novel criterion based on agreement with a reference model. It is used (1) to stop the training when appropriate and (2) as validator to select hyperparameters without any knowledge on the target domain. Our contributions are easy to implement and readily amenable for all SFUDA methods, ensuring stable improvements over all baselines. We validate our findings on various 3D lidar settings, achieving state-of-the-art performance. The project repository (with code) is: github.com/valeoai/TTYD.

Clément Bonet, Paul Berg, Nicolas Courty et al.

Many variants of the Wasserstein distance have been introduced to reduce its original computational burden. In particular the Sliced-Wasserstein distance (SW), which leverages one-dimensional projections for which a closed-form solution of the Wasserstein distance is available, has received a lot of interest. Yet, it is restricted to data living in Euclidean spaces, while the Wasserstein distance has been studied and used recently on manifolds. We focus more specifically on the sphere, for which we define a novel SW discrepancy, which we call spherical Sliced-Wasserstein, making a first step towards defining SW discrepancies on manifolds. Our construction is notably based on closed-form solutions of the Wasserstein distance on the circle, together with a new spherical Radon transform. Along with efficient algorithms and the corresponding implementations, we illustrate its properties in several machine learning use cases where spherical representations of data are at stake: sampling on the sphere, density estimation on real earth data or hyperspherical auto-encoders.

Cédric Vincent-Cuaz, Rémi Flamary, Marco Corneli et al.

Current Graph Neural Networks (GNN) architectures generally rely on two important components: node features embedding through message passing, and aggregation with a specialized form of pooling. The structural (or topological) information is implicitly taken into account in these two steps. We propose in this work a novel point of view, which places distances to some learnable graph templates at the core of the graph representation. This distance embedding is constructed thanks to an optimal transport distance: the Fused Gromov-Wasserstein (FGW) distance, which encodes simultaneously feature and structure dissimilarities by solving a soft graph-matching problem. We postulate that the vector of FGW distances to a set of template graphs has a strong discriminative power, which is then fed to a non-linear classifier for final predictions. Distance embedding can be seen as a new layer, and can leverage on existing message passing techniques to promote sensible feature representations. Interestingly enough, in our work the optimal set of template graphs is also learnt in an end-to-end fashion by differentiating through this layer. After describing the corresponding learning procedure, we empirically validate our claim on several synthetic and real life graph classification datasets, where our method is competitive or surpasses kernel and GNN state-of-the-art approaches. We complete our experiments by an ablation study and a sensitivity analysis to parameters.

Björn Michele, Alexandre Boulch, Gilles Puy et al.

Learning models on one labeled dataset that generalize well on another domain is a difficult task, as several shifts might happen between the data domains. This is notably the case for lidar data, for which models can exhibit large performance discrepancies due for instance to different lidar patterns or changes in acquisition conditions. This paper addresses the corresponding Unsupervised Domain Adaptation (UDA) task for semantic segmentation. To mitigate this problem, we introduce an unsupervised auxiliary task of learning an implicit underlying surface representation simultaneously on source and target data. As both domains share the same latent representation, the model is forced to accommodate discrepancies between the two sources of data. This novel strategy differs from classical minimization of statistical divergences or lidar-specific domain adaptation techniques. Our experiments demonstrate that our method achieves a better performance than the current state of the art, both in real-to-real and synthetic-to-real scenarios.

Clément Bonet, Benoît Malézieux, Alain Rakotomamonjy et al.

When dealing with electro or magnetoencephalography records, many supervised prediction tasks are solved by working with covariance matrices to summarize the signals. Learning with these matrices requires using Riemanian geometry to account for their structure. In this paper, we propose a new method to deal with distributions of covariance matrices and demonstrate its computational efficiency on M/EEG multivariate time series. More specifically, we define a Sliced-Wasserstein distance between measures of symmetric positive definite matrices that comes with strong theoretical guarantees. Then, we take advantage of its properties and kernel methods to apply this distance to brain-age prediction from MEG data and compare it to state-of-the-art algorithms based on Riemannian geometry. Finally, we show that it is an efficient surrogate to the Wasserstein distance in domain adaptation for Brain Computer Interface applications.

Clément Bonet, Laetitia Chapel, Lucas Drumetz et al.

It has been shown beneficial for many types of data which present an underlying hierarchical structure to be embedded in hyperbolic spaces. Consequently, many tools of machine learning were extended to such spaces, but only few discrepancies to compare probability distributions defined over those spaces exist. Among the possible candidates, optimal transport distances are well defined on such Riemannian manifolds and enjoy strong theoretical properties, but suffer from high computational cost. On Euclidean spaces, sliced-Wasserstein distances, which leverage a closed-form of the Wasserstein distance in one dimension, are more computationally efficient, but are not readily available on hyperbolic spaces. In this work, we propose to derive novel hyperbolic sliced-Wasserstein discrepancies. These constructions use projections on the underlying geodesics either along horospheres or geodesics. We study and compare them on different tasks where hyperbolic representations are relevant, such as sampling or image classification.

François Painblanc, Laetitia Chapel, Nicolas Courty et al.

While large volumes of unlabeled data are usually available, associated labels are often scarce. The unsupervised domain adaptation problem aims at exploiting labels from a source domain to classify data from a related, yet different, target domain. When time series are at stake, new difficulties arise as temporal shifts may appear in addition to the standard feature distribution shift. In this paper, we introduce the Match-And-Deform (MAD) approach that aims at finding correspondences between the source and target time series while allowing temporal distortions. The associated optimization problem simultaneously aligns the series thanks to an optimal transport loss and the time stamps through dynamic time warping. When embedded into a deep neural network, MAD helps learning new representations of time series that both align the domains and maximize the discriminative power of the network. Empirical studies on benchmark datasets and remote sensing data demonstrate that MAD makes meaningful sample-to-sample pairing and time shift estimation, reaching similar or better classification performance than state-of-the-art deep time series domain adaptation strategies.

Clément Bonet, Kimia Nadjahi, Thibault Séjourné et al.

Optimal transport (OT) is a powerful framework to compare probability measures, a fundamental task in many statistical and machine learning problems. Substantial advances have been made in designing OT variants which are either computationally and statistically more efficient or robust. Among them, sliced OT distances have been extensively used to mitigate optimal transport's cubic algorithmic complexity and curse of dimensionality. In parallel, unbalanced OT was designed to allow comparisons of more general positive measures, while being more robust to outliers. In this paper, we bridge the gap between those two concepts and develop a general framework for efficiently comparing positive measures. We notably formulate two different versions of sliced unbalanced OT, and study the associated topology and statistical properties. We then develop a GPU-friendly Frank-Wolfe like algorithm to compute the corresponding loss functions, and show that the resulting methodology is modular as it encompasses and extends prior related work. We finally conduct an empirical analysis of our loss functions and methodology on both synthetic and real datasets, to illustrate their computational efficiency, relevance and applicability to real-world scenarios including geophysical data.

Guillaume Morel, Lucas Drumetz, Simon Benaïchouche et al.

Normalizing Flows (NF) are powerful likelihood-based generative models that are able to trade off between expressivity and tractability to model complex densities. A now well established research avenue leverages optimal transport (OT) and looks for Monge maps, i.e. models with minimal effort between the source and target distributions. This paper introduces a method based on Brenier's polar factorization theorem to transform any trained NF into a more OT-efficient version without changing the final density. We do so by learning a rearrangement of the source (Gaussian) distribution that minimizes the OT cost between the source and the final density. We further constrain the path leading to the estimated Monge map to lie on a geodesic in the space of volume-preserving diffeomorphisms thanks to Euler's equations. The proposed method leads to smooth flows with reduced OT cost for several existing models without affecting the model performance.

Guillaume Mahey, Laetitia Chapel, Gilles Gasso et al.

Wasserstein distance (WD) and the associated optimal transport plan have been proven useful in many applications where probability measures are at stake. In this paper, we propose a new proxy of the squared WD, coined min-SWGG, that is based on the transport map induced by an optimal one-dimensional projection of the two input distributions. We draw connections between min-SWGG and Wasserstein generalized geodesics in which the pivot measure is supported on a line. We notably provide a new closed form for the exact Wasserstein distance in the particular case of one of the distributions supported on a line allowing us to derive a fast computational scheme that is amenable to gradient descent optimization. We show that min-SWGG is an upper bound of WD and that it has a complexity similar to as Sliced-Wasserstein, with the additional feature of providing an associated transport plan. We also investigate some theoretical properties such as metricity, weak convergence, computational and topological properties. Empirical evidences support the benefits of min-SWGG in various contexts, from gradient flows, shape matching and image colorization, among others.

Paul Berg, Minh-Tan Pham, Nicolas Courty

With the current ubiquity of deep learning methods to solve computer vision and remote sensing specific tasks, the need for labelled data is growing constantly. However, in many cases, the annotation process can be long and tedious depending on the expertise needed to perform reliable annotations. In order to alleviate this need for annotations, several self-supervised methods have recently been proposed in the literature. The core principle behind these methods is to learn an image encoder using solely unlabelled data samples. In earth observation, there are opportunities to exploit domain-specific remote sensing image data in order to improve these methods. Specifically, by leveraging the geographical position associated with each image, it is possible to cross reference a location captured from multiple sensors, leading to multiple views of the same locations. In this paper, we briefly review the core principles behind so-called joint-embeddings methods and investigate the usage of multiple remote sensing modalities in self-supervised pre-training. We evaluate the final performance of the resulting encoders on the task of methane source classification.

Hugues Van Assel, Titouan Vayer, Remi Flamary et al.

Regularising the primal formulation of optimal transport (OT) with a strictly convex term leads to enhanced numerical complexity and a denser transport plan. Many formulations impose a global constraint on the transport plan, for instance by relying on entropic regularisation. As it is more expensive to diffuse mass for outlier points compared to central ones, this typically results in a significant imbalance in the way mass is spread across the points. This can be detrimental for some applications where a minimum of smoothing is required per point. To remedy this, we introduce OT with Adaptive RegularIsation (OTARI), a new formulation of OT that imposes constraints on the mass going in or/and out of each point. We then showcase the benefits of this approach for domain adaptation.

Hugues Van Assel, Cédric Vincent-Cuaz, Titouan Vayer et al.

We present a versatile adaptation of existing dimensionality reduction (DR) objectives, enabling the simultaneous reduction of both sample and feature sizes. Correspondances between input and embedding samples are computed through a semi-relaxed Gromov-Wasserstein optimal transport (OT) problem. When the embedding sample size matches that of the input, our model recovers classical popular DR models. When the embedding's dimensionality is unconstrained, we show that the OT plan delivers a competitive hard clustering. We emphasize the importance of intermediate stages that blend DR and clustering for summarizing real data and apply our method to visualize datasets of images.

Salil Parth Tripathi, Bertrand Chapron, Fabrice Collard et al.

While optimal transport (OT) enforces a rigid constraint by requiring two measures to be matched exactly, partial optimal transport relaxes this requirement by allowing mass to remain unmatched through a global budget, scalar rebate, or uniform rejection rule. However, many applications call for more structured, pointwise rejection mechanisms, where the decision to leave mass unmatched depends on side-specific reliability, support geometry, or external information about which components should participate in the comparison. We introduce \emph{intent-controlled partial optimal transport} (IC-POT), a targeted generalization of partial transport that replaces the global rejection paradigm with pointwise rejection costs over both measures. We show that the resulting optimization problem admits a dual interpretation in terms of local acceptance thresholds and can be solved by recasting it as a balanced Kantorovich OT problem on an augmented support. Beyond theoretical analysis, we demonstrate the practical relevance of IC-POT in settings where rejection is driven by side information. In positive-unlabeled learning and open-partial domain adaptation, incorporating pointwise rejection rules that encode statistical structure improves fixed baseline pipelines. Finally, we motivate the use of IC-POT with a geophysical practical case: multi-modal satellite ocean measurements, for which physical and sensors priors naturally inform the rejection mechanism and define the retrieved comparable signal information.

Pierre Houédry, Iskander Legheraba, Léo Buecher et al.

Optimal transport provides a powerful framework for comparing measures while respecting the geometry of their support, but comes with an expensive computational cost, hindering its potential application to real world use cases. On manifolds, convolutional algorithms based on the heat kernel have been proposed to alleviate this cost, but their theoretical properties remain largely unexplored. We establish that the heat kernel cost converges to the optimal transport cost as time vanishes in the balanced and unbalanced cases. In the specific case of the 2-sphere $\mathbb{S}^2$, we ensure that the associated Sinkhorn divergences retains the desirable geometric and analytic properties of classical optimal transport discrepancies. Moreover, we leverage the harmonic structure of the sphere to derive a fast Sinkhorn algorithm, requiring only $\mathcal{O}(n)$ memory and $\mathcal{O}(n^{3/2})$ time per iteration, with fully dense GPU-friendly operations. We validate its computational efficiency on synthetic data, and discuss its potential use in the evaluation of global climate models, providing both spatial and seasonal insights into models performances.

Björn Michele, Alexandre Boulch, Gilles Puy et al.

Semantic segmentation networks trained under full supervision for one type of lidar fail to generalize to unseen lidars without intervention. To reduce the performance gap under domain shifts, a recent trend is to leverage vision foundation models (VFMs) providing robust features across domains. In this work, we conduct an exhaustive study to identify recipes for exploiting VFMs in unsupervised domain adaptation for semantic segmentation of lidar point clouds. Building upon unsupervised image-to-lidar knowledge distillation, our study reveals that: (1) the architecture of the lidar backbone is key to maximize the generalization performance on a target domain; (2) it is possible to pretrain a single backbone once and for all, and use it to address many domain shifts; (3) best results are obtained by keeping the pretrained backbone frozen and training an MLP head for semantic segmentation. The resulting pipeline achieves state-of-the-art results in four widely-recognized and challenging settings. The code will be available at: https://github.com/valeoai/muddos.

Alain Rakotomamonjy, Rémi Flamary, Gilles Gasso et al.

We address the problem of unsupervised domain adaptation under the setting of generalized target shift (joint class-conditional and label shifts). For this framework, we theoretically show that, for good generalization, it is necessary to learn a latent representation in which both marginals and class-conditional distributions are aligned across domains. For this sake, we propose a learning problem that minimizes importance weighted loss in the source domain and a Wasserstein distance between weighted marginals. For a proper weighting, we provide an estimator of target label proportion by blending mixture estimation and optimal matching by optimal transport. This estimation comes with theoretical guarantees of correctness under mild assumptions. Our experimental results show that our method performs better on average than competitors across a range domain adaptation problems including \emph{digits},\emph{VisDA} and \emph{Office}. Code for this paper is available at \url{https://github.com/arakotom/mars_domain_adaptation}.

Marc Rußwurm, Nicolas Courty, Rémi Emonet et al.

Remote sensing satellites capture the cyclic dynamics of our Planet in regular time intervals recorded in satellite time series data. End-to-end trained deep learning models use this time series data to make predictions at a large scale, for instance, to produce up-to-date crop cover maps. Most time series classification approaches focus on the accuracy of predictions. However, the earliness of the prediction is also of great importance since coming to an early decision can make a crucial difference in time-sensitive applications. In this work, we present an End-to-End Learned Early Classification of Time Series (ELECTS) model that estimates a classification score and a probability of whether sufficient data has been observed to come to an early and still accurate decision. ELECTS is modular: any deep time series classification model can adopt the ELECTS conceptual idea by adding a second prediction head that outputs a probability of stopping the classification. The ELECTS loss function then optimizes the overall model on a balanced objective of earliness and accuracy. Our experiments on four crop classification datasets from Europe and Africa show that ELECTS allows reaching state-of-the-art accuracy while reducing the quantity of data massively to be downloaded, stored, and processed. The source code is available at https://github.com/marccoru/elects.

Clément Bonet, Lucas Drumetz, Nicolas Courty

While many Machine Learning methods were developed or transposed on Riemannian manifolds to tackle data with known non Euclidean geometry, Optimal Transport (OT) methods on such spaces have not received much attention. The main OT tool on these spaces is the Wasserstein distance which suffers from a heavy computational burden. On Euclidean spaces, a popular alternative is the Sliced-Wasserstein distance, which leverages a closed-form solution of the Wasserstein distance in one dimension, but which is not readily available on manifolds. In this work, we derive general constructions of Sliced-Wasserstein distances on Cartan-Hadamard manifolds, Riemannian manifolds with non-positive curvature, which include among others Hyperbolic spaces or the space of Symmetric Positive Definite matrices. Then, we propose different applications. Additionally, we derive non-parametric schemes to minimize these new distances by approximating their Wasserstein gradient flows.

Hugues Van Assel, Cédric Vincent-Cuaz, Nicolas Courty et al.

Unsupervised learning aims to capture the underlying structure of potentially large and high-dimensional datasets. Traditionally, this involves using dimensionality reduction (DR) methods to project data onto lower-dimensional spaces or organizing points into meaningful clusters (clustering). In this work, we revisit these approaches under the lens of optimal transport and exhibit relationships with the Gromov-Wasserstein problem. This unveils a new general framework, called distributional reduction, that recovers DR and clustering as special cases and allows addressing them jointly within a single optimization problem. We empirically demonstrate its relevance to the identification of low-dimensional prototypes representing data at different scales, across multiple image and genomic datasets.

Clément Bonet, Elsa Cazelles, Lucas Drumetz et al.

The Busemann function has recently found much interest in a variety of geometric machine learning problems, as it naturally defines projections onto geodesic rays of Riemannian manifolds and generalizes the notion of hyperplanes. As several sources of data can be conveniently modeled as probability distributions, it is natural to study this function in the Wasserstein space, which carries a rich formal Riemannian structure induced by Optimal Transport metrics. In this work, we investigate the existence and computation of Busemann functions in Wasserstein space, which admits geodesic rays. We establish closed-form expressions in two important cases: one-dimensional distributions and Gaussian measures. These results enable explicit projection schemes for probability distributions on $\mathbb{R}$, which in turn allow us to define novel Sliced-Wasserstein distances over Gaussian mixtures and labeled datasets. We demonstrate the efficiency of those original schemes on synthetic datasets as well as transfer learning problems.

Pierre Houedry, Nicolas Courty, Florestan Martin-Baillon et al.

Trees and the associated shortest-path tree metrics provide a powerful framework for representing hierarchical and combinatorial structures in data. Given an arbitrary metric space, its deviation from a tree metric can be quantified by Gromov's $δ$-hyperbolicity. Nonetheless, designing algorithms that bridge an arbitrary metric to its closest tree metric is still a vivid subject of interest, as most common approaches are either heuristical and lack guarantees, or perform moderately well. In this work, we introduce a novel differentiable optimization framework, coined DeltaZero, that solves this problem. Our method leverages a smooth surrogate for Gromov's $δ$-hyperbolicity which enables a gradient-based optimization, with a tractable complexity. The corresponding optimization procedure is derived from a problem with better worst case guarantees than existing bounds, and is justified statistically. Experiments on synthetic and real-world datasets demonstrate that our method consistently achieves state-of-the-art distortion.

Hugues Van Assel, Titouan Vayer, Rémi Flamary et al.

Many approaches in machine learning rely on a weighted graph to encode the similarities between samples in a dataset. Entropic affinities (EAs), which are notably used in the popular Dimensionality Reduction (DR) algorithm t-SNE, are particular instances of such graphs. To ensure robustness to heterogeneous sampling densities, EAs assign a kernel bandwidth parameter to every sample in such a way that the entropy of each row in the affinity matrix is kept constant at a specific value, whose exponential is known as perplexity. EAs are inherently asymmetric and row-wise stochastic, but they are used in DR approaches after undergoing heuristic symmetrization methods that violate both the row-wise constant entropy and stochasticity properties. In this work, we uncover a novel characterization of EA as an optimal transport problem, allowing a natural symmetrization that can be computed efficiently using dual ascent. The corresponding novel affinity matrix derives advantages from symmetric doubly stochastic normalization in terms of clustering performance, while also effectively controlling the entropy of each row thus making it particularly robust to varying noise levels. Following, we present a new DR algorithm, SNEkhorn, that leverages this new affinity matrix. We show its clear superiority to state-of-the-art approaches with several indicators on both synthetic and real-world datasets.

Fang Wu, Nicolas Courty, Shuting Jin et al.

Training data are usually limited or heterogeneous in many chemical and biological applications. Existing machine learning models for chemistry and materials science fail to consider generalizing beyond training domains. In this article, we develop a novel optimal transport-based algorithm termed MROT to enhance their generalization capability for molecular regression problems. MROT learns a continuous label of the data by measuring a new metric of domain distances and a posterior variance regularization over the transport plan to bridge the chemical domain gap. Among downstream tasks, we consider basic chemical regression tasks in unsupervised and semi-supervised settings, including chemical property prediction and materials adsorption selection. Extensive experiments show that MROT significantly outperforms state-of-the-art models, showing promising potential in accelerating the discovery of new substances with desired properties.

Clément Bonet, Nicolas Courty, François Septier et al.

Minimizing functionals in the space of probability distributions can be done with Wasserstein gradient flows. To solve them numerically, a possible approach is to rely on the Jordan-Kinderlehrer-Otto (JKO) scheme which is analogous to the proximal scheme in Euclidean spaces. However, it requires solving a nested optimization problem at each iteration, and is known for its computational challenges, especially in high dimension. To alleviate it, very recent works propose to approximate the JKO scheme leveraging Brenier's theorem, and using gradients of Input Convex Neural Networks to parameterize the density (JKO-ICNN). However, this method comes with a high computational cost and stability issues. Instead, this work proposes to use gradient flows in the space of probability measures endowed with the sliced-Wasserstein (SW) distance. We argue that this method is more flexible than JKO-ICNN, since SW enjoys a closed-form differentiable approximation. Thus, the density at each step can be parameterized by any generative model which alleviates the computational burden and makes it tractable in higher dimensions.

Clément Bonet, Nicolas Courty, François Septier et al.

In the context of optimal transport methods, the subspace detour approach was recently presented by Muzellec and Cuturi (2019). It consists in building a nearly optimal transport plan in the measures space from an optimal transport plan in a wisely chosen subspace, onto which the original measures are projected. The contribution of this paper is to extend this category of methods to the Gromov-Wasserstein problem, which is a particular type of transport distance involving the inner geometry of the compared distributions. After deriving the associated formalism and properties, we also discuss a specific cost for which we can show connections with the Knothe-Rosenblatt rearrangement. We finally give an experimental illustration on a shape matching problem.

Cédric Vincent-Cuaz, Rémi Flamary, Marco Corneli et al.

Comparing structured objects such as graphs is a fundamental operation involved in many learning tasks. To this end, the Gromov-Wasserstein (GW) distance, based on Optimal Transport (OT), has proven to be successful in handling the specific nature of the associated objects. More specifically, through the nodes connectivity relations, GW operates on graphs, seen as probability measures over specific spaces. At the core of OT is the idea of conservation of mass, which imposes a coupling between all the nodes from the two considered graphs. We argue in this paper that this property can be detrimental for tasks such as graph dictionary or partition learning, and we relax it by proposing a new semi-relaxed Gromov-Wasserstein divergence. Aside from immediate computational benefits, we discuss its properties, and show that it can lead to an efficient graph dictionary learning algorithm. We empirically demonstrate its relevance for complex tasks on graphs such as partitioning, clustering and completion.

Quang Huy Tran, Hicham Janati, Ievgen Redko et al.

Optimal transport (OT) theory underlies many emerging machine learning (ML) methods nowadays solving a wide range of tasks such as generative modeling, transfer learning and information retrieval. These latter works, however, usually build upon a traditional OT setup with two distributions, while leaving a more general multi-marginal OT formulation somewhat unexplored. In this paper, we study the multi-marginal OT (MMOT) problem and unify several popular OT methods under its umbrella by promoting structural information on the coupling. We show that incorporating such structural information into MMOT results in an instance of a different of convex (DC) programming problem allowing us to solve it numerically. Despite high computational cost of the latter procedure, the solutions provided by DC optimization are usually as qualitative as those obtained using currently employed optimization schemes.

Kilian Fatras, Thibault Séjourné, Nicolas Courty et al.

Optimal transport distances have found many applications in machine learning for their capacity to compare non-parametric probability distributions. Yet their algorithmic complexity generally prevents their direct use on large scale datasets. Among the possible strategies to alleviate this issue, practitioners can rely on computing estimates of these distances over subsets of data, {\em i.e.} minibatches. While computationally appealing, we highlight in this paper some limits of this strategy, arguing it can lead to undesirable smoothing effects. As an alternative, we suggest that the same minibatch strategy coupled with unbalanced optimal transport can yield more robust behavior. We discuss the associated theoretical properties, such as unbiased estimators, existence of gradients and concentration bounds. Our experimental study shows that in challenging problems associated to domain adaptation, the use of unbalanced optimal transport leads to significantly better results, competing with or surpassing recent baselines.

Julien Lacombe, Julie Digne, Nicolas Courty et al.

Optimal transport is a notoriously difficult problem to solve numerically, with current approaches often remaining intractable for very large scale applications such as those encountered in machine learning. Wasserstein barycenters -- the problem of finding measures in-between given input measures in the optimal transport sense -- is even more computationally demanding as it requires to solve an optimization problem involving optimal transport distances. By training a deep convolutional neural network, we improve by a factor of 60 the computational speed of Wasserstein barycenters over the fastest state-of-the-art approach on the GPU, resulting in milliseconds computational times on $512\times512$ regular grids. We show that our network, trained on Wasserstein barycenters of pairs of measures, generalizes well to the problem of finding Wasserstein barycenters of more than two measures. We demonstrate the efficiency of our approach for computing barycenters of sketches and transferring colors between multiple images.

Cédric Vincent-Cuaz, Titouan Vayer, Rémi Flamary et al.

Dictionary learning is a key tool for representation learning, that explains the data as linear combination of few basic elements. Yet, this analysis is not amenable in the context of graph learning, as graphs usually belong to different metric spaces. We fill this gap by proposing a new online Graph Dictionary Learning approach, which uses the Gromov Wasserstein divergence for the data fitting term. In our work, graphs are encoded through their nodes' pairwise relations and modeled as convex combination of graph atoms, i.e. dictionary elements, estimated thanks to an online stochastic algorithm, which operates on a dataset of unregistered graphs with potentially different number of nodes. Our approach naturally extends to labeled graphs, and is completed by a novel upper bound that can be used as a fast approximation of Gromov Wasserstein in the embedding space. We provide numerical evidences showing the interest of our approach for unsupervised embedding of graph datasets and for online graph subspace estimation and tracking.

Kilian Fatras, Younes Zine, Szymon Majewski et al.

Optimal transport distances have become a classic tool to compare probability distributions and have found many applications in machine learning. Yet, despite recent algorithmic developments, their complexity prevents their direct use on large scale datasets. To overcome this challenge, a common workaround is to compute these distances on minibatches i.e. to average the outcome of several smaller optimal transport problems. We propose in this paper an extended analysis of this practice, which effects were previously studied in restricted cases. We first consider a large variety of Optimal Transport kernels. We notably argue that the minibatch strategy comes with appealing properties such as unbiased estimators, gradients and a concentration bound around the expectation, but also with limits: the minibatch OT is not a distance. To recover some of the lost distance axioms, we introduce a debiased minibatch OT function and study its statistical and optimisation properties. Along with this theoretical analysis, we also conduct empirical experiments on gradient flows, generative adversarial networks (GANs) or color transfer that highlight the practical interest of this strategy.

Diego Marcos, Ruth Fong, Sylvain Lobry et al.

Convolutional neural networks (CNN) are known to learn an image representation that captures concepts relevant to the task, but do so in an implicit way that hampers model interpretability. However, one could argue that such a representation is hidden in the neurons and can be made explicit by teaching the model to recognize semantically interpretable attributes that are present in the scene. We call such an intermediate layer a \emph{semantic bottleneck}. Once the attributes are learned, they can be re-combined to reach the final decision and provide both an accurate prediction and an explicit reasoning behind the CNN decision. In this paper, we look into semantic bottlenecks that capture context: we want attributes to be in groups of a few meaningful elements and participate jointly to the final decision. We use a two-layer semantic bottleneck that gathers attributes into interpretable, sparse groups, allowing them contribute differently to the final output depending on the context. We test our contextual semantic interpretable bottleneck (CSIB) on the task of landscape scenicness estimation and train the semantic interpretable bottleneck using an auxiliary database (SUN Attributes). Our model yields in predictions as accurate as a non-interpretable baseline when applied to a real-world test set of Flickr images, all while providing clear and interpretable explanations for each prediction.

Xuhong Li, Yves Grandvalet, Rémi Flamary et al.

Learning generic representations with deep networks requires massive training samples and significant computer resources. To learn a new specific task, an important issue is to transfer the generic teacher's representation to a student network. In this paper, we propose to use a metric between representations that is based on a functional view of neurons. We use optimal transport to quantify the match between two representations, yielding a distance that embeds some invariances inherent to the representation of deep networks. This distance defines a regularizer promoting the similarity of the student's representation with that of the teacher. Our approach can be used in any learning context where representation transfer is applicable. We experiment here on two standard settings: inductive transfer learning, where the teacher's representation is transferred to a student network of same architecture for a new related task, and knowledge distillation, where the teacher's representation is transferred to a student of simpler architecture for the same task (model compression). Our approach also lends itself to solving new learning problems; we demonstrate this by showing how to directly transfer the teacher's representation to a simpler architecture student for a new related task.

Claire Voreiter, Jean-Christophe Burnel, Pierre Lassalle et al.

In the field of remote sensing and more specifically in Earth Observation, new data are available every day, coming from different sensors. Leveraging on those data in classification tasks comes at the price of intense labelling tasks that are not realistic in operational settings. While domain adaptation could be useful to counterbalance this problem, most of the usual methods assume that the data to adapt are comparable (they belong to the same metric space), which is not the case when multiple sensors are at stake. Heterogeneous domain adaptation methods are a particular solution to this problem. We present a novel method to deal with such cases, based on a modified cycleGAN version that incorporates classification losses and a metric space alignment term. We demonstrate its power on a land use classification tasks, with images from both Google Earth and Sentinel-2.

Titouan Vayer, Romain Tavenard, Laetitia Chapel et al.

Multivariate time series are ubiquitous objects in signal processing. Measuring a distance or similarity between two such objects is of prime interest in a variety of applications, including machine learning, but can be very difficult as soon as the temporal dynamics and the representation of the time series, {\em i.e.} the nature of the observed quantities, differ from one another. In this work, we propose a novel distance accounting both feature space and temporal variabilities by learning a latent global transformation of the feature space together with a temporal alignment, cast as a joint optimization problem. The versatility of our framework allows for several variants depending on the invariance class at stake. Among other contributions, we define a differentiable loss for time series and present two algorithms for the computation of time series barycenters under this new geometry. We illustrate the interest of our approach on both simulated and real world data and show the robustness of our approach compared to state-of-the-art methods.

Ievgen Redko, Titouan Vayer, Rémi Flamary et al.

Optimal transport (OT) is a powerful geometric and probabilistic tool for finding correspondences and measuring similarity between two distributions. Yet, its original formulation relies on the existence of a cost function between the samples of the two distributions, which makes it impractical when they are supported on different spaces. To circumvent this limitation, we propose a novel OT problem, named COOT for CO-Optimal Transport, that simultaneously optimizes two transport maps between both samples and features, contrary to other approaches that either discard the individual features by focusing on pairwise distances between samples or need to model explicitly the relations between them. We provide a thorough theoretical analysis of our problem, establish its rich connections with other OT-based distances and demonstrate its versatility with two machine learning applications in heterogeneous domain adaptation and co-clustering/data summarization, where COOT leads to performance improvements over the state-of-the-art methods.

Jean-Christophe Burnel, Kilian Fatras, Nicolas Courty

Adversarial examples are a hot topic due to their abilities to fool a classifier's prediction. There are two strategies to create such examples, one uses the attacked classifier's gradients, while the other only requires access to the clas-sifier's prediction. This is particularly appealing when the classifier is not full known (black box model). In this paper, we present a new method which is able to generate natural adversarial examples from the true data following the second paradigm. Based on Generative Adversarial Networks (GANs) [5], it reweights the true data empirical distribution to encourage the classifier to generate ad-versarial examples. We provide a proof of concept of our method by generating adversarial hyperspectral signatures on a remote sensing dataset.

Kilian Fatras, Younes Zine, Rémi Flamary et al.

Optimal transport distances are powerful tools to compare probability distributions and have found many applications in machine learning. Yet their algorithmic complexity prevents their direct use on large scale datasets. To overcome this challenge, practitioners compute these distances on minibatches {\em i.e.} they average the outcome of several smaller optimal transport problems. We propose in this paper an analysis of this practice, which effects are not well understood so far. We notably argue that it is equivalent to an implicit regularization of the original problem, with appealing properties such as unbiased estimators, gradients and a concentration bound around the expectation, but also with defects such as loss of distance property. Along with this theoretical analysis, we also conduct empirical experiments on gradient flows, GANs or color transfer that highlight the practical interest of this strategy.

Titouan Vayer, Rémi Flamary, Romain Tavenard et al.

Recently used in various machine learning contexts, the Gromov-Wasserstein distance (GW) allows for comparing distributions whose supports do not necessarily lie in the same metric space. However, this Optimal Transport (OT) distance requires solving a complex non convex quadratic program which is most of the time very costly both in time and memory. Contrary to GW, the Wasserstein distance (W) enjoys several properties (e.g. duality) that permit large scale optimization. Among those, the solution of W on the real line, that only requires sorting discrete samples in 1D, allows defining the Sliced Wasserstein (SW) distance. This paper proposes a new divergence based on GW akin to SW. We first derive a closed form for GW when dealing with 1D distributions, based on a new result for the related quadratic assignment problem. We then define a novel OT discrepancy that can deal with large scale distributions via a slicing approach and we show how it relates to the GW distance while being $O(n\log(n))$ to compute. We illustrate the behavior of this so called Sliced Gromov-Wasserstein (SGW) discrepancy in experiments where we demonstrate its ability to tackle similar problems as GW while being several order of magnitudes faster to compute.

Kilian Fatras, Bharath Bhushan Damodaran, Sylvain Lobry et al.

Noisy labels often occur in vision datasets, especially when they are obtained from crowdsourcing or Web scraping. We propose a new regularization method, which enables learning robust classifiers in presence of noisy data. To achieve this goal, we propose a new adversarial regularization scheme based on the Wasserstein distance. Using this distance allows taking into account specific relations between classes by leveraging the geometric properties of the labels space. Our Wasserstein Adversarial Regularization (WAR) encodes a selective regularization, which promotes smoothness of the classifier between some classes, while preserving sufficient complexity of the decision boundary between others. We first discuss how and why adversarial regularization can be used in the context of label noise and then show the effectiveness of our method on five datasets corrupted with noisy labels: in both benchmarks and real datasets, WAR outperforms the state-of-the-art competitors.

Titouan Vayer, Laetita Chapel, Rémi Flamary et al.

Optimal transport theory has recently found many applications in machine learning thanks to its capacity for comparing various machine learning objects considered as distributions. The Kantorovitch formulation, leading to the Wasserstein distance, focuses on the features of the elements of the objects but treat them independently, whereas the Gromov-Wasserstein distance focuses only on the relations between the elements, depicting the structure of the object, yet discarding its features. In this paper we propose to extend these distances in order to encode simultaneously both the feature and structure informations, resulting in the Fused Gromov-Wasserstein distance. We develop the mathematical framework for this novel distance, prove its metric and interpolation properties and provide a concentration result for the convergence of finite samples. We also illustrate and interpret its use in various contexts where structured objects are involved.

Bharath Bhushan Damodaran, Rémi Flamary, Viven Seguy et al.

Deep neural networks have established as a powerful tool for large scale supervised classification tasks. The state-of-the-art performances of deep neural networks are conditioned to the availability of large number of accurately labeled samples. In practice, collecting large scale accurately labeled datasets is a challenging and tedious task in most scenarios of remote sensing image analysis, thus cheap surrogate procedures are employed to label the dataset. Training deep neural networks on such datasets with inaccurate labels easily overfits to the noisy training labels and degrades the performance of the classification tasks drastically. To mitigate this effect, we propose an original solution with entropic optimal transportation. It allows to learn in an end-to-end fashion deep neural networks that are, to some extent, robust to inaccurately labeled samples. We empirically demonstrate on several remote sensing datasets, where both scene and pixel-based hyperspectral images are considered for classification. Our method proves to be highly tolerant to significant amounts of label noise and achieves favorable results against state-of-the-art methods.

Titouan Vayer, Laetitia Chapel, Rémi Flamary et al.

This work considers the problem of computing distances between structured objects such as undirected graphs, seen as probability distributions in a specific metric space. We consider a new transportation distance (i.e. that minimizes a total cost of transporting probability masses) that unveils the geometric nature of the structured objects space. Unlike Wasserstein or Gromov-Wasserstein metrics that focus solely and respectively on features (by considering a metric in the feature space) or structure (by seeing structure as a metric space), our new distance exploits jointly both information, and is consequently called Fused Gromov-Wasserstein (FGW). After discussing its properties and computational aspects, we show results on a graph classification task, where our method outperforms both graph kernels and deep graph convolutional networks. Exploiting further on the metric properties of FGW, interesting geometric objects such as Fréchet means or barycenters of graphs are illustrated and discussed in a clustering context.

Bharath Bhushan Damodaran, Benjamin Kellenberger, Rémi Flamary et al.

In computer vision, one is often confronted with problems of domain shifts, which occur when one applies a classifier trained on a source dataset to target data sharing similar characteristics (e.g. same classes), but also different latent data structures (e.g. different acquisition conditions). In such a situation, the model will perform poorly on the new data, since the classifier is specialized to recognize visual cues specific to the source domain. In this work we explore a solution, named DeepJDOT, to tackle this problem: through a measure of discrepancy on joint deep representations/labels based on optimal transport, we not only learn new data representations aligned between the source and target domain, but also simultaneously preserve the discriminative information used by the classifier. We applied DeepJDOT to a series of visual recognition tasks, where it compares favorably against state-of-the-art deep domain adaptation methods.

Ievgen Redko, Nicolas Courty, Rémi Flamary et al.

In this paper, we propose to tackle the problem of reducing discrepancies between multiple domains referred to as multi-source domain adaptation and consider it under the target shift assumption: in all domains we aim to solve a classification problem with the same output classes, but with labels' proportions differing across them. This problem, generally ignored in the vast majority papers on domain adaptation papers, is nevertheless critical in real-world applications, and we theoretically show its impact on the adaptation success. To address this issue, we design a method based on optimal transport, a theory that has been successfully used to tackle adaptation problems in machine learning. Our method performs multi-source adaptation and target shift correction simultaneously by learning the class probabilities of the unlabeled target sample and the coupling allowing to align two (or more) probability distributions. Experiments on both synthetic and real-world data related to satellite image segmentation task show the superiority of the proposed method over the state-of-the-art.

Alain Rakotomamonjy, Abraham Traoré, Maxime Berar et al.

This paper presents a distance-based discriminative framework for learning with probability distributions. Instead of using kernel mean embeddings or generalized radial basis kernels, we introduce embeddings based on dissimilarity of distributions to some reference distributions denoted as templates. Our framework extends the theory of similarity of Balcan et al. (2008) to the population distribution case and we show that, for some learning problems, some dissimilarity on distribution achieves low-error linear decision functions with high probability. Our key result is to prove that the theory also holds for empirical distributions. Algorithmically, the proposed approach consists in computing a mapping based on pairwise dissimilarity where learning a linear decision function is amenable. Our experimental results show that the Wasserstein distance embedding performs better than kernel mean embeddings and computing Wasserstein distance is far more tractable than estimating pairwise Kullback-Leibler divergence of empirical distributions.

Bharath Bhushan Damodaran, Nicolas Courty, Philippe-Henri Gosselin

Kernel methods are powerful and flexible approach to solve many problems in machine learning. Due to the pairwise evaluations in kernel methods, the complexity of kernel computation grows as the data size increases; thus the applicability of kernel methods is limited for large scale datasets. Random Fourier Features (RFF) has been proposed to scale the kernel method for solving large scale datasets by approximating kernel function using randomized Fourier features. While this method proved very popular, still it exists shortcomings to be effectively used. As RFF samples the randomized features from a distribution independent of training data, it requires sufficient large number of feature expansions to have similar performances to kernelized classifiers, and this is proportional to the number samples in the dataset. Thus, reducing the number of feature dimensions is necessary to effectively scale to large datasets. In this paper, we propose a kernel approximation method in a data dependent way, coined as Pseudo Random Fourier Features (PRFF) for reducing the number of feature dimensions and also to improve the prediction performance. The proposed approach is evaluated on classification and regression problems and compared with the RFF, orthogonal random features and Nystr{ö}m approach

Vivien Seguy, Bharath Bhushan Damodaran, Rémi Flamary et al.

This paper presents a novel two-step approach for the fundamental problem of learning an optimal map from one distribution to another. First, we learn an optimal transport (OT) plan, which can be thought as a one-to-many map between the two distributions. To that end, we propose a stochastic dual approach of regularized OT, and show empirically that it scales better than a recent related approach when the amount of samples is very large. Second, we estimate a \textit{Monge map} as a deep neural network learned by approximating the barycentric projection of the previously-obtained OT plan. This parameterization allows generalization of the mapping outside the support of the input measure. We prove two theoretical stability results of regularized OT which show that our estimations converge to the OT plan and Monge map between the underlying continuous measures. We showcase our proposed approach on two applications: domain adaptation and generative modeling.