Modeling and hexahedral meshing of cerebral arterial networks from centerlinesMéghane Decroocq, Carole Frindel, Pierre Rougé et al.
Computational fluid dynamics (CFD) simulation provides valuable information on blood flow from the vascular geometry. However, it requires extracting precise models of arteries from low-resolution medical images, which remains challenging. Centerline-based representation is widely used to model large vascular networks with small vessels, as it encodes both the geometric and topological information and facilitates manual editing. In this work, we propose an automatic method to generate a structured hexahedral mesh suitable for CFD directly from centerlines. We addressed both the modeling and meshing tasks. We proposed a vessel model based on penalized splines to overcome the limitations inherent to the centerline representation, such as noise and sparsity. The bifurcations are reconstructed using a parametric model based on the anatomy that we extended to planar n-furcations. Finally, we developed a method to produce a volume mesh with structured, hexahedral, and flow-oriented cells from the proposed vascular network model. The proposed method offers better robustness to the common defects of centerlines and increases the mesh quality compared to state-of-the-art methods. As it relies on centerlines alone, it can be applied to edit the vascular model effortlessly to study the impact of vascular geometry and topology on hemodynamics. We demonstrate the efficiency of our method by entirely meshing a dataset of 60 cerebral vascular networks. 92% of the vessels and 83% of the bifurcations were meshed without defects needing manual intervention, despite the challenging aspect of the input data. The source code is released publicly.
1.4CVSep 23, 2021
Multi-resolution deep learning pipeline for dense large scale point cloudsThomas Richard, Florent Dupont, Guillaume Lavoue
Recent development of 3D sensors allows the acquisition of extremely dense 3D point clouds of large-scale scenes. The main challenge of processing such large point clouds remains in the size of the data, which induce expensive computational and memory cost. In this context, the full resolution cloud is particularly hard to process, and details it brings are rarely exploited. Although fine-grained details are important for detection of small objects, they can alter the local geometry of large structural parts and mislead deep learning networks. In this paper, we introduce a new generic deep learning pipeline to exploit the full precision of large scale point clouds, but only for objects that require details. The core idea of our approach is to split up the process into multiple sub-networks which operate on different resolutions and with each their specific classes to retrieve. Thus, the pipeline allows each class to benefit either from noise and memory cost reduction of a sub-sampling or from fine-grained details.
22.7CVMay 26, 2015
Efficient Decomposition of Image and Mesh Graphs by Lifted MulticutsMargret Keuper, Evgeny Levinkov, Nicolas Bonneel et al.
Formulations of the Image Decomposition Problem as a Multicut Problem (MP) w.r.t. a superpixel graph have received considerable attention. In contrast, instances of the MP w.r.t. a pixel grid graph have received little attention, firstly, because the MP is NP-hard and instances w.r.t. a pixel grid graph are hard to solve in practice, and, secondly, due to the lack of long-range terms in the objective function of the MP. We propose a generalization of the MP with long-range terms (LMP). We design and implement two efficient algorithms (primal feasible heuristics) for the MP and LMP which allow us to study instances of both problems w.r.t. the pixel grid graphs of the images in the BSDS-500 benchmark. The decompositions we obtain do not differ significantly from the state of the art, suggesting that the LMP is a competitive formulation of the Image Decomposition Problem. To demonstrate the generality of the LMP, we apply it also to the Mesh Decomposition Problem posed by the Princeton benchmark, obtaining state-of-the-art decompositions.