Yonggan Bu

Yuhang Yang, Ruikang Li, Jifei Ma et al.

The development of chemical processes, a cornerstone of chemical engineering, presents formidable challenges due to its multi-faceted nature, integrating specialized knowledge, conceptual design, and parametric simulation. Capitalizing on this, we propose CeProAgents, a hierarchical multi-agent system designed to automate the development of chemical process through collaborative division of labor. Our architecture comprises three specialized agent cohorts focused on knowledge, concept, and parameter respectively. To effectively adapt to the inherent complexity of chemical tasks, each cohort employs a novel hybrid architecture that integrates dynamic agent chatgroups with structured agentic workflows. To rigorously evaluate the system, we establish CeProBench, a multi-dimensional benchmark structured around three core pillars of chemical engineering. We design six distinct types of tasks across these dimensions to holistically assess the comprehensive capabilities of the system in chemical process development. The results not only confirm the effectiveness and superiority of our proposed approach but also reveal the transformative potential as well as the current boundaries of Large Language Models (LLMs) for industrial chemical engineering.

Yuhang Yang, Yonggan Bu, Shengyuan Zhou et al.

Spatial Transcriptomics (ST) measures gene expression while preserving spatial context, but its high cost and low throughput leave public datasets small. Inferring expression directly from widely available Hematoxylin and Eosin (H&E) stained histology offers a cost-effective alternative. However, existing approaches face several limitations: regression methods over-smooth toward the conditional mean, while generative methods are faithful but require slow multi-step inference; most methods treat genes as independent and equally important, ignoring inter-gene dependencies and heterogeneous gene informativeness; and most are tailored to a single resolution, either spot-level or cell-level. To address these issues, we propose DriftST, a unified framework for inferring spatially resolved gene expression from H&E images. DriftST builds on a Cellular Drifting generative model that learns a direct drift from a histology-conditioned source to the expression distribution, retaining generative expressiveness while enabling efficient one-step generation. To capture gene structure, we introduce the STransformer, which combines a co-expression attention module for inter-gene dependencies with a gene residual gate for differential gene importance. Operating on a generic gene-panel representation, DriftST applies directly to both spot-level and cell-level data in one framework, and extensive experiments across diverse tissues and platforms show that it achieves state-of-the-art performance at both resolutions.