Jaehyo Yoo

Hyunjae Kim, Jaehyo Yoo, Seunghyun Yoon et al.

Most weakly supervised named entity recognition (NER) models rely on domain-specific dictionaries provided by experts. This approach is infeasible in many domains where dictionaries do not exist. While a phrase retrieval model was used to construct pseudo-dictionaries with entities retrieved from Wikipedia automatically in a recent study, these dictionaries often have limited coverage because the retriever is likely to retrieve popular entities rather than rare ones. In this study, we present a novel framework, HighGEN, that generates NER datasets with high-coverage pseudo-dictionaries. Specifically, we create entity-rich dictionaries with a novel search method, called phrase embedding search, which encourages the retriever to search a space densely populated with various entities. In addition, we use a new verification process based on the embedding distance between candidate entity mentions and entity types to reduce the false-positive noise in weak labels generated by high-coverage dictionaries. We demonstrate that HighGEN outperforms the previous best model by an average F1 score of 4.7 across five NER benchmark datasets.

Seungseop Lim, Gibaeg Kim, Hyunkyung Lee et al.

An accurate differential diagnosis (DDx) is essential for patient care, shaping therapeutic decisions and influencing outcomes. Recently, Large Language Models (LLMs) have emerged as promising tools to support this process by generating a DDx list from patient narratives. However, existing evaluations of LLMs in this domain primarily rely on flat metrics, such as Top-k accuracy, which fail to distinguish between clinically relevant near-misses and diagnostically distant errors. To mitigate this limitation, we introduce H-DDx, a hierarchical evaluation framework that better reflects clinical relevance. H-DDx leverages a retrieval and reranking pipeline to map free-text diagnoses to ICD-10 codes and applies a hierarchical metric that credits predictions closely related to the ground-truth diagnosis. In benchmarking 22 leading models, we show that conventional flat metrics underestimate performance by overlooking clinically meaningful outputs, with our results highlighting the strengths of domain-specialized open-source models. Furthermore, our framework enhances interpretability by revealing hierarchical error patterns, demonstrating that LLMs often correctly identify the broader clinical context even when the precise diagnosis is missed.

Jaehyo Yoo, Jaewoo Kang

Many machine translation models are trained on bilingual corpus, which consist of aligned sentence pairs from two different languages with same semantic. However, there is a qualitative discrepancy between train and test set in bilingual corpus. While the most train sentences are created via automatic techniques such as crawling and sentence-alignment methods, the test sentences are annotated with the consideration of fluency by human. We suppose this discrepancy in training corpus will yield performance drop of translation model. In this work, we define \textit{fluency noise} to determine which parts of train sentences cause them to seem unnatural. We show that \textit{fluency noise} can be detected by simple gradient-based method with pre-trained classifier. By removing \textit{fluency noise} in train sentences, our final model outperforms the baseline on WMT-14 DE$\rightarrow$EN and RU$\rightarrow$EN. We also show the compatibility with back-translation augmentation, which has been commonly used to improve the fluency of the translation model. At last, the qualitative analysis of \textit{fluency noise} provides the insight of what points we should focus on.

Seungseop Lim, Gibaeg Kim, Wooseok Han et al.

Recent advances in Large Language Models (LLMs) have brought significant improvements to various service domains, including chatbots and medical pre-consultation applications. In the healthcare domain, the most common approach for adapting LLMs to multi-turn dialogue generation is Supervised Fine-Tuning (SFT). However, datasets for SFT in tasks like medical pre-consultation typically exhibit a skewed turn-count distribution. Training on such data induces a novel failure mechanism we term Format Inertia, where models tend to generate repetitive, format-correct, but diagnostically uninformative questions in long medical dialogues. To mitigate this observed failure mechanism, we adopt a simple, data-centric method that rebalances the turn-count distribution of the training dataset. Experimental results show that our approach substantially alleviates Format Inertia in medical pre-consultation.

Jean Seo, Hyunkyung Lee, Gibaeg Kim et al.

Safety is a paramount concern in clinical chatbot applications, where inaccurate or harmful responses can lead to serious consequences. Existing methods--such as guardrails and tool calling--often fall short in addressing the nuanced demands of the clinical domain. In this paper, we introduce TACOS (TAxonomy of COmprehensive Safety for Clinical Agents), a fine-grained, 21-class taxonomy that integrates safety filtering and tool selection into a single user intent classification step. TACOS is a taxonomy that can cover a wide spectrum of clinical and non-clinical queries, explicitly modeling varying safety thresholds and external tool dependencies. To validate our taxonomy, we curate a TACOS-annotated dataset and perform extensive experiments. Our results demonstrate the value of a new taxonomy specialized for clinical agent settings, and reveal useful insights about train data distribution and pretrained knowledge of base models.

Hyunjae Kim, Jaehyo Yoo, Seunghyun Yoon et al.

Recent named entity recognition (NER) models often rely on human-annotated datasets, requiring the significant engagement of professional knowledge on the target domain and entities. This research introduces an ask-to-generate approach that automatically generates NER datasets by asking questions in simple natural language to an open-domain question answering system (e.g., "Which disease?"). Despite using fewer in-domain resources, our models, solely trained on the generated datasets, largely outperform strong low-resource models by an average F1 score of 19.4 for six popular NER benchmarks. Furthermore, our models provide competitive performance with rich-resource models that additionally leverage in-domain dictionaries provided by domain experts. In few-shot NER, we outperform the previous best model by an F1 score of 5.2 on three benchmarks and achieve new state-of-the-art performance.

Minbyul Jeong, Mujeen Sung, Gangwoo Kim et al.

Biomedical question answering (QA) is a challenging task due to the scarcity of data and the requirement of domain expertise. Pre-trained language models have been used to address these issues. Recently, learning relationships between sentence pairs has been proved to improve performance in general QA. In this paper, we focus on applying BioBERT to transfer the knowledge of natural language inference (NLI) to biomedical QA. We observe that BioBERT trained on the NLI dataset obtains better performance on Yes/No (+5.59%), Factoid (+0.53%), List type (+13.58%) questions compared to performance obtained in a previous challenge (BioASQ 7B Phase B). We present a sequential transfer learning method that significantly performed well in the 8th BioASQ Challenge (Phase B). In sequential transfer learning, the order in which tasks are fine-tuned is important. We measure an unanswerable rate of the extractive QA setting when the formats of factoid and list type questions are converted to the format of the Stanford Question Answering Dataset (SQuAD).

Cheonbok Park, Inyoup Na, Yongjang Jo et al.

Attention networks, a deep neural network architecture inspired by humans' attention mechanism, have seen significant success in image captioning, machine translation, and many other applications. Recently, they have been further evolved into an advanced approach called multi-head self-attention networks, which can encode a set of input vectors, e.g., word vectors in a sentence, into another set of vectors. Such encoding aims at simultaneously capturing diverse syntactic and semantic features within a set, each of which corresponds to a particular attention head, forming altogether multi-head attention. Meanwhile, the increased model complexity prevents users from easily understanding and manipulating the inner workings of models. To tackle the challenges, we present a visual analytics system called SANVis, which helps users understand the behaviors and the characteristics of multi-head self-attention networks. Using a state-of-the-art self-attention model called Transformer, we demonstrate usage scenarios of SANVis in machine translation tasks. Our system is available at http://short.sanvis.org