Omar Metwally

Ahmed Alagha, Christopher Leclerc, Yousef Kotp et al.

Whole-slide image (WSI) preprocessing, typically comprising tissue detection followed by patch extraction, is foundational to AI-driven computational pathology workflows. This remains a major computational bottleneck as existing tools either rely on inaccurate heuristic thresholding for tissue detection, or adopt AI-based approaches trained on limited-diversity data that operate at the patch level, incurring substantial computational complexity. We present AtlasPatch, an efficient and scalable slide preprocessing framework for accurate tissue detection and high-throughput patch extraction with minimal computational overhead. AtlasPatch's tissue detection module is trained on a heterogeneous and semi-manually annotated dataset of ~30,000 WSI thumbnails, using efficient fine-tuning of the Segment-Anything model. The tool extrapolates tissue masks from thumbnails to full-resolution slides to extract patch coordinates at user-specified magnifications, with options to stream patches directly into common image encoders for embedding or store patch images, all efficiently parallelized across CPUs and GPUs. We assess AtlasPatch across segmentation precision, computational complexity, and downstream multiple-instance learning, matching state-of-the-art performance while operating at a fraction of their computational cost. AtlasPatch is open-source and available at https://github.com/AtlasAnalyticsLab/AtlasPatch.

Fady Aziz, Omar Metwally, Pascal Weller et al.

Human activity recognition is seen of great importance in the medical and surveillance fields. Radar has shown great feasibility for this field based on the captured micro-Doppler (μ-D) signatures. In this paper, a MIMO radar is used to formulate a novel micro-motion spectrogram for the angular velocity (μ-ω) in non-tangential scenarios. Combining both the μ-D and the μ-ω signatures have shown better performance. Classification accuracy of 88.9% was achieved based on a metric learning approach. The experimental setup was designed to capture micro-motion signatures on different aspect angles and line of sight (LOS). The utilized training dataset was of smaller size compared to the state-of-the-art techniques, where eight activities were captured. A few-shot learning approach is used to adapt the pre-trained model for fall detection. The final model has shown a classification accuracy of 86.42% for ten activities.