Ziyang Miao

Bin Wang, Tianyao He, Linke Ouyang et al.

Current document parsing methods compete primarily on model architecture innovation, while systematic engineering of training data remains underexplored. Yet SOTA models of different architectures and parameter scales exhibit highly consistent failure patterns on the same set of hard samples, suggesting that the performance bottleneck stems from shared deficiencies in training data rather than architecture itself. Building on this finding, we present \minerupro, which advances the state of the art solely through data engineering and training strategy optimization while keeping the 1.2B-parameter architecture of \mineru completely fixed. At its core is a Data Engine co-designed around coverage, informativeness, and annotation accuracy: Diversity-and-Difficulty-Aware Sampling expands training data from under 10M to 65.5M samples while correcting distribution shift; Cross-Model Consistency Verification leverages output agreement among heterogeneous models to assess sample difficulty and generate reliable annotations; the Judge-and-Refine pipeline improves annotation quality for hard samples through render-then-verify iterative correction. A three-stage progressive training strategy -- large-scale pre-training, hard sample fine-tuning, and GRPO alignment -- sequentially exploits these data at different quality tiers. On the evaluation front, we fix element-matching biases in OmniDocBench~v1.5 and introduce a Hard subset, establishing the more discriminative OmniDocBench~v1.6 protocol. Without any architectural modification, \minerupro achieves 95.69 on OmniDocBench~v1.6, improving over the same-architecture baseline by 2.71 points and surpassing all existing methods including models with over 200$\times$ more parameters.

Jiayuan Ding, Jianhui Lin, Ziyang Miao et al.

Pre-trained foundation models (FMs) have begun transforming single-cell genomics, but scaling them raises privacy concerns. Moreover, unlike text data, single-cell data is unordered and exhibits a unique tabular structure that current single-cell FMs overlook. We introduce Tabula, a privacy-preserving FM designed with federated learning (FL) that explicitly models the tabular structure of single-cell data. To deploy Tabula, we further developed Chiron, a decentralized AI agent-enabled platform for collaborative training across institutions without sharing raw data. Beyond strong performance across downstream benchmarks, Tabula reveals combinatorial regulatory logic across diverse biological systems, including hematopoiesis, pancreatic endogenesis, neurogenesis, and cardiogenesis. Using a new scRNA-seq dataset of paired young and aged human fibroblasts, Tabula nominates rejuvenation factors through age- and identity score-guided in silico prioritization, outperforming conventional approaches. Thus, Tabula represents an important advance in single-cell foundation modeling by integrating tabular learning with FL, paving the way toward privacy-preserving virtual cells for human health.

Bangrui Xu, Ziyang Miao, Xuanhe Zhou et al.

VLM-based OCR models have become the de facto choice for document parsing, as they can accurately extract page-level elements (e.g., paragraphs within individual pages) together with their bounding boxes and textual content. However, downstream applications such as RAG require coherent document-level information, whereas these models often break cross-page continuity and fail to recover disrupted structures, such as paragraphs and tables truncated by page boundaries. Such relationships are not confined to a single page; instead, they require joint analysis of titles, paragraphs, tables, and images spanning multiple pages. A natural solution is therefore to reuse existing OCR outputs and reconstruct document-level logical structures through post-processing. To this end, we propose MinerU-Popo, a lightweight and universal framework for POst-Processing OCR outputs, which converts page-level results from diverse parsers into coherent document-level structures. MinerU-Popo decomposes the problem into four focused subtasks: text truncation recovery, table truncation recovery, title hierarchy reconstruction, and image-text association. To address these effectively, we build a task-oriented data engine with task-specific input filtering, and use the generated data (30K) to fine-tune a lightweight post-processing model (Qwen3-VL-4B). To support long documents, we introduce dynamic chunking with overlap-based synchronization, which aligns chunk-level outputs from the fine-tuned model and preserves global consistency. Finally, we assemble the aligned outputs into a tree-structured document representation, further enriched with node chunking and summaries for downstream retrieval and analysis. Empirical results show MinerU-Popo improves title-hierarchy TEDS by at least 20% across all five tested OCR models, improves RAG accuracy and reduces per-query latency.