Kui Liu

SE
h-index47
26papers
1,721citations
Novelty55%
AI Score60

26 Papers

SEAug 8, 2022
Is this Change the Answer to that Problem? Correlating Descriptions of Bug and Code Changes for Evaluating Patch Correctness

Haoye Tian, Xunzhu Tang, Andrew Habib et al.

In this work, we propose a novel perspective to the problem of patch correctness assessment: a correct patch implements changes that "answer" to a problem posed by buggy behaviour. Concretely, we turn the patch correctness assessment into a Question Answering problem. To tackle this problem, our intuition is that natural language processing can provide the necessary representations and models for assessing the semantic correlation between a bug (question) and a patch (answer). Specifically, we consider as inputs the bug reports as well as the natural language description of the generated patches. Our approach, Quatrain, first considers state of the art commit message generation models to produce the relevant inputs associated to each generated patch. Then we leverage a neural network architecture to learn the semantic correlation between bug reports and commit messages. Experiments on a large dataset of 9135 patches generated for three bug datasets (Defects4j, Bugs.jar and Bears) show that Quatrain can achieve an AUC of 0.886 on predicting patch correctness, and recalling 93% correct patches while filtering out 62% incorrect patches. Our experimental results further demonstrate the influence of inputs quality on prediction performance. We further perform experiments to highlight that the model indeed learns the relationship between bug reports and code change descriptions for the prediction. Finally, we compare against prior work and discuss the benefits of our approach.

SEJan 7, 2023
App Review Driven Collaborative Bug Finding

Xunzhu Tang, Haoye Tian, Pingfan Kong et al.

Software development teams generally welcome any effort to expose bugs in their code base. In this work, we build on the hypothesis that mobile apps from the same category (e.g., two web browser apps) may be affected by similar bugs in their evolution process. It is therefore possible to transfer the experience of one historical app to quickly find bugs in its new counterparts. This has been referred to as collaborative bug finding in the literature. Our novelty is that we guide the bug finding process by considering that existing bugs have been hinted within app reviews. Concretely, we design the BugRMSys approach to recommend bug reports for a target app by matching historical bug reports from apps in the same category with user app reviews of the target app. We experimentally show that this approach enables us to quickly expose and report dozens of bugs for targeted apps such as Brave (web browser app). BugRMSys's implementation relies on DistilBERT to produce natural language text embeddings. Our pipeline considers similarities between bug reports and app reviews to identify relevant bugs. We then focus on the app review as well as potential reproduction steps in the historical bug report (from a same-category app) to reproduce the bugs. Overall, after applying BugRMSys to six popular apps, we were able to identify, reproduce and report 20 new bugs: among these, 9 reports have been already triaged, 6 were confirmed, and 4 have been fixed by official development teams, respectively.

SEMar 27Code
A Benchmark for Evaluating Repository-Level Code Agents with Intermediate Reasoning on Feature Addition Task

Shuhan Liu, Zhiyi Zhao, Xing Hu et al.

Repository-level code agents have shown strong promise in real-world feature addition tasks, making reliable evaluation of their capabilities increasingly important. However, existing benchmarks primarily evaluate these agents as black boxes based on final test correctness, providing limited insight into how they reason and where failures arise. To address this limitation, we introduce RACE-bench, a reasoning-augmented benchmark for evaluating code agents on repository-level feature addition tasks. RACE-bench contains 528 real-world feature addition instances from 12 open-source repositories. Each instance is paired with executable patch verification and structured intermediate reasoning ground truth covering issue understanding, file localization, implementation tasks, and step decomposition. Based on this design, we introduce a dual-track evaluation framework that jointly measures patch correctness and intermediate reasoning quality. We evaluate three representative repository-level code agents on RACE-bench. On the full benchmark, Resolved Rates range from 29% to 70% across different agents. Our reasoning-level analysis further shows that while current agents perform well at understanding high-level intent, their performance degrades substantially when translating intent into concrete implementation steps. We also find that apply-success but test-fail cases exhibit lower reasoning recall (35.7% decrease) and higher over-prediction (94.1% increase) compared to successful cases. These findings highlight the importance of evaluating repository-level code agents beyond final patch correctness by examining the quality of their reasoning processes.

SEMay 26
LLM-based Mockless Unit Test Generation for Java

Qinghua Xu, Guancheng Wang, Lionel Briand et al.

Large language models (LLMs) have shown strong potential for automated test generation, yet most approaches to generating Java unit tests still rely on mocking frameworks to handle dependencies. Mockless test generation could exercise more real low-level code, but it faces challenges such as invalid test code generation due to hallucination, strict language constraints, and inadequate dependency awareness. We identify two causes behind these hallucinations: not knowing, where the LLM lacks sufficient context, and not following, where the LLM fails to comply with constraints even when they are provided. We present MocklessTester, a mockless unit test generation approach built around two strategies: context-enriched generation and constraint-enforced fixing. To mitigate not knowing, context-enriched generation mines real usage patterns from existing code to generate tests. To mitigate not following, constraint-enforced fixing performs two-stage repair under symbol-, protocol-, and iteration-level constraints, using a ClassIndex, a Markov typestate model, and experience memory. We evaluate MocklessTester against the state-of-the-art baseline on Defects4J and Deps4J. Results show that MocklessTester improves line coverage by 19.99% and 22.69% and branch coverage by 24.90% and 15.78% on the two benchmarks, respectively, and improves mutation score by 13.67% and 0.17%. Beyond the class under test, MocklessTester also exercises more real dependency code, covering 378 and 55 additional lines in dependency classes, respectively. The improvement in test quality comes with higher total token and time costs than the baseline. Nevertheless, the cost per method remains practical, averaging 108.97 seconds and 26.59k tokens on Defects4J, and 69.85 seconds and 25.46k tokens on Deps4J. Ablation results confirm that all major components contribute positively to the final performance.

SEApr 23
Call-Chain-Aware LLM-Based Test Generation for Java Projects

Guancheng Wang, Qinghua Xu, Lionel C. Briand et al.

Large language models (LLMs) have recently shown strong potential for generating project-level unit tests. However, existing state-of-the-art approaches primarily rely on execution-path information to guide prompt construction, which is often insufficient for complex software systems with rich inter-class dependencies, deep call chains, and intricate object initialization requirements. In this paper, we present CAT, a novel call-chain-aware LLM-based test generation approach that explicitly incorporates call-chain and dependency contexts into prompts through dedicated static analysis. To construct executable, semantically valid test contexts, CAT systematically models caller--callee relationships, object constructors, and third-party dependencies, and supports iterative test fixing when generation failures occur. We evaluate CAT on the widely used Defects4J benchmark and on four real-world GitHub projects released after the LLM's cut-off date. The results show that, across projects in Defects4J, CAT improves line and branch coverage by 18.04% and 21.74%, respectively, over the state-of-the-art approach PANTA, while consistently achieving superior performance on post-cutoff real-world projects. An ablation study further demonstrates the importance of call-chain and dependency contexts in CAT.

SEApr 8
Mutation-Guided Unit Test Generation with a Large Language Model

Guancheng Wang, Qinghua Xu, Lionel Briand et al.

Unit tests play a vital role in uncovering potential faults in software. While tools like EvoSuite focus on maximizing code coverage, recent advances in large language models (LLMs) have shifted attention toward LLM-based test generation. However, code coverage metrics -- such as line and branch coverage -- remain overly emphasized in reported research, despite being weak indicators of a test suite's fault-detection capability. In contrast, mutation score offers a more reliable and stringent measure, as demonstrated in our findings where some test suites achieve 100% coverage but only 4% mutation score. Although a few studies consider mutation score, the effectiveness of LLMs in killing mutants remains underexplored. In this paper, we propose MUTGEN, a mutation-guided, LLM-based test generation approach that incorporates mutation feedback directly into the prompt. Evaluated on 204 subjects from two benchmarks, MUTGEN significantly outperforms both EvoSuite and vanilla prompt-based strategies in terms of mutation score. Furthermore, MUTGEN introduces an iterative generation mechanism that pushes the limits of LLMs in killing additional mutants. Our study also provide insights into the limitations of LLM-based generation, analyzing the reasons for live and uncovered mutants, and the impact of different mutation operators on generation effectiveness.

SEMar 25
Hallucination to Consensus: Multi-Agent LLMs for End-to-End JUnit Test Generation

Qinghua Xu, Guancheng Wang, Lionel Briand et al.

Unit testing plays a critical role in ensuring software correctness. However, writing unit tests manually is labor-intensive, especially for strongly typed languages like Java, motivating the need for automated approaches. Traditional methods primarily rely on search-based or randomized algorithms to achieve high code coverage and produce regression oracles, which are derived from the program's current behavior rather than its intended functionality. Recent advances in LLMs have enabled oracle generation from natural language descriptions, aligning better with user requirements. However, existing LLM-based methods often require fine-tuning or rely on external tools such as EvoSuite for test prefix generation, making them costly or cumbersome to apply in practice. In this work, we propose CANDOR, a novel prompt engineering-based LLM framework for automated unit test generation in Java. CANDOR orchestrates multiple specialized LLM agents to collaboratively generate complete tests. To mitigate the notorious hallucinations in LLMs and improve oracle correctness, we introduce a novel strategy that engages multiple reasoning LLMs in a panel discussion and generates accurate oracles based on consensus. Additionally, to reduce the verbosity of reasoning LLMs' outputs, we propose a novel dual-LLM pipeline to produce concise and structured oracle evaluations. Our experiments show that CANDOR is comparable with EvoSuite in generating tests with high code coverage and clearly superior in terms of mutation score. Moreover, our prompt engineering-based approach CANDOR significantly outperforms the SOTA fine-tuning-based oracle generator TOGLL by at least 21.1 percentage points in oracle correctness on both correct and faulty source code. Further ablation studies confirm the critical contributions of key agents in generating high-quality tests.

SEAug 3, 2020Code
On the Efficiency of Test Suite based Program Repair: A Systematic Assessment of 16 Automated Repair Systems for Java Programs

Kui Liu, Shangwen Wang, Anil Koyuncu et al.

Test-based automated program repair has been a prolific field of research in software engineering in the last decade. Many approaches have indeed been proposed, which leverage test suites as a weak, but affordable, approximation to program specifications. Although the literature regularly sets new records on the number of benchmark bugs that can be fixed, several studies increasingly raise concerns about the limitations and biases of state-of-the-art approaches. For example, the correctness of generated patches has been questioned in a number of studies, while other researchers pointed out that evaluation schemes may be misleading with respect to the processing of fault localization results. Nevertheless, there is little work addressing the efficiency of patch generation, with regard to the practicality of program repair. In this paper, we fill this gap in the literature, by providing an extensive review on the efficiency of test suite based program repair. Our objective is to assess the number of generated patch candidates, since this information is correlated to (1) the strategy to traverse the search space efficiently in order to select sensical repair attempts, (2) the strategy to minimize the test effort for identifying a plausible patch, (3) as well as the strategy to prioritize the generation of a correct patch. To that end, we perform a large-scale empirical study on the efficiency, in terms of quantity of generated patch candidates of the 16 open-source repair tools for Java programs. The experiments are carefully conducted under the same fault localization configurations to limit biases.

CVJun 9, 2020Code
Neural Network Activation Quantization with Bitwise Information Bottlenecks

Xichuan Zhou, Kui Liu, Cong Shi et al.

Recent researches on information bottleneck shed new light on the continuous attempts to open the black box of neural signal encoding. Inspired by the problem of lossy signal compression for wireless communication, this paper presents a Bitwise Information Bottleneck approach for quantizing and encoding neural network activations. Based on the rate-distortion theory, the Bitwise Information Bottleneck attempts to determine the most significant bits in activation representation by assigning and approximating the sparse coefficient associated with each bit. Given the constraint of a limited average code rate, the information bottleneck minimizes the rate-distortion for optimal activation quantization in a flexible layer-by-layer manner. Experiments over ImageNet and other datasets show that, by minimizing the quantization rate-distortion of each layer, the neural network with information bottlenecks achieves the state-of-the-art accuracy with low-precision activation. Meanwhile, by reducing the code rate, the proposed method can improve the memory and computational efficiency by over six times compared with the deep neural network with standard single-precision representation. Codes will be available on GitHub when the paper is accepted \url{https://github.com/BitBottleneck/PublicCode}.

SEOct 3, 2018Code
FixMiner: Mining Relevant Fix Patterns for Automated Program Repair

Anil Koyuncu, Kui Liu, Tegawendé F. Bissyandé et al.

Patching is a common activity in software development. It is generally performed on a source code base to address bugs or add new functionalities. In this context, given the recurrence of bugs across projects, the associated similar patches can be leveraged to extract generic fix actions. While the literature includes various approaches leveraging similarity among patches to guide program repair, these approaches often do not yield fix patterns that are tractable and reusable as actionable input to APR systems. In this paper, we propose a systematic and automated approach to mining relevant and actionable fix patterns based on an iterative clustering strategy applied to atomic changes within patches. The goal of FixMiner is thus to infer separate and reusable fix patterns that can be leveraged in other patch generation systems. Our technique, FixMiner, leverages Rich Edit Script which is a specialized tree structure of the edit scripts that captures the AST-level context of the code changes. FixMiner uses different tree representations of Rich Edit Scripts for each round of clustering to identify similar changes. These are abstract syntax trees, edit actions trees, and code context trees. We have evaluated FixMiner on thousands of software patches collected from open source projects. Preliminary results show that we are able to mine accurate patterns, efficiently exploiting change information in Rich Edit Scripts. We further integrated the mined patterns to an automated program repair prototype, PARFixMiner, with which we are able to correctly fix 26 bugs of the Defects4J benchmark. Beyond this quantitative performance, we show that the mined fix patterns are sufficiently relevant to produce patches with a high probability of correctness: 81% of PARFixMiner's generated plausible patches are correct.

SEFeb 8, 2024
Investigating White-Box Attacks for On-Device Models

Mingyi Zhou, Xiang Gao, Jing Wu et al.

Numerous mobile apps have leveraged deep learning capabilities. However, on-device models are vulnerable to attacks as they can be easily extracted from their corresponding mobile apps. Existing on-device attacking approaches only generate black-box attacks, which are far less effective and efficient than white-box strategies. This is because mobile deep learning frameworks like TFLite do not support gradient computing, which is necessary for white-box attacking algorithms. Thus, we argue that existing findings may underestimate the harmfulness of on-device attacks. To this end, we conduct a study to answer this research question: Can on-device models be directly attacked via white-box strategies? We first systematically analyze the difficulties of transforming the on-device model to its debuggable version, and propose a Reverse Engineering framework for On-device Models (REOM), which automatically reverses the compiled on-device TFLite model to the debuggable model. Specifically, REOM first transforms compiled on-device models into Open Neural Network Exchange format, then removes the non-debuggable parts, and converts them to the debuggable DL models format that allows attackers to exploit in a white-box setting. Our experimental results show that our approach is effective in achieving automated transformation among 244 TFLite models. Compared with previous attacks using surrogate models, REOM enables attackers to achieve higher attack success rates with a hundred times smaller attack perturbations. In addition, because the ONNX platform has plenty of tools for model format exchanging, the proposed method based on the ONNX platform can be adapted to other model formats. Our findings emphasize the need for developers to carefully consider their model deployment strategies, and use white-box methods to evaluate the vulnerability of on-device models.

SEMay 27, 2025
An LLM-as-Judge Metric for Bridging the Gap with Human Evaluation in SE Tasks

Xin Zhou, Kisub Kim, Ting Zhang et al.

Large Language Models (LLMs) and other automated techniques have been increasingly used to support software developers by generating software artifacts such as code snippets, patches, and comments. However, accurately assessing the correctness of these generated artifacts remains a significant challenge. On one hand, human evaluation provides high accuracy but is labor-intensive and lacks scalability. On the other hand, many automatic evaluation metrics are scalable and require minimal human effort, but they often fail to accurately reflect the actual correctness of generated software artifacts. In this paper, we present SE-Jury, the first evaluation metric for LLM-as-Ensemble-Judge specifically designed to accurately assess the correctness of generated software artifacts. SE-Jury first defines five distinct evaluation strategies, each implemented by an independent judge. A dynamic team selection mechanism then identifies the most appropriate subset of judges as a team to produce a final correctness score through ensembling. We evaluate SE-Jury across a diverse set of software engineering (SE) benchmarks that span three popular SE tasks: code generation, automated program repair, and code summarization. Results demonstrate that SE-Jury consistently achieves a higher correlation with human judgments, with improvements ranging from 29.6% to 140.8% over existing automatic metrics. SE-Jury reaches agreement levels with human annotators that are close to inter-annotator agreement in code generation and program repair. These findings underscore SE-Jury's potential as a scalable and reliable alternative to human evaluation in these SE tasks.

SEApr 9
ZeroCoder: Can LLMs Improve Code Generation Without Ground-Truth Supervision?

Lishui Fan, Mouxiang Chen, Tingwei Zhu et al.

Code generation is important in software engineering, and Reinforcement Learning with Verifiable Rewards (RLVR) is a powerful paradigm to improve it through execution-based feedback. However, most RLVR pipelines rely on human-curated tests, making progress bottlenecked by scarce and costly supervision. Existing work tried to use self-generated tests to ground rewards, but the lack of discriminative tests constrains the effect due to the sub-optimal performance of the model on test generation. We aim to improve code generation without ground-truth supervision by co-evolving code and test generation, so that their interactions yield progressively more informative supervision. To this end, we present ZeroCoder, a fully label-free co-evolutionary framework that jointly trains a Coder and a Tester using execution feedback from self-generated code-test interactions. For each problem, ZeroCoder executes sampled solutions against sampled tests to form a passing matrix, identifies a consensus subset of likely-correct solutions and consistent tests via a pluggable selection algorithm, and derives role-specific rewards. To ensure reward quality, ZeroCoder filters low-information instances via rank-based pre-filtering and trains the Tester with a curriculum balancing validity and mutation-driven discriminativeness. We further identify selector drift, the progressive miscalibration of fixed selection rules during co-evolution, and introduce DyB4, a Bayesian selector that uses as few as 10 labeled instances to recalibrate its priors dynamically. Across three models and six benchmarks, ZeroCoder consistently improves code generation and test generation. In the fully label-free setting, it improves code generation by up to 14.5% over the base model on Qwen2.5-Coder-7B-Instruct. With DyB4, the gain reaches 21.6%, while test generation improves by 24.3%, approaching oracle-supervised performance.

SEApr 3
Dependency-Guided Repository-Level C-to-Rust Translation with Reinforcement Alignment

Jia Feng, Wenjie Gan, Cuiyun Gao et al.

Automating C-to-Rust migration is critical for improving software security without sacrificing performance. Traditional rule-based methods struggle with diverse C idioms, often producing rigid and unidiomatic Rust code. Large Language Models (LLMs), trained on massive code corpora, offer a promising alternative by leveraging cross-language generalization to generate more idiomatic and maintainable Rust code. However, several challenges remain. First, existing LLM-based approaches fail to handle cross-file dependencies effectively, either ignoring them or including entire files as context, which limits accurate dependency modeling. Second, complex dependencies and structured inputs and outputs make it difficult to verify syntactic correctness and functional equivalence at the repository level. Third, the lack of large-scale C-Rust parallel data constrains model performance. We propose DepTrans, a framework that combines model capability enhancement with structured inference. DepTrans introduces Reinforcement-Aligned Syntax Training to improve generation quality through multi-task fine-tuning and feedback-driven reinforcement learning. It further applies Dependency-Guided Iterative Refinement to capture fine-grained cross-file dependencies and iteratively refine generated Rust code. We construct a dataset of 85k training samples and a benchmark of 145 repository-level instances. Experiments show that DepTrans achieves a 60.7 percent compilation success rate and 43.5 percent computational accuracy, outperforming the strongest baseline by 22.8 and 17.3 percentage points. It also successfully builds 7 of 15 industrial C projects, demonstrating its practical potential.

SEOct 2, 2025
SIEVE: Towards Verifiable Certification for Code-datasets

Fatou Ndiaye Mbodji, El-hacen Diallo, Jordan Samhi et al.

Code agents and empirical software engineering rely on public code datasets, yet these datasets lack verifiable quality guarantees. Static 'dataset cards' inform, but they are neither auditable nor do they offer statistical guarantees, making it difficult to attest to dataset quality. Teams build isolated, ad-hoc cleaning pipelines. This fragments effort and raises cost. We present SIEVE, a community-driven framework. It turns per-property checks into Confidence Cards-machine-readable, verifiable certificates with anytime-valid statistical bounds. We outline a research plan to bring SIEVE to maturity, replacing narrative cards with anytime-verifiable certification. This shift is expected to lower quality-assurance costs and increase trust in code-datasets.

SESep 25, 2025
Fine-Tuning LLMs to Analyze Multiple Dimensions of Code Review: A Maximum Entropy Regulated Long Chain-of-Thought Approach

Yongda Yu, Guohao Shi, Xianwei Wu et al.

Large Language Models (LLMs) have shown great potential in supporting automated code review due to their impressive capabilities in context understanding and reasoning. However, these capabilities are still limited compared to human-level cognition because they are heavily influenced by the training data. Recent research has demonstrated significantly improved performance through fine-tuning LLMs with code review data. However, compared to human reviewers who often simultaneously analyze multiple dimensions of code review to better identify issues, the full potential of these methods is hampered by the limited or vague information used to fine-tune the models. This paper contributes MelcotCR, a chain-of-thought (COT) fine-tuning approach that trains LLMs with an impressive reasoning ability to analyze multiple dimensions of code review by harnessing long COT techniques to provide rich structured information. To address context loss and reasoning logic loss issues that frequently occur when LLMs process long COT prompts, we propose a solution that combines the Maximum Entropy (ME) modeling principle with pre-defined reasoning pathways in MelcotCR to enable more effective utilization of in-context knowledge within long COT prompts while strengthening the logical tightness of the reasoning process. Empirical evaluations on our curated MelcotCR dataset and the public CodeReviewer dataset reveal that a low-parameter base model, such as 14B Qwen2.5, fine-tuned with MelcotCR can surpass state-of-the-art methods in terms of the accuracy of detecting and describing code issues, with its performance remarkably on par with that of the 671B DeepSeek-R1 model.

CRJan 17, 2022
Characterizing Sensor Leaks in Android Apps

Xiaoyu Sun, Xiao Chen, Kui Liu et al.

While extremely valuable to achieve advanced functions, mobile phone sensors can be abused by attackers to implement malicious activities in Android apps, as experimentally demonstrated by many state-of-the-art studies. There is hence a strong need to regulate the usage of mobile sensors so as to keep them from being exploited by malicious attackers. However, despite the fact that various efforts have been put in achieving this, i.e., detecting privacy leaks in Android apps, we have not yet found approaches to automatically detect sensor leaks in Android apps. To fill the gap, we designed and implemented a novel prototype tool, SEEKER, that extends the famous FlowDroid tool to detect sensor-based data leaks in Android apps. SEEKER conducts sensor-focused static taint analyses directly on the Android apps' bytecode and reports not only sensor-triggered privacy leaks but also the sensor types involved in the leaks. Experimental results using over 40,000 real-world Android apps show that SEEKER is effective in detecting sensor leaks in Android apps, and malicious apps are more interested in leaking sensor data than benign apps.

SENov 15, 2021
Beep: Fine-grained Fix Localization by Learning to Predict Buggy Code Elements

Shangwen Wang, Kui Liu, Bo Lin et al.

Software Fault Localization refers to the activity of finding code elements (e.g., statements) that are related to a software failure. The state-of-the-art fault localization techniques, however, produce coarse-grained results that can deter manual debugging or mislead automated repair tools. In this work, we focus specifically on the fine-grained identification of code elements (i.e., tokens) that must be changed to fix a buggy program: we refer to it as fix localization. This paper introduces a neural network architecture (named Beep) that builds on AST paths to predict the buggy code element as well as the change action that must be applied to repair a program. Leveraging massive data of bugs and patches within the CoCoNut dataset, we trained a model that was (1) effective in localizing the buggy tokens with the Mean First Rank significantly higher than a statistics based baseline and a machine learning-based baseline, and (2) effective in predicting the repair operators (with the associated buggy code elements) with a Recall@1= 30-45% and the Mean First Rank=7-12 (evaluated by CoCoNut, ManySStuBs4J, and Defects4J datasets). To showcase how fine-grained fix localization can help program repair, we employ it in two repair pipelines where we use either a code completion engine to predict the correct token or a set of heuristics to search for the suitable donor code. A key strength of accurate fix localization for program repair is that it reduces the chance of patch overfitting, a challenge in generate-and-validate automated program repair: both two repair pipelines achieve a correctness ratio of 100%, i.e., all generated patches are found to be correct. Moreover, accurate fix localization helps enhance the efficiency of program repair.

SEJul 28, 2021
Predicting Patch Correctness Based on the Similarity of Failing Test Cases

Haoye Tian, Yinghua Li, Weiguo Pian et al.

Towards predicting patch correctness in APR, we propose a simple, but novel hypothesis on how the link between the patch behaviour and failing test specifications can be drawn: similar failing test cases should require similar patches. We then propose BATS, an unsupervised learning-based system to predict patch correctness by checking patch Behaviour Against failing Test Specification. BATS exploits deep representation learning models for code and patches: for a given failing test case, the yielded embedding is used to compute similarity metrics in the search for historical similar test cases in order to identify the associated applied patches, which are then used as a proxy for assessing generated patch correctness. Experimentally, we first validate our hypothesis by assessing whether ground-truth developer patches cluster together in the same way that their associated failing test cases are clustered. Then, after collecting a large dataset of 1278 plausible patches (written by developers or generated by some 32 APR tools), we use BATS to predict correctness: BATS achieves an AUC between 0.557 to 0.718 and a recall between 0.562 and 0.854 in identifying correct patches. Compared against previous work, we demonstrate that our approach outperforms state-of-the-art performance in patch correctness prediction, without the need for large labeled patch datasets in contrast with prior machine learning-based approaches. While BATS is constrained by the availability of similar test cases, we show that it can still be complementary to existing approaches: used in conjunction with a recent approach implementing supervised learning, BATS improves the overall recall in detecting correct patches. We finally show that BATS can be complementary to the state-of-the-art PATCH-SIM dynamic approach of identifying the correct patches for APR tools.

SEAug 7, 2020
Evaluating Representation Learning of Code Changes for Predicting Patch Correctness in Program Repair

Haoye Tian, Kui Liu, Abdoul Kader Kaboreé et al.

A large body of the literature of automated program repair develops approaches where patches are generated to be validated against an oracle (e.g., a test suite). Because such an oracle can be imperfect, the generated patches, although validated by the oracle, may actually be incorrect. While the state of the art explore research directions that require dynamic information or rely on manually-crafted heuristics, we study the benefit of learning code representations to learn deep features that may encode the properties of patch correctness. Our work mainly investigates different representation learning approaches for code changes to derive embeddings that are amenable to similarity computations. We report on findings based on embeddings produced by pre-trained and re-trained neural networks. Experimental results demonstrate the potential of embeddings to empower learning algorithms in reasoning about patch correctness: a machine learning predictor with BERT transformer-based embeddings associated with logistic regression yielded an AUC value of about 0.8 in predicting patch correctness on a deduplicated dataset of 1000 labeled patches. Our study shows that learned representations can lead to reasonable performance when comparing against the state-of-the-art, PATCH-SIM, which relies on dynamic information. These representations may further be complementary to features that were carefully (manually) engineered in the literature.

SEJul 12, 2019
iFixR: Bug Report driven Program Repair

Anil Koyuncu, Kui Liu, Tegawendé F. Bissyandé et al.

Issue tracking systems are commonly used in modern software development for collecting feedback from users and developers. An ultimate automation target of software maintenance is then the systematization of patch generation for user-reported bugs. Although this ambition is aligned with the momentum of automated program repair, the literature has, so far, mostly focused on generate-and-validate setups where fault localization and patch generation are driven by a well-defined test suite. On the one hand, however, the common (yet strong) assumption on the existence of relevant test cases does not hold in practice for most development settings: many bugs are reported without the available test suite being able to reveal them. On the other hand, for many projects, the number of bug reports generally outstrips the resources available to triage them. Towards increasing the adoption of patch generation tools by practitioners, we investigate a new repair pipeline, iFixR, driven by bug reports: (1) bug reports are fed to an IR-based fault localizer; (2) patches are generated from fix patterns and validated via regression testing; (3) a prioritized list of generated patches is proposed to developers. We evaluate iFixR on the Defects4J dataset, which we enriched (i.e., faults are linked to bug reports) and carefully-reorganized (i.e., the timeline of test-cases is naturally split). iFixR generates genuine/plausible patches for 21/44 Defects4J faults with its IR-based fault localizer. iFixR accurately places a genuine/plausible patch among its top-5 recommendation for 8/13 of these faults (without using future test cases in generation-and-validation).

SEMar 20, 2019
TBar: Revisiting Template-based Automated Program Repair

Kui Liu, Anil Koyuncu, Dongsun Kim et al.

We revisit the performance of template-based APR to build comprehensive knowledge about the effectiveness of fix patterns, and to highlight the importance of complementary steps such as fault localization or donor code retrieval. To that end, we first investigate the literature to collect, summarize and label recurrently-used fix patterns. Based on the investigation, we build TBar, a straightforward APR tool that systematically attempts to apply these fix patterns to program bugs. We thoroughly evaluate TBar on the Defects4J benchmark. In particular, we assess the actual qualitative and quantitative diversity of fix patterns, as well as their effectiveness in yielding plausible or correct patches. Eventually, we find that, assuming a perfect fault localization, TBar correctly/plausibly fixes 74/101 bugs. Replicating a standard and practical pipeline of APR assessment, we demonstrate that TBar correctly fixes 43 bugs from Defects4J, an unprecedented performance in the literature (including all approaches, i.e., template-based, stochastic mutation-based or synthesis-based APR).

SEFeb 7, 2019
D&C: A Divide-and-Conquer Approach to IR-based Bug Localization

Anil Koyuncu, Tegawendé F. Bissyandé, Dongsun Kim et al.

Many automated tasks in software maintenance rely on information retrieval techniques to identify specific information within unstructured data. Bug localization is such a typical task, where text in a bug report is analyzed to identify file locations in the source code that can be associated to the reported bug. Despite the promising results, the performance offered by IR-based bug localization tools is still not significant for large adoption. We argue that one reason could be the attempt to build a one-size-fits-all approach. In this paper, we extensively study the performance of state-of-the-art bug localization tools, focusing on query formulation and its importance with respect to the localization performance. Building on insights from this study, we propose a new learning approach where multiple classifier models are trained on clear-cut sets of bug-location pairs. Concretely, we apply a gradient boosting supervised learning approach to various sets of bug reports whose localizations appear to be successful with specific types of features. The training scenario builds on our findings that the various state-of-the-art localization tools can be highly performant for specific sets of bug reports. We implement D&C, which computes appropriate weights that should be assigned to the similarity measurements between pairs of information token types. Experimental results on large and up-to-date datasets reveal that D&C outperforms state-of-the-art tools. On average, the experiments yield an MAP score of 0.52, and an MRR score of 0.63 with a curated dataset, which provides a substantial performance improvement over all tools: MAP is improved by between 4 and up to 10 percentage points, while MRR is improved by between 1 and up to 12. Finally, we note that D&C is stable in its localization performance: around 50% of bugs can be located at Top1, 77% at Top5 and 85% at Top10.

SEDec 18, 2018
You Cannot Fix What You Cannot Find! An Investigation of Fault Localization Bias in Benchmarking Automated Program Repair Systems

Kui Liu, Anil Koyuncu, Tegawendé F. Bissyandé et al.

Properly benchmarking Automated Program Repair (APR) systems should contribute to the development and adoption of the research outputs by practitioners. To that end, the research community must ensure that it reaches significant milestones by reliably comparing state-of-the-art tools for a better understanding of their strengths and weaknesses. In this work, we identify and investigate a practical bias caused by the fault localization (FL) step in a repair pipeline. We propose to highlight the different fault localization configurations used in the literature, and their impact on APR systems when applied to the Defects4J benchmark. Then, we explore the performance variations that can be achieved by `tweaking' the FL step. Eventually, we expect to create a new momentum for (1) full disclosure of APR experimental procedures with respect to FL, (2) realistic expectations of repairing bugs in Defects4J, as well as (3) reliable performance comparison among the state-of-the-art APR systems, and against the baseline performance results of our thoroughly assessed kPAR repair tool. Our main findings include: (a) only a subset of Defects4J bugs can be currently localized by commonly-used FL techniques; (b) current practice of comparing state-of-the-art APR systems (i.e., counting the number of fixed bugs) is potentially misleading due to the bias of FL configurations; and (c) APR authors do not properly qualify their performance achievement with respect to the different tuning parameters implemented in APR systems.

SEDec 18, 2018
AVATAR : Fixing Semantic Bugs with Fix Patterns of Static Analysis Violations

Kui Liu, Anil Koyuncu, Dongsun Kim et al.

Fix pattern-based patch generation is a promising direction in Automated Program Repair (APR). Notably, it has been demonstrated to produce more acceptable and correct patches than the patches obtained with mutation operators through genetic programming. The performance of pattern-based APR systems, however, depends on the fix ingredients mined from fix changes in development histories. Unfortunately, collecting a reliable set of bug fixes in repositories can be challenging. In this paper, we propose to investigate the possibility in an APR scenario of leveraging code changes that address violations by static bug detection tools. To that end, we build the AVATAR APR system, which exploits fix patterns of static analysis violations as ingredients for patch generation. Evaluated on the Defects4J benchmark, we show that, assuming a perfect localization of faults, AVATAR can generate correct patches to fix 34/39 bugs. We further find that AVATAR yields performance metrics that are comparable to that of the closely-related approaches in the literature. While AVATAR outperforms many of the state-of-the-art pattern-based APR systems, it is mostly complementary to current approaches. Overall, our study highlights the relevance of static bug finding tools as indirect contributors of fix ingredients for addressing code defects identified with functional test cases.

SEDec 8, 2017
Mining Fix Patterns for FindBugs Violations

Kui Liu, Dongsun Kim, Tegawendé F. Bissyandé et al.

In this paper, we first collect and track a large number of fixed and unfixed violations across revisions of software. The empirical analyses reveal that there are discrepancies in the distributions of violations that are detected and those that are fixed, in terms of occurrences, spread and categories, which can provide insights into prioritizing violations. To automatically identify patterns in violations and their fixes, we propose an approach that utilizes convolutional neural networks to learn features and clustering to regroup similar instances. We then evaluate the usefulness of the identified fix patterns by applying them to unfixed violations. The results show that developers will accept and merge a majority (69/116) of fixes generated from the inferred fix patterns. It is also noteworthy that the yielded patterns are applicable to four real bugs in the Defects4J major benchmark for software testing and automated repair.