Ye Yuan

Tianfei Zhou, Wang Xia, Fei Zhang et al.

Image segmentation is a long-standing challenge in computer vision, studied continuously over several decades, as evidenced by seminal algorithms such as N-Cut, FCN, and MaskFormer. With the advent of foundation models (FMs), contemporary segmentation methodologies have embarked on a new epoch by either adapting FMs (e.g., CLIP, Stable Diffusion, DINO) for image segmentation or developing dedicated segmentation foundation models (e.g., SAM). These approaches not only deliver superior segmentation performance, but also herald newfound segmentation capabilities previously unseen in deep learning context. However, current research in image segmentation lacks a detailed analysis of distinct characteristics, challenges, and solutions associated with these advancements. This survey seeks to fill this gap by providing a thorough review of cutting-edge research centered around FM-driven image segmentation. We investigate two basic lines of research -- generic image segmentation (i.e., semantic segmentation, instance segmentation, panoptic segmentation), and promptable image segmentation (i.e., interactive segmentation, referring segmentation, few-shot segmentation) -- by delineating their respective task settings, background concepts, and key challenges. Furthermore, we provide insights into the emergence of segmentation knowledge from FMs like CLIP, Stable Diffusion, and DINO. An exhaustive overview of over 300 segmentation approaches is provided to encapsulate the breadth of current research efforts. Subsequently, we engage in a discussion of open issues and potential avenues for future research. We envisage that this fresh, comprehensive, and systematic survey catalyzes the evolution of advanced image segmentation systems. A public website is created to continuously track developments in this fast advancing field: \url{https://github.com/stanley-313/ImageSegFM-Survey}.

Zuogon Yue, Johan Thunberg, Lennart Ljung et al.

Network reconstruction of dynamical continuous-time (CT) systems is motivated by applications in many fields. Due to experimental limitations, especially in biology, data could be sampled at low frequencies, leading to significant challenges in network inference. We introduce the concept of "system aliasing" and characterize the minimal sampling frequency that allows reconstruction of CT systems from low sampled data. A test criterion is also proposed to check whether system aliasing is presented. With no system aliasing, the paper provides an algorithm to reconstruct dynamic network from data in the presence of noise. In addition, when there is system aliasing we perform studies that add additional prior information of the system such as sparsity. This paper opens new directions in modelling of network systems where samples have significant costs. Such tools are essential to process the available data in applications subject to current experimental limitations.

Jiefeng Li, Ye Yuan, Davis Rempe et al.

Estimating global human motion from moving cameras is challenging due to the entanglement of human and camera motions. To mitigate the ambiguity, existing methods leverage learned human motion priors, which however often result in oversmoothed motions with misaligned 2D projections. To tackle this problem, we propose COIN, a control-inpainting motion diffusion prior that enables fine-grained control to disentangle human and camera motions. Although pre-trained motion diffusion models encode rich motion priors, we find it non-trivial to leverage such knowledge to guide global motion estimation from RGB videos. COIN introduces a novel control-inpainting score distillation sampling method to ensure well-aligned, consistent, and high-quality motion from the diffusion prior within a joint optimization framework. Furthermore, we introduce a new human-scene relation loss to alleviate the scale ambiguity by enforcing consistency among the humans, camera, and scene. Experiments on three challenging benchmarks demonstrate the effectiveness of COIN, which outperforms the state-of-the-art methods in terms of global human motion estimation and camera motion estimation. As an illustrative example, COIN outperforms the state-of-the-art method by 33% in world joint position error (W-MPJPE) on the RICH dataset.

J. Jin, Y. Yuan, A. Webb et al.

Increasing attention has recently been given to the inference of sparse networks. In biology, for example, most molecules only bind to a small number of other molecules, leading to sparse molecular interaction networks. To achieve sparseness, a common approach consists of applying weighted penalties to the number of links between nodes in the network and the complexity of the dynamics of existing links. The selection of proper weights, however, is non-trivial. Alternatively, this paper proposes a novel data-driven method, called GESBL, that is able to penalise both network sparsity and model complexity without any tuning. GESBL combines Sparse Bayesian Learning (SBL) and Group Sparse Bayesian Learning (GSBL) to introduce penalties for complexity, both in terms of element (system order of nonzero connections) and group sparsity (network topology). The paper considers a class of sparse linear time-invariant networks where the dynamics are represented by multivariable ARX models. Data generated from sparse random ARX networks and synthetic gene regulatory networks indicate that our method, on average, considerably outperforms existing state-of-the-art methods. The proposed method can be applied to a wide range of fields, from systems biology applications in signalling and genetic regulatory networks to power systems.

Ye Yuan, Guy-Bart Stan, Sean Warnick et al.

Network reconstruction, i.e., obtaining network structure from data, is a central theme in systems biology, economics and engineering. In some previous work, we introduced dynamical structure functions as a tool for posing and solving the problem of network reconstruction between measured states. While recovering the network structure between hidden states is not possible since they are not measured, in many situations it is important to estimate the minimal number of hidden states in order to understand the complexity of the network under investigation and help identify potential targets for measurements. Estimating the minimal number of hidden states is also crucial to obtain the simplest state-space model that captures the network structure and is coherent with the measured data. This paper characterizes minimal order state-space realizations that are consistent with a given dynamical structure function by exploring properties of dynamical structure functions and developing an algorithm to explicitly obtain such a minimal realization.

Zhengyi Luo, Ye Yuan, Tingwu Wang et al.

Despite the rise of billion-parameter foundation models trained across thousands of GPUs, similar scaling gains have not been shown for humanoid control. Current neural controllers for humanoids remain modest in size, target a limited behavior set, and are trained on a handful of GPUs over several days. We show that scaling up model capacity, data, and compute yields a generalist humanoid controller capable of creating natural and robust whole-body movements. Specifically, we posit motion tracking as a natural and scalable task for humanoid control, leverageing dense supervision from diverse motion-capture data to acquire human motion priors without manual reward engineering. We build a foundation model for motion tracking by scaling along three axes: network size (from 1.2M to 42M parameters), dataset volume (over 100M frames, 700 hours of high-quality motion data), and compute (9k GPU hours). Beyond demonstrating the benefits of scale, we show the practical utility of our model through two mechanisms: (1) a real-time universal kinematic planner that bridges motion tracking to downstream task execution, enabling natural and interactive control, and (2) a unified token space that supports various motion input interfaces, such as VR teleoperation devices, human videos, and vision-language-action (VLA) models, all using the same policy. Scaling motion tracking exhibits favorable properties: performance improves steadily with increased compute and data diversity, and learned representations generalize to unseen motions, establishing motion tracking at scale as a practical foundation for humanoid control.

Kaituo Feng, Yikun Miao, Changsheng Li et al.

Knowledge distillation (KD) has shown to be effective to boost the performance of graph neural networks (GNNs), where the typical objective is to distill knowledge from a deeper teacher GNN into a shallower student GNN. However, it is often quite challenging to train a satisfactory deeper GNN due to the well-known over-parametrized and over-smoothing issues, leading to invalid knowledge transfer in practical applications. In this paper, we propose the first Free-direction Knowledge Distillation framework via reinforcement learning for GNNs, called FreeKD, which is no longer required to provide a deeper well-optimized teacher GNN. Our core idea is to collaboratively learn two shallower GNNs to exchange knowledge between them. As we observe that one typical GNN model often exhibits better and worse performances at different nodes during training, we devise a dynamic and free-direction knowledge transfer strategy that involves two levels of actions: 1) node-level action determines the directions of knowledge transfer between the corresponding nodes of two networks; and then 2) structure-level action determines which of the local structures generated by the node-level actions to be propagated. Additionally, considering that different augmented graphs can potentially capture distinct perspectives of the graph data, we propose FreeKD-Prompt that learns undistorted and diverse augmentations based on prompt learning for exchanging varied knowledge. Furthermore, instead of confining knowledge exchange within two GNNs, we develop FreeKD++ to enable free-direction knowledge transfer among multiple GNNs. Extensive experiments on five benchmark datasets demonstrate our approaches outperform the base GNNs in a large margin. More surprisingly, our FreeKD has comparable or even better performance than traditional KD algorithms that distill knowledge from a deeper and stronger teacher GNN.

Peng Xu, Shengwu Xiong, Jiajun Zhang et al.

This paper reviews the MARS2 2025 Challenge on Multimodal Reasoning. We aim to bring together different approaches in multimodal machine learning and LLMs via a large benchmark. We hope it better allows researchers to follow the state-of-the-art in this very dynamic area. Meanwhile, a growing number of testbeds have boosted the evolution of general-purpose large language models. Thus, this year's MARS2 focuses on real-world and specialized scenarios to broaden the multimodal reasoning applications of MLLMs. Our organizing team released two tailored datasets Lens and AdsQA as test sets, which support general reasoning in 12 daily scenarios and domain-specific reasoning in advertisement videos, respectively. We evaluated 40+ baselines that include both generalist MLLMs and task-specific models, and opened up three competition tracks, i.e., Visual Grounding in Real-world Scenarios (VG-RS), Visual Question Answering with Spatial Awareness (VQA-SA), and Visual Reasoning in Creative Advertisement Videos (VR-Ads). Finally, 76 teams from the renowned academic and industrial institutions have registered and 40+ valid submissions (out of 1200+) have been included in our ranking lists. Our datasets, code sets (40+ baselines and 15+ participants' methods), and rankings are publicly available on the MARS2 workshop website and our GitHub organization page https://github.com/mars2workshop/, where our updates and announcements of upcoming events will be continuously provided.

Zeyuan Yin, Ye Yuan, Panfeng Guo et al.

Edge devices in federated learning usually have much more limited computation and communication resources compared to servers in a data center. Recently, advanced model compression methods, like the Lottery Ticket Hypothesis, have already been implemented on federated learning to reduce the model size and communication cost. However, Backdoor Attack can compromise its implementation in the federated learning scenario. The malicious edge device trains the client model with poisoned private data and uploads parameters to the center, embedding a backdoor to the global shared model after unwitting aggregative optimization. During the inference phase, the model with backdoors classifies samples with a certain trigger as one target category, while shows a slight decrease in inference accuracy to clean samples. In this work, we empirically demonstrate that Lottery Ticket models are equally vulnerable to backdoor attacks as the original dense models, and backdoor attacks can influence the structure of extracted tickets. Based on tickets' similarities between each other, we provide a feasible defense for federated learning against backdoor attacks on various datasets.

Yanglan Ou, Yuan Xue, Ye Yuan et al.

Cervical cancer is the second most prevalent cancer affecting women today. As the early detection of cervical carcinoma relies heavily upon screening and pre-clinical testing, digital cervicography has great potential as a primary or auxiliary screening tool, especially in low-resource regions due to its low cost and easy access. Although an automated cervical dysplasia detection system has been desirable, traditional fully-supervised training of such systems requires large amounts of annotated data which are often labor-intensive to collect. To alleviate the need for much manual annotation, we propose a novel graph convolutional network (GCN) based semi-supervised classification model that can be trained with fewer annotations. In existing GCNs, graphs are constructed with fixed features and can not be updated during the learning process. This limits their ability to exploit new features learned during graph convolution. In this paper, we propose a novel and more flexible GCN model with a feature encoder that adaptively updates the adjacency matrix during learning and demonstrate that this model design leads to improved performance. Our experimental results on a cervical dysplasia classification dataset show that the proposed framework outperforms previous methods under a semi-supervised setting, especially when the labeled samples are scarce.

Ye Yuan, Junlin Li, Liang Li et al.

The study presents a general framework for discovering underlying Partial Differential Equations (PDEs) using measured spatiotemporal data. The method, called Sparse Spatiotemporal System Discovery ($\text{S}^3\text{d}$), decides which physical terms are necessary and which can be removed (because they are physically negligible in the sense that they do not affect the dynamics too much) from a pool of candidate functions. The method is built on the recent development of Sparse Bayesian Learning; which enforces the sparsity in the to-be-identified PDEs, and therefore can balance the model complexity and fitting error with theoretical guarantees. Without leveraging prior knowledge or assumptions in the discovery process, we use an automated approach to discover ten types of PDEs, including the famous Navier-Stokes and sine-Gordon equations, from simulation data alone. Moreover, we demonstrate our data-driven discovery process with the Complex Ginzburg-Landau Equation (CGLE) using data measured from a traveling-wave convection experiment. Our machine discovery approach presents solutions that has the potential to inspire, support and assist physicists for the establishment of physical laws from measured spatiotemporal data, especially in notorious fields that are often too complex to allow a straightforward establishment of physical law, such as biophysics, fluid dynamics, neuroscience or nonlinear optics.

Wenqian Jiang, Cheng Cheng, Beitong Zhou et al.

This paper proposes a novel fault diagnosis approach based on generative adversarial networks (GAN) for imbalanced industrial time series where normal samples are much larger than failure cases. We combine a well-designed feature extractor with GAN to help train the whole network. Aimed at obtaining data distribution and hidden pattern in both original distinguishing features and latent space, the encoder-decoder-encoder three-sub-network is employed in GAN, based on Deep Convolution Generative Adversarial Networks (DCGAN) but without Tanh activation layer and only trained on normal samples. In order to verify the validity and feasibility of our approach, we test it on rolling bearing data from Case Western Reserve University and further verify it on data collected from our laboratory. The results show that our proposed approach can achieve excellent performance in detecting faulty by outputting much larger evaluation scores.

Cheng Cheng, Beitong Zhou, Guijun Ma et al.

The demand of artificial intelligent adoption for condition-based maintenance strategy is astonishingly increased over the past few years. Intelligent fault diagnosis is one critical topic of maintenance solution for mechanical systems. Deep learning models, such as convolutional neural networks (CNNs), have been successfully applied to fault diagnosis tasks for mechanical systems and achieved promising results. However, for diverse working conditions in the industry, deep learning suffers two difficulties: one is that the well-defined (source domain) and new (target domain) datasets are with different feature distributions; another one is the fact that insufficient or no labelled data in target domain significantly reduce the accuracy of fault diagnosis. As a novel idea, deep transfer learning (DTL) is created to perform learning in the target domain by leveraging information from the relevant source domain. Inspired by Wasserstein distance of optimal transport, in this paper, we propose a novel DTL approach to intelligent fault diagnosis, namely Wasserstein Distance based Deep Transfer Learning (WD-DTL), to learn domain feature representations (generated by a CNN based feature extractor) and to minimize the distributions between the source and target domains through adversarial training. The effectiveness of the proposed WD-DTL is verified through 3 transfer scenarios and 16 transfer fault diagnosis experiments of both unsupervised and supervised (with insufficient labelled data) learning. We also provide a comprehensive analysis of the network visualization of those transfer tasks.

Ye Yuan, Guijun Ma, Cheng Cheng et al.

The manufacturing sector is envisioned to be heavily influenced by artificial intelligence-based technologies with the extraordinary increases in computational power and data volumes. A central challenge in manufacturing sector lies in the requirement of a general framework to ensure satisfied diagnosis and monitoring performances in different manufacturing applications. Here we propose a general data-driven, end-to-end framework for the monitoring of manufacturing systems. This framework, derived from deep learning techniques, evaluates fused sensory measurements to detect and even predict faults and wearing conditions. This work exploits the predictive power of deep learning to automatically extract hidden degradation features from noisy, time-course data. We have experimented the proposed framework on ten representative datasets drawn from a wide variety of manufacturing applications. Results reveal that the framework performs well in examined benchmark applications and can be applied in diverse contexts, indicating its potential use as a critical corner stone in smart manufacturing.

Cheng Cheng, Guijun Ma, Yong Zhang et al.

In industrial applications, nearly half the failures of motors are caused by the degradation of rolling element bearings (REBs). Therefore, accurately estimating the remaining useful life (RUL) for REBs are of crucial importance to ensure the reliability and safety of mechanical systems. To tackle this challenge, model-based approaches are often limited by the complexity of mathematical modeling. Conventional data-driven approaches, on the other hand, require massive efforts to extract the degradation features and construct health index. In this paper, a novel online data-driven framework is proposed to exploit the adoption of deep convolutional neural networks (CNN) in predicting the RUL of bearings. More concretely, the raw vibrations of training bearings are first processed using the Hilbert-Huang transform (HHT) and a novel nonlinear degradation indicator is constructed as the label for learning. The CNN is then employed to identify the hidden pattern between the extracted degradation indicator and the vibration of training bearings, which makes it possible to estimate the degradation of the test bearings automatically. Finally, testing bearings' RULs are predicted by using a $ε$-support vector regression model. The superior performance of the proposed RUL estimation framework, compared with the state-of-the-art approaches, is demonstrated through the experimental results. The generality of the proposed CNN model is also validated by transferring to bearings undergoing different operating conditions.

J. Jin, Y. Yuan, W. Pan et al.

This paper begins with considering the identification of sparse linear time-invariant networks described by multivariable ARX models. Such models possess relatively simple structure thus used as a benchmark to promote further research. With identifiability of the network guaranteed, this paper presents an identification method that infers both the Boolean structure of the network and the internal dynamics between nodes. Identification is performed directly from data without any prior knowledge of the system, including its order. The proposed method solves the identification problem using Maximum a posteriori estimation (MAP) but with inseparable penalties for complexity, both in terms of element (order of nonzero connections) and group sparsity (network topology). Such an approach is widely applied in Compressive Sensing (CS) and known as Sparse Bayesian Learning (SBL). We then propose a novel scheme that combines sparse Bayesian and group sparse Bayesian to efficiently solve the problem. The resulted algorithm has a similar form of the standard Sparse Group Lasso (SGL) while with known noise variance, it simplifies to exact re-weighted SGL. The method and the developed toolbox can be applied to infer networks from a wide range of fields, including systems biology applications such as signaling and genetic regulatory networks.

Ye Yuan, Mu Li, Jun Liu et al.

We propose a new method to accelerate the convergence of optimization algorithms. This method simply adds a power coefficient $γ\in[0,1)$ to the gradient during optimization. We call this the Powerball method and analyze the convergence rate for the Powerball method for strongly convex functions. While theoretically the Powerball method is guaranteed to have a linear convergence rate in the same order of the gradient method, we show that empirically it significantly outperforms the gradient descent and Newton's method, especially during the initial iterations. We demonstrate that the Powerball method provides a $10$-fold speedup of the convergence of both gradient descent and L-BFGS on multiple real datasets.

Wei Pan, Ye Yuan, Lennart Ljung et al.

In this paper, we propose a new method to identify biochemical reaction networks (i.e. both reactions and kinetic parameters) from heterogeneous datasets. Such datasets can contain (a) data from several replicates of an experiment performed on a biological system; (b) data measured from a biochemical network subjected to different experimental conditions, for example, changes/perturbations in biological inductions, temperature, gene knock-out, gene over-expression, etc. Simultaneous integration of various datasets to perform system identification has the potential to avoid non-identifiability issues typically arising when only single datasets are used.

David Hayden, Ye Yuan, Jorge Goncalves

This paper considers the problem of inferring an unknown network of dynamical systems driven by unknown, intrinsic, noise inputs. Equivalently we seek to identify direct causal dependencies among manifest variables only from observations of these variables. For linear, time-invariant systems of minimal order, we characterise under what conditions this problem is well posed. We first show that if the transfer matrix from the inputs to manifest states is minimum phase, this problem has a unique solution irrespective of the network topology. This is equivalent to there being only one valid spectral factor (up to a choice of signs of the inputs) of the output spectral density. If the assumption of phase-minimality is relaxed, we show that the problem is characterised by a single Algebraic Riccati Equation (ARE), of dimension determined by the number of latent states. The number of solutions to this ARE is an upper bound on the number of solutions for the network. We give necessary and sufficient conditions for any two dynamical networks to have equal output spectral density, which can be used to construct all equivalent networks. Extensive simulations quantify the number of solutions for a range of problem sizes. For a slightly simpler case, we also provide an algorithm to construct all equivalent networks from the output spectral density.