Minghao Yang

Minghao Yang, Ren Togo, Guang Li et al.

Mixture-of-Experts (MoE) models scale neural networks by conditionally activating a small subset of experts, where the router plays a central role in determining expert specialization and overall model performance. However, many modern MoE systems still adopt linear routers in raw high-dimensional representation spaces, where representation mismatch, angular concentration, and scale-sensitive scoring can jointly undermine routing discriminability and stable expert specialization. In this work, we propose Low-rank \& Lipschitz-controlled Routing (L2R), a unified routing framework that reshapes both the routing space and scoring geometry. L2R performs expert assignment in a shared low-rank latent routing space and introduces Saturated Inner-Product Scoring (SIPS) to explicitly control the Lipschitz behavior of routing functions, yielding smoother and more stable routing geometry. In addition, L2R incorporates a parameter-efficient multi-anchor routing mechanism to enhance expert expressiveness. Extensive experiments on a large-scale language MoE model and a vision MoE setting on ImageNet demonstrate that L2R consistently improves routing stability, expert specialization, and overall model performance.

Xiaoyu Tan, Tianchu Yao, Chao Qu et al.

The reasoning capabilities of advanced large language models (LLMs) like o1 have revolutionized artificial intelligence applications. Nevertheless, evaluating and optimizing complex reasoning processes remain significant challenges due to diverse policy distributions and the inherent limitations of human effort and accuracy. In this paper, we present AURORA, a novel automated framework for training universal process reward models (PRMs) using ensemble prompting and reverse verification. The framework employs a two-phase approach: First, it uses diverse prompting strategies and ensemble methods to perform automated annotation and evaluation of processes, ensuring robust assessments for reward learning. Second, it leverages practical reference answers for reverse verification, enhancing the model's ability to validate outputs and improving training accuracy. To assess the framework's performance, we extend beyond the existing ProcessBench benchmark by introducing UniversalBench, which evaluates reward predictions across full trajectories under diverse policy distribtion with long Chain-of-Thought (CoT) outputs. Experimental results demonstrate that AURORA enhances process evaluation accuracy, improves PRMs' accuracy for diverse policy distributions and long-CoT responses. The project will be open-sourced at https://auroraprm.github.io/. The Universal-PRM-7B is available at https://huggingface.co/infly/Universal-PRM-7B.

Zhenchao Tang, Fang Wang, Haohuai He et al.

Effective post-training is essential to align Large Language Models (LLMs) with specialized biomedical knowledge to accelerate life science research. However, current approaches face significant limitations. First, biomedical reasoning involves intricate mechanisms often represented by sparse textual data. Standard Supervised Fine-Tuning (SFT) tends to overfit to surface-level instruction patterns without effectively internalizing this fragmented scientific knowledge. Second, Reinforcement Learning (RL) is impractical for this domain, as defining meaningful rewards often necessitates prohibitive experimental validation (e.g., wet-lab verification of drug responses), rendering real-time feedback unfeasible. We propose Balanced Fine-Tuning (BFT), an efficient post-training method designed to learn complex reasoning from sparse data without external reward signals. BFT operates through a two-layer weighting mechanism: 1. At the token level, it scales loss via prediction probabilities to stabilize gradients and prevent overfitting; 2. At the sample level, it uses "minimum group confidence" to adaptively enhance the learning of hard samples. Experiments demonstrate that BFT significantly outperforms SFT. In medical tasks, it enables LLMs to acquire knowledge that SFT misses. In biological tasks, BFT-based LLMs surpass GeneAgent (an accurate agent for biology analysis) in biological process reasoning. Moreover, the text embeddings generated by BFT can be directly applied to downstream tasks, such as gene interaction and single-cell perturbation response prediction. These results indicate that BFT facilitates broad applications of LLMs in biomedical research.

Pengfei Zhang, Zhihang Zheng, Shichen Zhang et al.

Compared with invasive examinations that require tissue sampling, respiratory sound testing is a non-invasive examination method that is safer and easier for patients to accept. In this study, we introduce Rene, a pioneering large-scale model tailored for respiratory sound recognition. Rene has been rigorously fine-tuned with an extensive dataset featuring a broad array of respiratory audio samples, targeting disease detection, sound pattern classification, and event identification. Our innovative approach applies a pre-trained speech recognition model to process respiratory sounds, augmented with patient medical records. The resulting multi-modal deep-learning framework addresses interpretability and real-time diagnostic challenges that have hindered previous respiratory-focused models. Benchmark comparisons reveal that Rene significantly outperforms existing models, achieving improvements of 10.27%, 16.15%, 15.29%, and 18.90% in respiratory event detection and audio classification on the SPRSound database. Disease prediction accuracy on the ICBHI database improved by 23% over the baseline in both mean average and harmonic scores. Moreover, we have developed a real-time respiratory sound discrimination system utilizing the Rene architecture. Employing state-of-the-art Edge AI technology, this system enables rapid and accurate responses for respiratory sound auscultation(https://github.com/zpforlove/Rene).

Haonan He, Yuchen Ren, Yining Tang et al.

Large language models (LLMs) have shown remarkable capabilities in general domains, but their application to multi-omics biology remains underexplored. To address this gap, we introduce Biology-Instructions, the first large-scale instruction-tuning dataset for multi-omics biological sequences, including DNA, RNA, proteins, and multi-molecules. This dataset bridges LLMs and complex biological sequence-related tasks, enhancing their versatility and reasoning while maintaining conversational fluency. We also highlight significant limitations of current state-of-the-art LLMs on multi-omics tasks without specialized training. To overcome this, we propose ChatMultiOmics, a strong baseline with a novel three-stage training pipeline, demonstrating superior biological understanding through Biology-Instructions. Both resources are publicly available, paving the way for better integration of LLMs in multi-omics analysis. The Biology-Instructions is publicly available at: https://github.com/hhnqqq/Biology-Instructions.

Yuan Tian, Qin Wang, Zhiwu Huang et al.

In this paper, we introduce a new reinforcement learning (RL) based neural architecture search (NAS) methodology for effective and efficient generative adversarial network (GAN) architecture search. The key idea is to formulate the GAN architecture search problem as a Markov decision process (MDP) for smoother architecture sampling, which enables a more effective RL-based search algorithm by targeting the potential global optimal architecture. To improve efficiency, we exploit an off-policy GAN architecture search algorithm that makes efficient use of the samples generated by previous policies. Evaluation on two standard benchmark datasets (i.e., CIFAR-10 and STL-10) demonstrates that the proposed method is able to discover highly competitive architectures for generally better image generation results with a considerably reduced computational burden: 7 GPU hours. Our code is available at https://github.com/Yuantian013/E2GAN.

Pengfei Zhang, Tianxin Xie, Minghao Yang et al.

REPresentation Alignment (REPA) improves the training of generative flow models by aligning intermediate hidden states with pretrained teacher features, but its effectiveness in token-conditioned audio Flow Matching critically depends on the choice of supervised layers, which is typically made heuristically based on the depth. In this work, we introduce Attribution-Guided REPresentation Alignment (AG-REPA), a novel causal layer selection strategy for representation alignment in audio Flow Matching. Firstly, we find that layers that best store semantic/acoustic information (high teacher-space similarity) are not necessarily the layers that contribute most to the velocity field that drives generation, and we call it Store-Contribute Dissociation (SCD). To turn this insight into an actionable training guidance, we propose a forward-only gate ablation (FoG-A) that quantifies each layer's causal contribution via the induced change in the predicted velocity field, enabling sparse layer selection and adaptive weighting for alignment. Across unified speech and general-audio training (LibriSpeech + AudioSet) under different token-conditioning topologies, AG-REPA consistently outperforms REPA baselines. Overall, our results show that alignment is most effective when applied to the causally dominant layers that drive the velocity field, rather than to layers that are representationally rich but functionally passive.

Zhaofan Zhang, Minghao Yang, Rufeng Chen et al.

Quantile-based distributional reinforcement learning methods learn return distributions through sampled quantile regression, but their bootstrapped target quantiles may induce distorted or degenerate distribution estimates. We propose Robust Quantile-based Implicit Quantile Networks (RQIQN), a lightweight Wasserstein distributionally robust enhancement boosted from a quantile estimation perspective. We first reinterpret a snapshot of IQN loss as a collection of local empirical quantile estimation problems over sampled current fractions. We then robustify each local slot with a Wasserstein distributionally robust quantile estimation formulation, yielding a closed-form, fraction-dependent correction to the Bellman target. This correction directly addresses distributional degeneration: its median antisymmetry preserves the risk-neutral quantile average, while its monotonicity enlarges upper-lower quantile gaps and counteracts collapsed distributional spread. RQIQN thus regularizes quantile geometry without changing the underlying value objective or requiring additional sample set reconstruction. Finally, we empirically show that the proposed RQIQN outperforms other existing quantile-based distributional reinforcement learning algorithms in risk-sensitive navigation and Atari games.

Junyu Hao, Jianheng Liu, Yongjia Zhao et al.

When presented with one or a few photos of a previously unseen object, humans can instantly recognize it in different scenes. Although the human brain mechanism behind this phenomenon is still not fully understood, this work introduces a novel technical realization of this task. It consists of two phases: (1) generating a Similarity Density Map (SDM) by convolving the scene image with the given object image patch(es) so that the highlight areas in the SDM indicate the possible locations; (2) obtaining the object occupied areas in the scene through a Region Alignment Network (RAN). The RAN is constructed on a backbone of Deep Siamese Network (DSN), and different from the traditional DSNs, it aims to obtain the object accurate regions by regressing the location and area differences between the ground truths and the predicted ones indicated by the highlight areas in SDM. By pre-learning from labels annotated in traditional datasets, the SDM-RAN can detect previously unknown objects without fine-tuning. Experiments were conducted on the MS COCO, PASCAL VOC datasets. The results indicate that the proposed method outperforms state-of-the-art methods on the same task.

Minghao Yang, Ren Togo, Guang Li et al.

Mixture-of-Experts (MoE) has emerged as a powerful framework for multi-task learning (MTL). However, existing MoE-MTL methods often rely on single-task pretrained backbones and suffer from redundant adaptation and inefficient knowledge sharing during the transition from single-task to multi-task learning (STL to MTL). To address these limitations, we propose adaptive shared experts (ASE) within a low-rank adaptation (LoRA) based MoE, where shared experts are assigned router-computed gating weights jointly normalized with sparse experts. This design facilitates STL to MTL transition, enhances expert specialization, and cooperation. Furthermore, we incorporate fine-grained experts by increasing the number of LoRA experts while proportionally reducing their rank, enabling more effective knowledge sharing under a comparable parameter budget. Extensive experiments on the PASCAL-Context benchmark, under unified training settings, demonstrate that ASE consistently improves performance across diverse configurations and validates the effectiveness of fine-grained designs for MTL.

Minghao Yang, Pengteng Li, Yan Liang et al.

Deep learning techniques have driven significant progress in various analytical tasks within 3D genomics in computational biology. However, a holistic understanding of 3D genomics knowledge remains underexplored. Here, we propose MIX-HIC, the first multimodal foundation model of 3D genome that integrates both 3D genome structure and epigenomic tracks, which obtains unified and comprehensive semantics. For accurate heterogeneous semantic fusion, we design the cross-modal interaction and mapping blocks for robust unified representation, yielding the accurate aggregation of 3D genome knowledge. Besides, we introduce the first large-scale dataset comprising over 1 million pairwise samples of Hi-C contact maps and epigenomic tracks for high-quality pre-training, enabling the exploration of functional implications in 3D genomics. Extensive experiments show that MIX-HIC can significantly surpass existing state-of-the-art methods in diverse downstream tasks. This work provides a valuable resource for advancing 3D genomics research.

Minghao Yang, Zhi-An Huang, Zhihang Zheng et al.

Hi-C technology measures genome-wide interaction frequencies, providing a powerful tool for studying the 3D genomic structure within the nucleus. However, high sequencing costs and technical challenges often result in Hi-C data with limited coverage, leading to imprecise estimates of chromatin interaction frequencies. To address this issue, we present a novel deep learning-based method HiCMamba to enhance the resolution of Hi-C contact maps using a state space model. We adopt the UNet-based auto-encoder architecture to stack the proposed holistic scan block, enabling the perception of both global and local receptive fields at multiple scales. Experimental results demonstrate that HiCMamba outperforms state-of-the-art methods while significantly reducing computational resources. Furthermore, the 3D genome structures, including topologically associating domains (TADs) and loops, identified in the contact maps recovered by HiCMamba are validated through associated epigenomic features. Our work demonstrates the potential of a state space model as foundational frameworks in the field of Hi-C resolution enhancement.

Minghao Yang, Linlin Gao, Pengyuan Li et al.

Current structured pruning methods often result in considerable accuracy drops due to abrupt network changes and loss of information from pruned structures. To address these issues, we introduce the Decay Pruning Method (DPM), a novel smooth pruning approach with a self-rectifying mechanism. DPM consists of two key components: (i) Smooth Pruning: It converts conventional single-step pruning into multi-step smooth pruning, gradually reducing redundant structures to zero over N steps with ongoing optimization. (ii) Self-Rectifying: This procedure further enhances the aforementioned process by rectifying sub-optimal pruning based on gradient information. Our approach demonstrates strong generalizability and can be easily integrated with various existing pruning methods. We validate the effectiveness of DPM by integrating it with three popular pruning methods: OTOv2, Depgraph, and Gate Decorator. Experimental results show consistent improvements in performance compared to the original pruning methods, along with further reductions of FLOPs in most scenarios.

Hongpeng Zhou, Minghao Yang, Jun Wang et al.

One-Shot Neural Architecture Search (NAS) is a promising method to significantly reduce search time without any separate training. It can be treated as a Network Compression problem on the architecture parameters from an over-parameterized network. However, there are two issues associated with most one-shot NAS methods. First, dependencies between a node and its predecessors and successors are often disregarded which result in improper treatment over zero operations. Second, architecture parameters pruning based on their magnitude is questionable. In this paper, we employ the classic Bayesian learning approach to alleviate these two issues by modeling architecture parameters using hierarchical automatic relevance determination (HARD) priors. Unlike other NAS methods, we train the over-parameterized network for only one epoch then update the architecture. Impressively, this enabled us to find the architecture on CIFAR-10 within only 0.2 GPU days using a single GPU. Competitive performance can be also achieved by transferring to ImageNet. As a byproduct, our approach can be applied directly to compress convolutional neural networks by enforcing structural sparsity which achieves extremely sparse networks without accuracy deterioration.

Linlin Chao, Jianhua Tao, Minghao Yang et al.

This paper focuses on two key problems for audio-visual emotion recognition in the video. One is the audio and visual streams temporal alignment for feature level fusion. The other one is locating and re-weighting the perception attentions in the whole audio-visual stream for better recognition. The Long Short Term Memory Recurrent Neural Network (LSTM-RNN) is employed as the main classification architecture. Firstly, soft attention mechanism aligns the audio and visual streams. Secondly, seven emotion embedding vectors, which are corresponding to each classification emotion type, are added to locate the perception attentions. The locating and re-weighting process is also based on the soft attention mechanism. The experiment results on EmotiW2015 dataset and the qualitative analysis show the efficiency of the proposed two techniques.