11.0CGMay 20
Bifunction and Interlevel Delaunay TrifiltrationsÁngel Javier Alonso, Michael Kerber, Tung Lam et al.
A key property of the Delaunay filtration is that it is topologically (i.e., weakly) equivalent to the offset (union-of-balls) filtration. Recently, this filtration has been extended to point clouds equipped with an $\mathbb{R}$-valued function, yielding a computable 2-parameter filtration that satisfies an analogous weak equivalence. Motivated in part by the study of time-varying data, we introduce a 3-parameter extension of the Delaunay filtration for point clouds equipped with an $\mathbb{R}^2$-valued function, also satisfying an analogous weak equivalence. For a point cloud $X \subset \mathbb{R}^d$, our trifiltration has size $O\bigl(|X|^{\lceil(d+1)/2\rceil+1}\bigr)$. We present an algorithm that computes this trifiltration in time $O\bigl(|X|^{\lceil d/2\rceil+2}\bigr)$, together with an implementation. Our experiments demonstrate that implementation can handle thousands of points in $\mathbb{R}^3$, with memory growth that is nearly linear.
LGOct 13, 2023
Topological Data Analysis in smart manufacturing: State of the art and futuredirectionsMartin Uray, Barbara Giunti, Michael Kerber et al.
Topological Data Analysis (TDA) is a discipline that applies algebraic topology techniques to analyze complex, multi-dimensional data. Although it is a relatively new field, TDA has been widely and successfully applied across various domains, such as medicine, materials science, and biology. This survey provides an overview of the state of the art of TDA within a dynamic and promising application area: industrial manufacturing and production, particularly within the Industry 4.0 context. We have conducted a rigorous and reproducible literature search focusing on TDA applications in industrial production and manufacturing settings. The identified works are categorized based on their application areas within the manufacturing process and the types of input data. We highlight the principal advantages of TDA tools in this context, address the challenges encountered and the future potential of the field. Furthermore, we identify TDA methods that are currently underexploited in specific industrial areas and discuss how their application could be beneficial, with the aim of stimulating further research in this field. This work seeks to bridge the theoretical advancements in TDA with the practical needs of industrial production. Our goal is to serve as a guide for practitioners and researchers applying TDA in industrial production and manufacturing systems. We advocate for the untapped potential of TDA in this domain and encourage continued exploration and research.
3.8CGApr 9
Computing the Bottleneck Distance between Persistent Homology TransformsMichael Kerber, Elena Xinyi Wang
The Persistent Homology Transform (PHT) summarizes a shape in $\mathbb{R}^m$ by collecting persistence diagrams obtained from linear height filtrations in all directions on $\mathbb{S}^{m-1}$. It enjoys strong theoretical guarantees, including continuity, stability, and injectivity on broad classes of shapes. A natural way to compare two PHTs is to use the bottleneck distance between their diagrams as the direction varies. Prior work has either compared PHTs by sampling directions or, in 2D, computed the exact \textit{integral} of bottleneck distance over all angles via a kinetic data structure. We improve the integral objective to $\tilde O(n^5)$ in place of earlier $\tilde O(n^6)$ bound. For the \textit{max} objective, we give a $\tilde O(n^3)$ algorithm in $\mathbb{R}^2$ and a $\tilde O(n^5)$ algorithm in $\mathbb{R}^3$.
0.5CGMar 12
Topologically Stable Hough TransformStefan Huber, Kristóf Huszár, Michael Kerber et al.
We propose an alternative formulation of the well-known Hough transform to detect lines in point clouds. Replacing the discretized voting scheme of the classical Hough transform by a continuous score function, its persistent features in the sense of persistent homology give a set of candidate lines. We also devise and implement an algorithm to efficiently compute these candidate lines.
ATMay 23, 2024
Graphcode: Learning from multiparameter persistent homology using graph neural networksMichael Kerber, Florian Russold
We introduce graphcodes, a novel multi-scale summary of the topological properties of a dataset that is based on the well-established theory of persistent homology. Graphcodes handle datasets that are filtered along two real-valued scale parameters. Such multi-parameter topological summaries are usually based on complicated theoretical foundations and difficult to compute; in contrast, graphcodes yield an informative and interpretable summary and can be computed as efficient as one-parameter summaries. Moreover, a graphcode is simply an embedded graph and can therefore be readily integrated in machine learning pipelines using graph neural networks. We describe such a pipeline and demonstrate that graphcodes achieve better classification accuracy than state-of-the-art approaches on various datasets.
LGSep 26, 2018
A Kernel for Multi-Parameter Persistent HomologyRené Corbet, Ulderico Fugacci, Michael Kerber et al.
Topological data analysis and its main method, persistent homology, provide a toolkit for computing topological information of high-dimensional and noisy data sets. Kernels for one-parameter persistent homology have been established to connect persistent homology with machine learning techniques. We contribute a kernel construction for multi-parameter persistence by integrating a one-parameter kernel weighted along straight lines. We prove that our kernel is stable and efficiently computable, which establishes a theoretical connection between topological data analysis and machine learning for multivariate data analysis.