Gaoxiang Luo

Le Peng, Gaoxiang Luo, sicheng zhou et al.

Language models (LMs) such as BERT and GPT have revolutionized natural language processing (NLP). However, the medical field faces challenges in training LMs due to limited data access and privacy constraints imposed by regulations like the Health Insurance Portability and Accountability Act (HIPPA) and the General Data Protection Regulation (GDPR). Federated learning (FL) offers a decentralized solution that enables collaborative learning while ensuring data privacy. In this study, we evaluated FL on 2 biomedical NLP tasks encompassing 8 corpora using 6 LMs. Our results show that: 1) FL models consistently outperformed models trained on individual clients' data and sometimes performed comparably with models trained with polled data; 2) with the fixed number of total data, FL models training with more clients produced inferior performance but pre-trained transformer-based models exhibited great resilience. 3) FL models significantly outperformed large language models using zero-/one-shot learning and offered lightning inference speed.

Long Phan, Alice Gatti, Ziwen Han et al. · amazon-science, apple-ml

Benchmarks are important tools for tracking the rapid advancements in large language model (LLM) capabilities. However, benchmarks are not keeping pace in difficulty: LLMs now achieve over 90\% accuracy on popular benchmarks like MMLU, limiting informed measurement of state-of-the-art LLM capabilities. In response, we introduce Humanity's Last Exam (HLE), a multi-modal benchmark at the frontier of human knowledge, designed to be the final closed-ended academic benchmark of its kind with broad subject coverage. HLE consists of 2,500 questions across dozens of subjects, including mathematics, humanities, and the natural sciences. HLE is developed globally by subject-matter experts and consists of multiple-choice and short-answer questions suitable for automated grading. Each question has a known solution that is unambiguous and easily verifiable, but cannot be quickly answered via internet retrieval. State-of-the-art LLMs demonstrate low accuracy and calibration on HLE, highlighting a significant gap between current LLM capabilities and the expert human frontier on closed-ended academic questions. To inform research and policymaking upon a clear understanding of model capabilities, we publicly release HLE at https://lastexam.ai.

Le Peng, Hengyue Liang, Gaoxiang Luo et al.

Transfer learning (TL) from pretrained deep models is a standard practice in modern medical image classification (MIC). However, what levels of features to be reused are problem-dependent, and uniformly finetuning all layers of pretrained models may be suboptimal. This insight has partly motivated the recent differential TL strategies, such as TransFusion (TF) and layer-wise finetuning (LWFT), which treat the layers in the pretrained models differentially. In this paper, we add one more strategy into this family, called TruncatedTL, which reuses and finetunes appropriate bottom layers and directly discards the remaining layers. This yields not only superior MIC performance but also compact models for efficient inference, compared to other differential TL methods. Our code is available at: https://github.com/sun-umn/TTL

Gaoxiang Luo, Aryan Deshwal

Selecting an optimal set of exemplars is critical for good performance of in-context learning. However, prior exemplar search methods narrowly optimize for predictive accuracy, critically neglecting model calibration--a key determinant of trustworthiness and safe deployment. In this paper, we formulate exemplar selection as a multi-objective optimization problem, explicitly targeting both the maximization of predictive accuracy and the minimization of expected calibration error. We solve this problem with a sample-efficient Combinatorial Bayesian Optimization algorithm (COM-BOM) to find the Pareto front that optimally trades off the two objectives of accuracy and calibration. We evaluate COM-BOM on multiple tasks from unsaturated MMLU-Pro benchmark and find that COM-BOM beats or matches the baselines at jointly optimizing the two objectives, while requiring a minimal number of LLM API calls.

Majid Farhadloo, Carl Molnar, Gaoxiang Luo et al.

The goal of spatial-configuration-based classification is to build a classifier to distinguish two classes (e.g., responder, non-responder) based on the spatial arrangements (e.g., spatial interactions between different point categories) given multi-category point data from two classes. This problem is important for generating hypotheses in medical pathology towards discovering new immunotherapies for cancer treatment as well as for other applications in biomedical research and microbial ecology. This problem is challenging due to an exponential number of category subsets which may vary in the strength of spatial interactions. Most prior efforts on using human selected spatial association measures may not be sufficient for capturing the relevant (e.g., surrounded by) spatial interactions which may be of biological significance. In addition, the related deep neural networks are limited to category pairs and do not explore larger subsets of point categories. To overcome these limitations, we propose a Spatial-interaction Aware Multi-Category deep neural Network (SAMCNet) architecture and contribute novel local reference frame characterization and point pair prioritization layers for spatial-configuration-based classification. Extensive experimental results on multiple cancer datasets show that the proposed architecture provides higher prediction accuracy over baseline methods.

Jayant Gupta, Carl Molnar, Gaoxiang Luo et al.

Given Spatial Variability Aware Neural Networks (SVANNs), the goal is to investigate mathematical (or computational) models for comparative physical interpretation towards their transparency (e.g., simulatibility, decomposability and algorithmic transparency). This problem is important due to important use-cases such as reusability, debugging, and explainability to a jury in a court of law. Challenges include a large number of model parameters, vacuous bounds on generalization performance of neural networks, risk of overfitting, sensitivity to noise, etc., which all detract from the ability to interpret the models. Related work on either model-specific or model-agnostic post-hoc interpretation is limited due to a lack of consideration of physical constraints (e.g., mass balance) and properties (e.g., second law of geography). This work investigates physical interpretation of SVANNs using novel comparative approaches based on geographically heterogeneous features. The proposed approach on feature-based physical interpretation is evaluated using a case-study on wetland mapping. The proposed physical interpretation improves the transparency of SVANN models and the analytical results highlight the trade-off between model transparency and model performance (e.g., F1-score). We also describe an interpretation based on geographically heterogeneous processes modeled as partial differential equations (PDEs).