Emilie Chouzenoux

Ségolène Martin, Malik Boudiaf, Emilie Chouzenoux et al.

Standard few-shot benchmarks are often built upon simplifying assumptions on the query sets, which may not always hold in practice. In particular, for each task at testing time, the classes effectively present in the unlabeled query set are known a priori, and correspond exactly to the set of classes represented in the labeled support set. We relax these assumptions and extend current benchmarks, so that the query-set classes of a given task are unknown, but just belong to a much larger set of possible classes. Our setting could be viewed as an instance of the challenging yet practical problem of extremely imbalanced K-way classification, K being much larger than the values typically used in standard benchmarks, and with potentially irrelevant supervision from the support set. Expectedly, our setting incurs drops in the performances of state-of-the-art methods. Motivated by these observations, we introduce a PrimAl Dual Minimum Description LEngth (PADDLE) formulation, which balances data-fitting accuracy and model complexity for a given few-shot task, under supervision constraints from the support set. Our constrained MDL-like objective promotes competition among a large set of possible classes, preserving only effective classes that befit better the data of a few-shot task. It is hyperparameter free, and could be applied on top of any base-class training. Furthermore, we derive a fast block coordinate descent algorithm for optimizing our objective, with convergence guarantee, and a linear computational complexity at each iteration. Comprehensive experiments over the standard few-shot datasets and the more realistic and challenging i-Nat dataset show highly competitive performances of our method, more so when the numbers of possible classes in the tasks increase. Our code is publicly available at https://github.com/SegoleneMartin/PADDLE.

Marion Savanier, Emilie Chouzenoux, Jean-Christophe Pesquet et al.

This paper presents a new method for reconstructing regions of interest (ROI) from a limited number of computed tomography (CT) measurements. Classical model-based iterative reconstruction methods lead to images with predictable features. Still, they often suffer from tedious parameterization and slow convergence. On the contrary, deep learning methods are fast, and they can reach high reconstruction quality by leveraging information from large datasets, but they lack interpretability. At the crossroads of both methods, deep unfolding networks have been recently proposed. Their design includes the physics of the imaging system and the steps of an iterative optimization algorithm. Motivated by the success of these networks for various applications, we introduce an unfolding neural network called U-RDBFB designed for ROI CT reconstruction from limited data. Few-view truncated data are effectively handled thanks to a robust non-convex data fidelity term combined with a sparsity-inducing regularization function. We unfold the Dual Block coordinate Forward-Backward (DBFB) algorithm, embedded in an iterative reweighted scheme, allowing the learning of key parameters in a supervised manner. Our experiments show an improvement over several state-of-the-art methods, including a model-based iterative scheme, a multi-scale deep learning architecture, and other deep unfolding methods.

Stuti Jain, Emilie Chouzenoux, Kriti Kumar et al.

Co-administration of two or more drugs simultaneously can result in adverse drug reactions. Identifying drug-drug interactions (DDIs) is necessary, especially for drug development and for repurposing old drugs. DDI prediction can be viewed as a matrix completion task, for which matrix factorization (MF) appears as a suitable solution. This paper presents a novel Graph Regularized Probabilistic Matrix Factorization (GRPMF) method, which incorporates expert knowledge through a novel graph-based regularization strategy within an MF framework. An efficient and sounded optimization algorithm is proposed to solve the resulting non-convex problem in an alternating fashion. The performance of the proposed method is evaluated through the DrugBank dataset, and comparisons are provided against state-of-the-art techniques. The results demonstrate the superior performance of GRPMF when compared to its counterparts.

Yunshi Huang, Emilie Chouzenoux, Victor Elvira et al.

Bayesian neural networks (BNNs) have received an increased interest in the last years. In BNNs, a complete posterior distribution of the unknown weight and bias parameters of the network is produced during the training stage. This probabilistic estimation offers several advantages with respect to point-wise estimates, in particular, the ability to provide uncertainty quantification when predicting new data. This feature inherent to the Bayesian paradigm, is useful in countless machine learning applications. It is particularly appealing in areas where decision-making has a crucial impact, such as medical healthcare or autonomous driving. The main challenge of BNNs is the computational cost of the training procedure since Bayesian techniques often face a severe curse of dimensionality. Adaptive importance sampling (AIS) is one of the most prominent Monte Carlo methodologies benefiting from sounded convergence guarantees and ease for adaptation. This work aims to show that AIS constitutes a successful approach for designing BNNs. More precisely, we propose a novel algorithm PMCnet that includes an efficient adaptation mechanism, exploiting geometric information on the complex (often multimodal) posterior distribution. Numerical results illustrate the excellent performance and the improved exploration capabilities of the proposed method for both shallow and deep neural networks.

Emilie Chouzenoux, Victor Elvira

Time-series datasets are central in machine learning with applications in numerous fields of science and engineering, such as biomedicine, Earth observation, and network analysis. Extensive research exists on state-space models (SSMs), which are powerful mathematical tools that allow for probabilistic and interpretable learning on time series. Learning the model parameters in SSMs is arguably one of the most complicated tasks, and the inclusion of prior knowledge is known to both ease the interpretation but also to complicate the inferential tasks. Very recent works have attempted to incorporate a graphical perspective on some of those model parameters, but they present notable limitations that this work addresses. More generally, existing graphical modeling tools are designed to incorporate either static information, focusing on statistical dependencies among independent random variables (e.g., graphical Lasso approach), or dynamic information, emphasizing causal relationships among time series samples (e.g., graphical Granger approaches). However, there are no joint approaches combining static and dynamic graphical modeling within the context of SSMs. This work proposes a novel approach to fill this gap by introducing a joint graphical modeling framework that bridges the graphical Lasso model and a causal-based graphical approach for the linear-Gaussian SSM. We present DGLASSO (Dynamic Graphical Lasso), a new inference method within this framework that implements an efficient block alternating majorization-minimization algorithm. The algorithm's convergence is established by departing from modern tools from nonlinear analysis. Experimental validation on various synthetic data showcases the effectiveness of the proposed model and inference algorithm.

Alessandro Benfenati, Emilie Chouzenoux, Giorgia Franchini et al.

Several decades ago, Support Vector Machines (SVMs) were introduced for performing binary classification tasks, under a supervised framework. Nowadays, they often outperform other supervised methods and remain one of the most popular approaches in the machine learning arena. In this work, we investigate the training of SVMs through a smooth sparse-promoting-regularized squared hinge loss minimization. This choice paves the way to the application of quick training methods built on majorization-minimization approaches, benefiting from the Lipschitz differentiabililty of the loss function. Moreover, the proposed approach allows us to handle sparsity-preserving regularizers promoting the selection of the most significant features, so enhancing the performance. Numerical tests and comparisons conducted on three different datasets demonstrate the good performance of the proposed methodology in terms of qualitative metrics (accuracy, precision, recall, and F 1 score) as well as computational cost.

Emilie Chouzenoux, Marie-Caroline Corbineau, Jean-Christophe Pesquet et al.

The joint problem of reconstruction / feature extraction is a challenging task in image processing. It consists in performing, in a joint manner, the restoration of an image and the extraction of its features. In this work, we firstly propose a novel nonsmooth and non-convex variational formulation of the problem. For this purpose, we introduce a versatile generalised Gaussian prior whose parameters, including its exponent, are space-variant. Secondly, we design an alternating proximal-based optimisation algorithm that efficiently exploits the structure of the proposed non-convex objective function. We also analyse the convergence of this algorithm. As shown in numerical experiments conducted on joint deblurring/segmentation tasks, the proposed method provides high-quality results.

Mathieu Vu, Emilie Chouzenoux, Ismail Ben Ayed et al.

Ensemble learning leverages multiple models (i.e., weak learners) on a common machine learning task to enhance prediction performance. Basic ensembling approaches average the weak learners outputs, while more sophisticated ones stack a machine learning model in between the weak learners outputs and the final prediction. This work fuses both aforementioned frameworks. We introduce an aggregated f-average (AFA) shallow neural network which models and combines different types of averages to perform an optimal aggregation of the weak learners predictions. We emphasise its interpretable architecture and simple training strategy, and illustrate its good performance on the problem of few-shot class incremental learning.

Paul Zheng, Emilie Chouzenoux, Laurent Duval

Denoising, detrending, deconvolution: usual restoration tasks, traditionally decoupled. Coupled formulations entail complex ill-posed inverse problems. We propose PENDANTSS for joint trend removal and blind deconvolution of sparse peak-like signals. It blends a parsimonious prior with the hypothesis that smooth trend and noise can somewhat be separated by low-pass filtering. We combine the generalized quasi-norm ratio SOOT/SPOQ sparse penalties $\ell_p/\ell_q$ with the BEADS ternary assisted source separation algorithm. This results in a both convergent and efficient tool, with a novel Trust-Region block alternating variable metric forward-backward approach. It outperforms comparable methods, when applied to typically peaked analytical chemistry signals. Reproducible code is provided.

Shalini Sharma, Angshul Majumdar, Emilie Chouzenoux et al.

Our work presents two fundamental contributions. On the application side, we tackle the challenging problem of predicting day-ahead crypto-currency prices. On the methodological side, a new dynamical modeling approach is proposed. Our approach keeps the probabilistic formulation of the state-space model, which provides uncertainty quantification on the estimates, and the function approximation ability of deep neural networks. We call the proposed approach the deep state-space model. The experiments are carried out on established cryptocurrencies (obtained from Yahoo Finance). The goal of the work has been to predict the price for the next day. Benchmarking has been done with both state-of-the-art and classical dynamical modeling techniques. Results show that the proposed approach yields the best overall results in terms of accuracy.

Emilie Chouzenoux, Cecile Della Valle, Jean-Christophe Pesquet

We consider a neural network architecture designed to solve inverse problems where the degradation operator is linear and known. This architecture is constructed by unrolling a forward-backward algorithm derived from the minimization of an objective function that combines a data-fidelity term, a Tikhonov-type regularization term, and a potentially nonsmooth convex penalty. The robustness of this inversion method to input perturbations is analyzed theoretically. Ensuring robustness complies with the principles of inverse problem theory, as it ensures both the continuity of the inversion method and the resilience to small noise - a critical property given the known vulnerability of deep neural networks to adversarial perturbations. A key novelty of our work lies in examining the robustness of the proposed network to perturbations in its bias, which represents the observed data in the inverse problem. Additionally, we provide numerical illustrations of the analytical Lipschitz bounds derived in our analysis.

Mouna Gharbi, Silvia Villa, Emilie Chouzenoux et al.

Data restoration from degraded observations, of sparsity hypotheses, is an active field of study. Traditional iterative optimization methods are now complemented by deep learning techniques. The development of unfolded methods benefits from both families. We carry out a comparative study of three architectures on parameterized chromatographic signal databases, highlighting the performance of these approaches, especially when employing metrics adapted to physico-chemical peak signal characterization.

Yunshi Huang, Emilie Chouzenoux, Jean-Christophe Pesquet

In this paper, we introduce a variational Bayesian algorithm (VBA) for image blind deconvolution. Our generic framework incorporates smoothness priors on the unknown blur/image and possible affine constraints (e.g., sum to one) on the blur kernel. One of our main contributions is the integration of VBA within a neural network paradigm, following an unrolling methodology. The proposed architecture is trained in a supervised fashion, which allows us to optimally set two key hyperparameters of the VBA model and lead to further improvements in terms of resulting visual quality. Various experiments involving grayscale/color images and diverse kernel shapes, are performed. The numerical examples illustrate the high performance of our approach when compared to state-of-the-art techniques based on optimization, Bayesian estimation, or deep learning.

Wen Tang, Emilie Chouzenoux, Jean-Christophe Pesquet et al.

Based on its great successes in inference and denosing tasks, Dictionary Learning (DL) and its related sparse optimization formulations have garnered a lot of research interest. While most solutions have focused on single layer dictionaries, the recently improved Deep DL methods have also fallen short on a number of issues. We hence propose a novel Deep DL approach where each DL layer can be formulated and solved as a combination of one linear layer and a Recurrent Neural Network, where the RNN is flexibly regraded as a layer-associated learned metric. Our proposed work unveils new insights between the Neural Networks and Deep DL, and provides a novel, efficient and competitive approach to jointly learn the deep transforms and metrics. Extensive experiments are carried out to demonstrate that the proposed method can not only outperform existing Deep DL, but also state-of-the-art generic Convolutional Neural Networks.

Pooja Gupta, Angshul Majumdar, Emilie Chouzenoux et al.

This work proposes a supervised multi-channel time-series learning framework for financial stock trading. Although many deep learning models have recently been proposed in this domain, most of them treat the stock trading time-series data as 2-D image data, whereas its true nature is 1-D time-series data. Since the stock trading systems are multi-channel data, many existing techniques treating them as 1-D time-series data are not suggestive of any technique to effectively fusion the information carried by the multiple channels. To contribute towards both of these shortcomings, we propose an end-to-end supervised learning framework inspired by the previously established (unsupervised) convolution transform learning framework. Our approach consists of processing the data channels through separate 1-D convolution layers, then fusing the outputs with a series of fully-connected layers, and finally applying a softmax classification layer. The peculiarity of our framework - SuperDeConFuse (SDCF), is that we remove the nonlinear activation located between the multi-channel convolution layers and the fully-connected layers, as well as the one located between the latter and the output layer. We compensate for this removal by introducing a suitable regularization on the aforementioned layer outputs and filters during the training phase. Specifically, we apply a logarithm determinant regularization on the layer filters to break symmetry and force diversity in the learnt transforms, whereas we enforce the non-negativity constraint on the layer outputs to mitigate the issue of dead neurons. This results in the effective learning of a richer set of features and filters with respect to a standard convolutional neural network. Numerical experiments confirm that the proposed model yields considerably better results than state-of-the-art deep learning techniques for real-world problem of stock trading.

Pooja Gupta, Jyoti Maggu, Angshul Majumdar et al.

This work proposes an unsupervised fusion framework based on deep convolutional transform learning. The great learning ability of convolutional filters for data analysis is well acknowledged. The success of convolutive features owes to convolutional neural network (CNN). However, CNN cannot perform learning tasks in an unsupervised fashion. In a recent work, we show that such shortcoming can be addressed by adopting a convolutional transform learning (CTL) approach, where convolutional filters are learnt in an unsupervised fashion. The present paper aims at (i) proposing a deep version of CTL; (ii) proposing an unsupervised fusion formulation taking advantage of the proposed deep CTL representation; (iii) developing a mathematically sounded optimization strategy for performing the learning task. We apply the proposed technique, named DeConFuse, on the problem of stock forecasting and trading. Comparison with state-of-the-art methods (based on CNN and long short-term memory network) shows the superiority of our method for performing a reliable feature extraction.

Pooja Gupta, Jyoti Maggu, Angshul Majumdar et al.

This work addresses the problem of analyzing multi-channel time series data %. In this paper, we by proposing an unsupervised fusion framework based on %the recently proposed convolutional transform learning. Each channel is processed by a separate 1D convolutional transform; the output of all the channels are fused by a fully connected layer of transform learning. The training procedure takes advantage of the proximal interpretation of activation functions. We apply the developed framework to multi-channel financial data for stock forecasting and trading. We compare our proposed formulation with benchmark deep time series analysis networks. The results show that our method yields considerably better results than those compared against.

Jyoti Maggu, Angshul Majumdar, Emilie Chouzenoux et al.

This work introduces a new unsupervised representation learning technique called Deep Convolutional Transform Learning (DCTL). By stacking convolutional transforms, our approach is able to learn a set of independent kernels at different layers. The features extracted in an unsupervised manner can then be used to perform machine learning tasks, such as classification and clustering. The learning technique relies on a well-sounded alternating proximal minimization scheme with established convergence guarantees. Our experimental results show that the proposed DCTL technique outperforms its shallow version CTL, on several benchmark datasets.

Aanchal Mongia, Stuti Jain, Emilie Chouzenoux et al.

This work formulates antiviral repositioning as a matrix completion problem where the antiviral drugs are along the rows and the viruses along the columns. The input matrix is partially filled, with ones in positions where the antiviral has been known to be effective against a virus. The curated metadata for antivirals (chemical structure and pathways) and viruses (genomic structure and symptoms) is encoded into our matrix completion framework as graph Laplacian regularization. We then frame the resulting multiple graph regularized matrix completion problem as deep matrix factorization. This is solved by using a novel optimization method called HyPALM (Hybrid Proximal Alternating Linearized Minimization). Results on our curated RNA drug virus association (DVA) dataset shows that the proposed approach excels over state-of-the-art graph regularized matrix completion techniques. When applied to "in silico" prediction of antivirals for COVID-19, our approach returns antivirals that are either used for treating patients or are under for trials for the same.

Wen Tang, Emilie Chouzenoux, Jean-Christophe Pesquet et al.

On account of its many successes in inference tasks and denoising applications, Dictionary Learning (DL) and its related sparse optimization problems have garnered a lot of research interest. While most solutions have focused on single layer dictionaries, the improved recently proposed Deep DL (DDL) methods have also fallen short on a number of issues. We propose herein, a novel DDL approach where each DL layer can be formulated as a combination of one linear layer and a Recurrent Neural Network (RNN). The RNN is shown to flexibly account for the layer-associated and learned metric. Our proposed work unveils new insights into Neural Networks and DDL and provides a new, efficient and competitive approach to jointly learn a deep transform and a metric for inference applications. Extensive experiments are carried out to demonstrate that the proposed method can not only outperform existing DDL but also state-of-the-art generic CNNs.

Aanchal Mongia, Neha Jhamb, Emilie Chouzenoux et al.

Latent factor models have been used widely in collaborative filtering based recommender systems. In recent years, deep learning has been successful in solving a wide variety of machine learning problems. Motivated by the success of deep learning, we propose a deeper version of latent factor model. Experiments on benchmark datasets shows that our proposed technique significantly outperforms all state-of-the-art collaborative filtering techniques.

Jyoti Maggu, Angshul Majumdar, Emilie Chouzenoux

Subspace clustering assumes that the data is sepa-rable into separate subspaces. Such a simple as-sumption, does not always hold. We assume that, even if the raw data is not separable into subspac-es, one can learn a representation (transform coef-ficients) such that the learnt representation is sep-arable into subspaces. To achieve the intended goal, we embed subspace clustering techniques (locally linear manifold clustering, sparse sub-space clustering and low rank representation) into transform learning. The entire formulation is jointly learnt; giving rise to a new class of meth-ods called transformed subspace clustering (TSC). In order to account for non-linearity, ker-nelized extensions of TSC are also proposed. To test the performance of the proposed techniques, benchmarking is performed on image clustering and document clustering datasets. Comparison with state-of-the-art clustering techniques shows that our formulation improves upon them.

Emilie Chouzenoux, Henri Gérard, Jean-Christophe Pesquet

A wide array of machine learning problems are formulated as the minimization of the expectation of a convex loss function on some parameter space. Since the probability distribution of the data of interest is usually unknown, it is is often estimated from training sets, which may lead to poor out-of-sample performance. In this work, we bring new insights in this problem by using the framework which has been developed in quantitative finance for risk measures. We show that the original min-max problem can be recast as a convex minimization problem under suitable assumptions. We discuss several important examples of robust formulations, in particular by defining ambiguity sets based on $\varphi$-divergences and the Wasserstein metric.We also propose an efficient algorithm for solving the corresponding convex optimization problems involving complex convex constraints. Through simulation examples, we demonstrate that this algorithm scales well on real data sets.

Carla Bertocchi, Emilie Chouzenoux, Marie-Caroline Corbineau et al.

Variational methods are widely applied to ill-posed inverse problems for they have the ability to embed prior knowledge about the solution. However, the level of performance of these methods significantly depends on a set of parameters, which can be estimated through computationally expensive and time-consuming methods. In contrast, deep learning offers very generic and efficient architectures, at the expense of explainability, since it is often used as a black-box, without any fine control over its output. Deep unfolding provides a convenient approach to combine variational-based and deep learning approaches. Starting from a variational formulation for image restoration, we develop iRestNet, a neural network architecture obtained by unfolding a proximal interior point algorithm. Hard constraints, encoding desirable properties for the restored image, are incorporated into the network thanks to a logarithmic barrier, while the barrier parameter, the stepsize, and the penalization weight are learned by the network. We derive explicit expressions for the gradient of the proximity operator for various choices of constraints, which allows training iRestNet with gradient descent and backpropagation. In addition, we provide theoretical results regarding the stability of the network for a common inverse problem example. Numerical experiments on image deblurring problems show that the proposed approach compares favorably with both state-of-the-art variational and machine learning methods in terms of image quality.

Viacheslav Dudar, Giovanni Chierchia, Emilie Chouzenoux et al.

In this paper, we develop a novel second-order method for training feed-forward neural nets. At each iteration, we construct a quadratic approximation to the cost function in a low-dimensional subspace. We minimize this approximation inside a trust region through a two-stage procedure: first inside the embedded positive curvature subspace, followed by a gradient descent step. This approach leads to a fast objective function decay, prevents convergence to saddle points, and alleviates the need for manually tuning parameters. We show the good performance of the proposed algorithm on benchmark datasets.

Luis M. Briceno-Arias, Giovanni Chierchia, Emilie Chouzenoux et al.

In this paper, we propose a new optimization algorithm for sparse logistic regression based on a stochastic version of the Douglas-Rachford splitting method. Our algorithm sweeps the training set by randomly selecting a mini-batch of data at each iteration, and it allows us to update the variables in a block coordinate manner. Our approach leverages the proximity operator of the logistic loss, which is expressed with the generalized Lambert W function. Experiments carried out on standard datasets demonstrate the efficiency of our approach w.r.t. stochastic gradient-like methods.

Qi Wei, Emilie Chouzenoux, Jean-Yves Tourneret et al.

This paper presents a fast approach for penalized least squares (LS) regression problems using a 2D Gaussian Markov random field (GMRF) prior. More precisely, the computation of the proximity operator of the LS criterion regularized by different GMRF potentials is formulated as solving a Sylvester-like matrix equation. By exploiting the structural properties of GMRFs, this matrix equation is solved columnwise in an analytical way. The proposed algorithm can be embedded into a wide range of proximal algorithms to solve LS regression problems including a convex penalty. Experiments carried out in the case of a constrained LS regression problem arising in a multichannel image processing application, provide evidence that an alternating direction method of multipliers performs quite efficiently in this context.

Yosra Marnissi, Yuling Zheng, Emilie Chouzenoux et al.

In this paper, a methodology is investigated for signal recovery in the presence of non-Gaussian noise. In contrast with regularized minimization approaches often adopted in the literature, in our algorithm the regularization parameter is reliably estimated from the observations. As the posterior density of the unknown parameters is analytically intractable, the estimation problem is derived in a variational Bayesian framework where the goal is to provide a good approximation to the posterior distribution in order to compute posterior mean estimates. Moreover, a majorization technique is employed to circumvent the difficulties raised by the intricate forms of the non-Gaussian likelihood and of the prior density. We demonstrate the potential of the proposed approach through comparisons with state-of-the-art techniques that are specifically tailored to signal recovery in the presence of mixed Poisson-Gaussian noise. Results show that the proposed approach is efficient and achieves performance comparable with other methods where the regularization parameter is manually tuned from the ground truth.