Vladimir Iglovikov

Vladimir I. Iglovikov, Selim Seferbekov, Alexander V. Buslaev et al.

The most common approaches to instance segmentation are complex and use two-stage networks with object proposals, conditional random-fields, template matching or recurrent neural networks. In this work we present TernausNetV2 - a simple fully convolutional network that allows extracting objects from a high-resolution satellite imagery on an instance level. The network has popular encoder-decoder type of architecture with skip connections but has a few essential modifications that allows using for semantic as well as for instance segmentation tasks. This approach is universal and allows to extend any network that has been successfully applied for semantic segmentation to perform instance segmentation task. In addition, we generalize network encoder that was pre-trained for RGB images to use additional input channels. It makes possible to use transfer learning from visual to a wider spectral range. For DeepGlobe-CVPR 2018 building detection sub-challenge, based on public leaderboard score, our approach shows superior performance in comparison to other methods. The source code corresponding pre-trained weights are publicly available at https://github.com/ternaus/TernausNetV2

Alexey Shvets, Vladimir Iglovikov, Alexander Rakhlin et al.

Accurate detection and localization for angiodysplasia lesions is an important problem in early stage diagnostics of gastrointestinal bleeding and anemia. Gold-standard for angiodysplasia detection and localization is performed using wireless capsule endoscopy. This pill-like device is able to produce thousand of high enough resolution images during one passage through gastrointestinal tract. In this paper we present our winning solution for MICCAI 2017 Endoscopic Vision SubChallenge: Angiodysplasia Detection and Localization its further improvements over the state-of-the-art results using several novel deep neural network architectures. It address the binary segmentation problem, where every pixel in an image is labeled as an angiodysplasia lesions or background. Then, we analyze connected component of each predicted mask. Based on the analysis we developed a classifier that predict angiodysplasia lesions (binary variable) and a detector for their localization (center of a component). In this setting, our approach outperforms other methods in every task subcategory for angiodysplasia detection and localization thereby providing state-of-the-art results for these problems. The source code for our solution is made publicly available at https://github.com/ternaus/angiodysplasia-segmentatio

Alexey Shvets, Alexander Rakhlin, Alexandr A. Kalinin et al.

Semantic segmentation of robotic instruments is an important problem for the robot-assisted surgery. One of the main challenges is to correctly detect an instrument's position for the tracking and pose estimation in the vicinity of surgical scenes. Accurate pixel-wise instrument segmentation is needed to address this challenge. In this paper we describe our winning solution for MICCAI 2017 Endoscopic Vision SubChallenge: Robotic Instrument Segmentation. Our approach demonstrates an improvement over the state-of-the-art results using several novel deep neural network architectures. It addressed the binary segmentation problem, where every pixel in an image is labeled as an instrument or background from the surgery video feed. In addition, we solve a multi-class segmentation problem, where we distinguish different instruments or different parts of an instrument from the background. In this setting, our approach outperforms other methods in every task subcategory for automatic instrument segmentation thereby providing state-of-the-art solution for this problem. The source code for our solution is made publicly available at https://github.com/ternaus/robot-surgery-segmentation

Vladimir Iglovikov, Alexey Shvets

Pixel-wise image segmentation is demanding task in computer vision. Classical U-Net architectures composed of encoders and decoders are very popular for segmentation of medical images, satellite images etc. Typically, neural network initialized with weights from a network pre-trained on a large data set like ImageNet shows better performance than those trained from scratch on a small dataset. In some practical applications, particularly in medicine and traffic safety, the accuracy of the models is of utmost importance. In this paper, we demonstrate how the U-Net type architecture can be improved by the use of the pre-trained encoder. Our code and corresponding pre-trained weights are publicly available at https://github.com/ternaus/TernausNet. We compare three weight initialization schemes: LeCun uniform, the encoder with weights from VGG11 and full network trained on the Carvana dataset. This network architecture was a part of the winning solution (1st out of 735) in the Kaggle: Carvana Image Masking Challenge.

John Houston, Guido Zuidhof, Luca Bergamini et al.

Motivated by the impact of large-scale datasets on ML systems we present the largest self-driving dataset for motion prediction to date, containing over 1,000 hours of data. This was collected by a fleet of 20 autonomous vehicles along a fixed route in Palo Alto, California, over a four-month period. It consists of 170,000 scenes, where each scene is 25 seconds long and captures the perception output of the self-driving system, which encodes the precise positions and motions of nearby vehicles, cyclists, and pedestrians over time. On top of this, the dataset contains a high-definition semantic map with 15,242 labelled elements and a high-definition aerial view over the area. We show that using a dataset of this size dramatically improves performance for key self-driving problems. Combined with the provided software kit, this collection forms the largest and most detailed dataset to date for the development of self-driving machine learning tasks, such as motion forecasting, motion planning and simulation. The full dataset is available at http://level5.lyft.com/.

Max Allan, Satoshi Kondo, Sebastian Bodenstedt et al.

In 2015 we began a sub-challenge at the EndoVis workshop at MICCAI in Munich using endoscope images of ex-vivo tissue with automatically generated annotations from robot forward kinematics and instrument CAD models. However, the limited background variation and simple motion rendered the dataset uninformative in learning about which techniques would be suitable for segmentation in real surgery. In 2017, at the same workshop in Quebec we introduced the robotic instrument segmentation dataset with 10 teams participating in the challenge to perform binary, articulating parts and type segmentation of da Vinci instruments. This challenge included realistic instrument motion and more complex porcine tissue as background and was widely addressed with modifications on U-Nets and other popular CNN architectures. In 2018 we added to the complexity by introducing a set of anatomical objects and medical devices to the segmented classes. To avoid over-complicating the challenge, we continued with porcine data which is dramatically simpler than human tissue due to the lack of fatty tissue occluding many organs.

Alexander Rakhlin, Aleksei Tiulpin, Alexey A. Shvets et al.

Breast cancer is one of the main causes of death worldwide. Histopathological cellularity assessment of residual tumors in post-surgical tissues is used to analyze a tumor's response to a therapy. Correct cellularity assessment increases the chances of getting an appropriate treatment and facilitates the patient's survival. In current clinical practice, tumor cellularity is manually estimated by pathologists; this process is tedious and prone to errors or low agreement rates between assessors. In this work, we evaluated three strong novel Deep Learning-based approaches for automatic assessment of tumor cellularity from post-treated breast surgical specimens stained with hematoxylin and eosin. We validated the proposed methods on the BreastPathQ SPIE challenge dataset that consisted of 2395 image patches selected from whole slide images acquired from 64 patients. Compared to expert pathologist scoring, our best performing method yielded the Cohen's kappa coefficient of 0.70 (vs. 0.42 previously known in literature) and the intra-class correlation coefficient of 0.89 (vs. 0.83). Our results suggest that Deep Learning-based methods have a significant potential to alleviate the burden on pathologists, enhance the diagnostic workflow, and, thereby, facilitate better clinical outcomes in breast cancer treatment.

Max Allan, Alex Shvets, Thomas Kurmann et al.

In mainstream computer vision and machine learning, public datasets such as ImageNet, COCO and KITTI have helped drive enormous improvements by enabling researchers to understand the strengths and limitations of different algorithms via performance comparison. However, this type of approach has had limited translation to problems in robotic assisted surgery as this field has never established the same level of common datasets and benchmarking methods. In 2015 a sub-challenge was introduced at the EndoVis workshop where a set of robotic images were provided with automatically generated annotations from robot forward kinematics. However, there were issues with this dataset due to the limited background variation, lack of complex motion and inaccuracies in the annotation. In this work we present the results of the 2017 challenge on robotic instrument segmentation which involved 10 teams participating in binary, parts and type based segmentation of articulated da Vinci robotic instruments.

Artur Kuzin, Artur Fattakhov, Ilya Kibardin et al.

Source camera identification is the process of determining which camera or model has been used to capture an image. In the recent years, there has been a rapid growth of research interest in the domain of forensics. In the current work, we describe our Deep Learning approach to the camera detection task of 10 cameras as a part of the Camera Model Identification Challenge hosted by Kaggle.com where our team finished 2nd out of 582 teams with the accuracy on the unseen data of 98%. We used aggressive data augmentations that allowed a model to stay robust against transformations. A number of experiments are carried out on datasets collected by organizers and scraped from the web.

Alexander V. Buslaev, Selim S. Seferbekov, Vladimir I. Iglovikov et al.

Analysis of high-resolution satellite images has been an important research topic for traffic management, city planning, and road monitoring. One of the problems here is automatic and precise road extraction. From an original image, it is difficult and computationally expensive to extract roads due to presences of other road-like features with straight edges. In this paper, we propose an approach for automatic road extraction based on a fully convolutional neural network of U-net family. This network consists of ResNet-34 pre-trained on ImageNet and decoder adapted from vanilla U-Net. Based on validation results, leaderboard and our own experience this network shows superior results for the DEEPGLOBE - CVPR 2018 road extraction sub-challenge. Moreover, this network uses moderate memory that allows using just one GTX 1080 or 1080ti video cards to perform whole training and makes pretty fast predictions.

Selim S. Seferbekov, Vladimir I. Iglovikov, Alexander V. Buslaev et al.

Semantic segmentation is in-demand in satellite imagery processing. Because of the complex environment, automatic categorization and segmentation of land cover is a challenging problem. Solving it can help to overcome many obstacles in urban planning, environmental engineering or natural landscape monitoring. In this paper, we propose an approach for automatic multi-class land segmentation based on a fully convolutional neural network of feature pyramid network (FPN) family. This network is consisted of pre-trained on ImageNet Resnet50 encoder and neatly developed decoder. Based on validation results, leaderboard score and our own experience this network shows reliable results for the DEEPGLOBE - CVPR 2018 land cover classification sub-challenge. Moreover, this network moderately uses memory that allows using GTX 1080 or 1080 TI video cards to perform whole training and makes pretty fast predictions.

Vladimir Iglovikov, Sergey Mushinskiy, Vladimir Osin

This paper describes our approach to the DSTL Satellite Imagery Feature Detection challenge run by Kaggle. The primary goal of this challenge is accurate semantic segmentation of different classes in satellite imagery. Our approach is based on an adaptation of fully convolutional neural network for multispectral data processing. In addition, we defined several modifications to the training objective and overall training pipeline, e.g. boundary effect estimation, also we discuss usage of data augmentation strategies and reflectance indices. Our solution scored third place out of 419 entries. Its accuracy is comparable to the first two places, but unlike those solutions, it doesn't rely on complex ensembling techniques and thus can be easily scaled for deployment in production as a part of automatic feature labeling systems for satellite imagery analysis.