Siyuan Cao

AI
h-index2
4papers
101citations
Novelty53%
AI Score51

4 Papers

CVFeb 28, 2023Code
BEVPlace: Learning LiDAR-based Place Recognition using Bird's Eye View Images

Lun Luo, Shuhang Zheng, Yixuan Li et al.

Place recognition is a key module for long-term SLAM systems. Current LiDAR-based place recognition methods usually use representations of point clouds such as unordered points or range images. These methods achieve high recall rates of retrieval, but their performance may degrade in the case of view variation or scene changes. In this work, we explore the potential of a different representation in place recognition, i.e. bird's eye view (BEV) images. We observe that the structural contents of BEV images are less influenced by rotations and translations of point clouds. We validate that, without any delicate design, a simple VGGNet trained on BEV images achieves comparable performance with the state-of-the-art place recognition methods in scenes of slight viewpoint changes. For more robust place recognition, we design a rotation-invariant network called BEVPlace. We use group convolution to extract rotation-equivariant local features from the images and NetVLAD for global feature aggregation. In addition, we observe that the distance between BEV features is correlated with the geometry distance of point clouds. Based on the observation, we develop a method to estimate the position of the query cloud, extending the usage of place recognition. The experiments conducted on large-scale public datasets show that our method 1) achieves state-of-the-art performance in terms of recall rates, 2) is robust to view changes, 3) shows strong generalization ability, and 4) can estimate the positions of query point clouds. Source codes are publicly available at https://github.com/zjuluolun/BEVPlace.

DCMay 18
EPIC: Abstraction and Polymorphism of In-Network Collectives on Ethernet

Yitao Yuan, Jianglong Nie, Tianyu Bai et al.

In-Network Collective (INC) acceleration holds immense potential for optimizing AI training and inference; however, its cross-layer nature has historically hindered investment and adoption within the open Ethernet ecosystem. To bridge this gap, we propose EPIC (Ethernet Polymorphic In-network Collective), an INC protocol specification and reference system built on the principle of "Unified Abstraction, Polymorphic Realization." EPIC introduces an abstraction compatible with standard Ethernet that aligns functional boundaries with participant roles, while offering polymorphic realizations tailored to varying hardware capabilities. We address three fundamental challenges: first, we employ a modular design that enables an evolutionary path from simple to complex implementations, allowing vendors to iterate their hardware incrementally; second, we apply formal verification methodologies to prove the correctness of all proposed polymorphic modes; and third, we develop a unified resource management model versatile enough for diverse INC scenarios. Extensive validation -- spanning model checking, packet/flow simulations, VM emulation, Tofino Testbed, and FPGA/RTL verification -- confirms EPIC's correctness, performance gain, and feasibility.

QMDec 2, 2025
Molecular Embedding-Based Algorithm Selection in Protein-Ligand Docking

Jiabao Brad Wang, Siyuan Cao, Hongxuan Wu et al.

Selecting an effective docking algorithm is highly context-dependent, and no single method performs reliably across structural, chemical, or protocol regimes. We introduce MolAS, a lightweight algorithm selection system that predicts per-algorithm performance from pretrained protein-ligand embeddings using attentional pooling and a shallow residual decoder. With only hundreds to a few thousand labelled complexes, MolAS achieves up to 15% absolute improvement over the single-best solver (SBS) and closes 17-66% of the Virtual Best Solver (VBS)-SBS gap across five diverse docking benchmarks. Analyses of reliability, embedding geometry, and solver-selection patterns show that MolAS succeeds when the oracle landscape exhibits low entropy and separable solver behaviour, but collapses under protocol-induced hierarchy shifts. These findings indicate that the main barrier to robust docking AS is not representational capacity but instability in solver rankings across pose-generation regimes, positioning MolAS as both a practical in-domain selector and a diagnostic tool for assessing when AS is feasible.

AISep 30, 2025
MC-GNNAS-Dock: Multi-criteria GNN-based Algorithm Selection for Molecular Docking

Siyuan Cao, Hongxuan Wu, Jiabao Brad Wang et al.

Molecular docking is a core tool in drug discovery for predicting ligand-target interactions. Despite the availability of diverse search-based and machine learning approaches, no single docking algorithm consistently dominates, as performance varies by context. To overcome this challenge, algorithm selection frameworks such as GNNAS-Dock, built on graph neural networks, have been proposed. This study introduces an enhanced system, MC-GNNAS-Dock, with three key advances. First, a multi-criteria evaluation integrates binding-pose accuracy (RMSD) with validity checks from PoseBusters, offering a more rigorous assessment. Second, architectural refinements by inclusion of residual connections strengthen predictive robustness. Third, rank-aware loss functions are incorporated to sharpen rank learning. Extensive experiments are performed on a curated dataset containing approximately 3200 protein-ligand complexes from PDBBind. MC-GNNAS-Dock demonstrates consistently superior performance, achieving up to 5.4% (3.4%) gains under composite criteria of RMSD below 1Å (2Å) with PoseBuster-validity compared to the single best solver (SBS) Uni-Mol Docking V2.