Qiujie Xie

Minjun Zhu, Zhen Lin, Yixuan Weng et al.

High-quality scientific illustrations are crucial for effectively communicating complex scientific and technical concepts, yet their manual creation remains a well-recognized bottleneck in both academia and industry. We present FigureBench, the first large-scale benchmark for generating scientific illustrations from long-form scientific texts. It contains 3,300 high-quality scientific text-figure pairs, covering diverse text-to-illustration tasks from scientific papers, surveys, blogs, and textbooks. Moreover, we propose AutoFigure, the first agentic framework that automatically generates high-quality scientific illustrations based on long-form scientific text. Specifically, before rendering the final result, AutoFigure engages in extensive thinking, recombination, and validation to produce a layout that is both structurally sound and aesthetically refined, outputting a scientific illustration that achieves both structural completeness and aesthetic appeal. Leveraging the high-quality data from FigureBench, we conduct extensive experiments to test the performance of AutoFigure against various baseline methods. The results demonstrate that AutoFigure consistently surpasses all baseline methods, producing publication-ready scientific illustrations. The code, dataset and huggingface space are released in https://github.com/ResearAI/AutoFigure.

Qiujie Xie, Qingqiu Li, Zhuohao Yu et al. · pku

As LLM-as-a-Judge emerges as a new paradigm for assessing large language models (LLMs), concerns have been raised regarding the alignment, bias, and stability of LLM evaluators. While substantial work has focused on alignment and bias, little research has concentrated on the stability of LLM evaluators. In this paper, we conduct extensive experiments involving 9 widely used LLM evaluators across 2 different evaluation settings to investigate the uncertainty in model-based LLM evaluations. We pinpoint that LLM evaluators exhibit varying uncertainty based on model families and sizes. With careful comparative analyses, we find that employing special prompting strategies, whether during inference or post-training, can alleviate evaluation uncertainty to some extent. By utilizing uncertainty to enhance LLM's reliability and detection capability in Out-Of-Distribution (OOD) data, we further fine-tune an uncertainty-aware LLM evaluator named ConfiLM using a human-annotated fine-tuning set and assess ConfiLM's OOD evaluation ability on a manually designed test set sourced from the 2024 Olympics. Experimental results demonstrate that incorporating uncertainty as additional information during the fine-tuning phase can largely improve the model's evaluation performance in OOD scenarios. The code and data are released at: https://github.com/hasakiXie123/LLM-Evaluator-Uncertainty.

Yuliang Ji, Fuchen Shen, Jian Wu et al.

To comprehensively evaluate the mathematical reasoning capabilities of Large Language Models (LLMs), researchers have introduced abundant mathematical reasoning datasets. However, most existing datasets primarily focus on linear reasoning, neglecting other parts such as proof by contradiction and proof by cases, which are crucial for investigating LLMs' reasoning abilities. To address this limitation, we first introduce a novel first-order logic (FOL) dataset named PC-FOL, annotated by professional mathematicians, focusing on case-based reasoning problems. All instances in this dataset are equipped with a manually written natural language proof, clearly distinguishing it from conventional linear reasoning datasets. Our experimental results over leading LLMs demonstrate a substantial performance gap between linear reasoning and case-based reasoning problems. To further investigate this phenomenon, we provide a theoretical analysis grounded in graphical model, which provides an explanation for the observed disparity between the two types of reasoning problems. We hope this work can reveal the core challenges in the field of automated natural language mathematical proof generation, paving the way for future research.

Yixuan Weng, Minjun Zhu, Qiujie Xie et al.

While previous AI Scientist systems can generate novel findings, they often lack the focus to produce scientifically valuable contributions that address pressing human-defined challenges. We introduce DeepScientist, a system designed to overcome this by conducting goal-oriented, fully autonomous scientific discovery over month-long timelines. It formalizes discovery as a Bayesian Optimization problem, operationalized through a hierarchical evaluation process consisting of "hypothesize, verify, and analyze". Leveraging a cumulative Findings Memory, this loop intelligently balances the exploration of novel hypotheses with exploitation, selectively promoting the most promising findings to higher-fidelity levels of validation. Consuming over 20,000 GPU hours, the system generated about 5,000 unique scientific ideas and experimentally validated approximately 1100 of them, ultimately surpassing human-designed state-of-the-art (SOTA) methods on three frontier AI tasks by 183.7\%, 1.9\%, and 7.9\%. This work provides the first large-scale evidence of an AI achieving discoveries that progressively surpass human SOTA on scientific tasks, producing valuable findings that genuinely push the frontier of scientific discovery. To facilitate further research into this process, we will open-source all experimental logs and system code at https://github.com/ResearAI/DeepScientist/.

Yixuan Weng, Minjun Zhu, Qiujie Xie et al.

Automated peer review is often framed as generating fluent critique, yet reviewers and area chairs need judgments they can \emph{audit}: where a concern applies, what evidence supports it, and what concrete follow-up is required. DeepReviewer~2.0 is a process-controlled agentic review system built around an output contract: it produces a \textbf{traceable review package} with anchored annotations, localized evidence, and executable follow-up actions, and it exports only after meeting minimum traceability and coverage budgets. Concretely, it first builds a manuscript-only claim--evidence--risk ledger and verification agenda, then performs agenda-driven retrieval and writes anchored critiques under an export gate. On 134 ICLR~2025 submissions under three fixed protocols, an \emph{un-finetuned 196B} model running DeepReviewer~2.0 outperforms Gemini-3.1-Pro-preview, improving strict major-issue coverage (37.26\% vs.\ 23.57\%) and winning 71.63\% of micro-averaged blind comparisons against a human review committee, while ranking first among automatic systems in our pool. We position DeepReviewer~2.0 as an assistive tool rather than a decision proxy, and note remaining gaps such as ethics-sensitive checks.

Minjun Zhu, Qiujie Xie, Yixuan Weng et al.

The emergence of Artificial Intelligence (AI) Scientist represents a paradigm shift in scientific discovery, with large language models (LLMs) taking the lead as the primary executor in the entire scientific workflow from idea generation to experiment implementation. Recent AI Scientist studies demonstrate sufficient capabilities for independent scientific discovery, with the generated research reports gaining acceptance at the ICLR 2025 workshop and ACL 2025, arguing that a human-level AI Scientist, capable of uncovering phenomena previously unknown to humans, may be imminent. Despite this substantial progress, AI Scientist has yet to produce a groundbreaking achievement in the domain of computer science on par with automated scientific tools. Based on extensive quantitative evidence from existing benchmarks in complex engineering tasks and a systematic evaluation assess 28 research papers generated by five advanced AI Scientist systems, we argue that \textbf{the fundamental bottleneck for AI Scientists lies in their capability to execute the requisite verification procedures.} Current AI Scientist systems lack the execution capabilities needed to execute rigorous experiments and produce high-quality scientific papers. To better illustrate the root cause of this \textbf{implementation gap}, we provide an in-depth discussion on the fundamental limitations of AI Scientist. This position paper aims to call for the participants in the community to bridge the implementation gap.

Qiujie Xie, Yixuan Weng, Minjun Zhu et al.

The emergence of large language models (LLMs) is propelling automated scientific discovery to the next level, with LLM-based Artificial Intelligence (AI) Scientist systems now taking the lead in scientific research. Several influential works have already appeared in the field of AI Scientist systems, with AI-generated research papers having been accepted at the ICLR 2025 workshop, suggesting that a human-level AI Scientist capable of uncovering phenomena previously unknown to humans, may soon become a reality. In this survey, we focus on the central question: How far are AI scientists from changing the world and reshaping the scientific research paradigm? To answer this question, we provide a prospect-driven review that comprehensively analyzes the current achievements of AI Scientist systems, identifying key bottlenecks and the critical components required for the emergence of a scientific agent capable of producing ground-breaking discoveries that solve grand challenges. We hope this survey will contribute to a clearer understanding of limitations of current AI Scientist systems, showing where we are, what is missing, and what the ultimate goals for scientific AI should be.

Zhengliang Shi, Yiqun Chen, Haitao Li et al.

Large language models (LLMs) have rapidly evolved from text generators into powerful problem solvers. Yet, many open tasks demand critical thinking, multi-source, and verifiable outputs, which are beyond single-shot prompting or standard retrieval-augmented generation. Recently, numerous studies have explored Deep Research (DR), which aims to combine the reasoning capabilities of LLMs with external tools, such as search engines, thereby empowering LLMs to act as research agents capable of completing complex, open-ended tasks. This survey presents a comprehensive and systematic overview of deep research systems, including a clear roadmap, foundational components, practical implementation techniques, important challenges, and future directions. Specifically, our main contributions are as follows: (i) we formalize a three-stage roadmap and distinguish deep research from related paradigms; (ii) we introduce four key components: query planning, information acquisition, memory management, and answer generation, each paired with fine-grained sub-taxonomies; (iii) we summarize optimization techniques, including prompting, supervised fine-tuning, and agentic reinforcement learning; and (iv) we consolidate evaluation criteria and open challenges, aiming to guide and facilitate future development. As the field of deep research continues to evolve rapidly, we are committed to continuously updating this survey to reflect the latest progress in this area.

Bo Xu, Qiujie Xie, Jiahui Zhou et al.

Multimodal fake news detection has become one of the most crucial issues on social media platforms. Although existing methods have achieved advanced performance, two main challenges persist: (1) Under-performed multimodal news information fusion due to model architecture solidification, and (2) weak generalization ability on partial-modality contained fake news. To meet these challenges, we propose a novel and flexible triple path enhanced neural architecture search model MUSE. MUSE includes two dynamic paths for detecting partial-modality contained fake news and a static path for exploiting potential multimodal correlations. Experimental results show that MUSE achieves stable performance improvement over the baselines.