William Han

William Han, Jielin Qiu, Jiacheng Zhu et al. · cmu

Brain Signals, such as Electroencephalography (EEG), and human languages have been widely explored independently for many downstream tasks, however, the connection between them has not been well explored. In this study, we explore the relationship and dependency between EEG and language. To study at the representation level, we introduced \textbf{MTAM}, a \textbf{M}ultimodal \textbf{T}ransformer \textbf{A}lignment \textbf{M}odel, to observe coordinated representations between the two modalities. We used various relationship alignment-seeking techniques, such as Canonical Correlation Analysis and Wasserstein Distance, as loss functions to transfigure features. On downstream applications, sentiment analysis and relation detection, we achieved new state-of-the-art results on two datasets, ZuCo and K-EmoCon. Our method achieved an F1-score improvement of 1.7% on K-EmoCon and 9.3% on Zuco datasets for sentiment analysis, and 7.4% on ZuCo for relation detection. In addition, we provide interpretations of the performance improvement: (1) feature distribution shows the effectiveness of the alignment module for discovering and encoding the relationship between EEG and language; (2) alignment weights show the influence of different language semantics as well as EEG frequency features; (3) brain topographical maps provide an intuitive demonstration of the connectivity in the brain regions. Our code is available at \url{https://github.com/Jason-Qiu/EEG_Language_Alignment}.

Jielin Qiu, Jiacheng Zhu, William Han et al. · cmu, microsoft-research

Multimodal summarization with multimodal output (MSMO) has emerged as a promising research direction. Nonetheless, numerous limitations exist within existing public MSMO datasets, including insufficient maintenance, data inaccessibility, limited size, and the absence of proper categorization, which pose significant challenges. To address these challenges and provide a comprehensive dataset for this new direction, we have meticulously curated the \textbf{MMSum} dataset. Our new dataset features (1) Human-validated summaries for both video and textual content, providing superior human instruction and labels for multimodal learning. (2) Comprehensively and meticulously arranged categorization, spanning 17 principal categories and 170 subcategories to encapsulate a diverse array of real-world scenarios. (3) Benchmark tests performed on the proposed dataset to assess various tasks and methods, including \textit{video summarization}, \textit{text summarization}, and \textit{multimodal summarization}. To champion accessibility and collaboration, we will release the \textbf{MMSum} dataset and the data collection tool as fully open-source resources, fostering transparency and accelerating future developments. Our project website can be found at~\url{https://mmsum-dataset.github.io/}

Jielin Qiu, William Han, Jiacheng Zhu et al. · cmu

Recent advancements in Large Language Models (LLMs) have drawn increasing attention since the learned embeddings pretrained on large-scale datasets have shown powerful ability in various downstream applications. However, whether the learned knowledge by LLMs can be transferred to clinical cardiology remains unknown. In this work, we aim to bridge this gap by transferring the knowledge of LLMs to clinical Electrocardiography (ECG). We propose an approach for cardiovascular disease diagnosis and automatic ECG diagnosis report generation. We also introduce an additional loss function by Optimal Transport (OT) to align the distribution between ECG and language embedding. The learned embeddings are evaluated on two downstream tasks: (1) automatic ECG diagnosis report generation, and (2) zero-shot cardiovascular disease detection. Our approach is able to generate high-quality cardiac diagnosis reports and also achieves competitive zero-shot classification performance even compared with supervised baselines, which proves the feasibility of transferring knowledge from LLMs to the cardiac domain.

William Han, Tony Chen, Chaojing Duan et al. · cmu

ECG-Language Models (ELMs) extend recent progress in Multimodal Large Language Models (MLLMs) to automated ECG interpretation. However, most ELMs follow Vision-Language Model (VLM) designs and depend on pretrained ECG encoders, adding architectural and training complexity. Inspired by encoder-free VLMs, we introduce ELF, an encoder-free ELM that replaces the ECG encoder with a single projection layer trained jointly with the LLM. Across five datasets, ELF matches or exceeds state-of-the-art ELMs that use far more complex encoders and training pipelines. We also test whether adding architectural biases to ELF improves performance and find that the single linear projection remains competitive. Finally, we show that ELF, and potentially other ELMs, often rely more on benchmark artifacts and language priors than ECG-derived information, highlighting limitations in current evaluation practices and ELM design. All data and code is available at https://github.com/willxxy/ECG-Bench.

Jielin Qiu, Jiacheng Zhu, Shiqi Liu et al. · cmu

Automated interpretation of electrocardiograms (ECG) has garnered significant attention with the advancements in machine learning methodologies. Despite the growing interest, most current studies focus solely on classification or regression tasks, which overlook a crucial aspect of clinical cardio-disease diagnosis: the diagnostic report generated by experienced human clinicians. In this paper, we introduce a novel approach to ECG interpretation, leveraging recent breakthroughs in Large Language Models (LLMs) and Vision-Transformer (ViT) models. Rather than treating ECG diagnosis as a classification or regression task, we propose an alternative method of automatically identifying the most similar clinical cases based on the input ECG data. Also, since interpreting ECG as images is more affordable and accessible, we process ECG as encoded images and adopt a vision-language learning paradigm to jointly learn vision-language alignment between encoded ECG images and ECG diagnosis reports. Encoding ECG into images can result in an efficient ECG retrieval system, which will be highly practical and useful in clinical applications. More importantly, our findings could serve as a crucial resource for providing diagnostic services in underdeveloped regions.

Xiaoyu Song, William Han, Tony Chen et al. · cmu

Interest in generative Electrocardiogram-Language Models (ELMs) is growing, as they can produce textual responses conditioned on ECG signals and textual queries. Unlike traditional classifiers that output label probabilities, ELMs are more versatile, supporting domain-specific tasks (e.g., waveform analysis, diagnosis, prognosis) as well as general tasks (e.g., open-ended questions, dialogue). Retrieval-Augmented Generation (RAG), widely used in Large Language Models (LLMs) to ground LLM outputs in retrieved knowledge, helps reduce hallucinations and improve natural language generation (NLG). However, despite its promise, no open-source implementation or systematic study of RAG pipeline design for ELMs currently exists. To address this gap, we present the first open-source RAG pipeline for ELMs, along with baselines and ablation studies for NLG. Experiments on three public datasets show that ELMs with RAG consistently improves performance over non-RAG baselines and highlights key ELM design considerations. Our code is available at: https://github.com/willxxy/ECG-Bench.

Yuyou Zhang, Miao Li, William Han et al. · cmu

Large Language Models (LLMs) are vulnerable to jailbreak attacks that exploit weaknesses in traditional safety alignment, which often relies on rigid refusal heuristics or representation engineering to block harmful outputs. While they are effective for direct adversarial attacks, they fall short of broader safety challenges requiring nuanced, context-aware decision-making. To address this, we propose Reasoning-enhanced Finetuning for interpretable LLM Safety (Rational), a novel framework that trains models to engage in explicit safe reasoning before response. Fine-tuned models leverage the extensive pretraining knowledge in self-generated reasoning to bootstrap their own safety through structured reasoning, internalizing context-sensitive decision-making. Our findings suggest that safety extends beyond refusal, requiring context awareness for more robust, interpretable, and adaptive responses. Reasoning is not only a core capability of LLMs but also a fundamental mechanism for LLM safety. Rational employs reasoning-enhanced fine-tuning, allowing it to reject harmful prompts while providing meaningful and context-aware responses in complex scenarios.

Zhepeng Cen, Yihang Yao, William Han et al. · cmu

Reinforcement learning (RL) has emerged as a powerful post-training technique to incentivize the reasoning ability of large language models (LLMs). However, LLMs can respond very inconsistently to RL finetuning: some show substantial performance gains, while others plateau or even degrade. To understand this divergence, we analyze the per-step influence of the RL objective and identify two key conditions for effective post-training: (1) RL-informative rollout accuracy, and (2) strong data co-influence, which quantifies how much the training data affects performance on other samples. Guided by these insights, we propose behavior injection, a task-agnostic data augmentation scheme applied prior to RL. Behavior injection enriches the supervised finetuning (SFT) data by seeding exploratory and exploitative behaviors, effectively making the model more RL-ready. We evaluate our method across two reasoning benchmarks with multiple base models. The results demonstrate that our theoretically motivated augmentation can significantly increase the performance gain from RL over the pre-RL model.

William Han, Chaojing Duan, Michael A. Rosenberg et al. · cmu

Large Language Models (LLMs) have demonstrated exceptional versatility across domains, including applications to electrocardiograms (ECGs). A growing body of work focuses on generating text from multi-channeled ECG signals and corresponding textual prompts. Existing approaches often involve a two-stage process: pretraining an ECG-specific encoder with a self-supervised learning (SSL) objective, followed by finetuning an LLM for natural language generation (NLG) using encoder-derived features. However, these methods face two key limitations: inefficiency due to multi-stage training and challenges in interpreting encoder-generated features. To overcome these issues, we propose ECG-Byte, an adapted byte pair encoding (BPE) tokenizer pipeline for autoregressive language modeling of ECGs. ECG-Byte compresses and encodes ECG signals into tokens, enabling direct end-to-end LLM training by combining ECG and text tokens. This approach enhances interpretability, as ECG tokens can be directly mapped back to the original signals. Leveraging ECG-Byte, we achieve competitive NLG performance while training 3 times faster and using just 48\% of the data required by traditional two-stage methods.

William Han, Chaojing Duan, Zhepeng Cen et al. · cmu

Recent advances have increasingly applied large language models (LLMs) to electrocardiogram (ECG) interpretation, giving rise to Electrocardiogram-Language Models (ELMs). Conditioned on an ECG and a textual query, an ELM autoregressively generates a free-form textual response. Unlike traditional classification-based systems, ELMs emulate expert cardiac electrophysiologists by issuing diagnoses, analyzing waveform morphology, identifying contributing factors, and proposing patient-specific action plans. To realize this potential, researchers are curating instruction-tuning datasets that pair ECGs with textual dialogues and are training ELMs on these resources. Yet before scaling ELMs further, there is a fundamental question yet to be explored: What is the most effective ECG input representation? In recent works, three candidate representations have emerged-raw time-series signals, rendered images, and discretized symbolic sequences. We present the first comprehensive benchmark of these modalities across 6 public datasets and 5 evaluation metrics. We find symbolic representations achieve the greatest number of statistically significant wins over both signal and image inputs. We further ablate the LLM backbone, ECG duration, and token budget, and we evaluate robustness to signal perturbations. We hope that our findings offer clear guidance for selecting input representations when developing the next generation of ELMs.

Yihang Yao, Zhepeng Cen, Miao Li et al. · cmu

Large Language Models (LLMs) have demonstrated strong reasoning capabilities across various tasks. However, even minor variations in query phrasing, despite preserving the underlying semantic meaning, can significantly affect their performance. To address this, we focus on enhancing LLMs' awareness of symmetry in query variations and propose syMmetry-ENhanceD (MEND) Data Augmentation, a data-centric approach that improves the model's ability to extract useful information from context. Unlike existing methods that emphasize reasoning chain augmentation, our approach improves model robustness at the knowledge extraction stage through query augmentations, enabling more data-efficient training and stronger generalization to Out-of-Distribution (OOD) settings. Extensive experiments on both logical and arithmetic reasoning tasks show that MEND enhances reasoning performance across diverse query variations, providing new insight into improving LLM robustness through structured dataset curation.

Kai Li, Junhao Wang, William Han et al. · cmu

Minimally invasive surgery (MIS) requires high-fidelity, real-time visual feedback of dynamic and low-texture surgical scenes. To address these requirements, we introduce FeatureEndo-4DGS (FE-4DGS), the first real time pipeline leveraging feature-distilled 4D Gaussian Splatting for simultaneous reconstruction and semantic segmentation of deformable surgical environments. Unlike prior feature-distilled methods restricted to static scenes, and existing 4D approaches that lack semantic integration, FE-4DGS seamlessly leverages pre-trained 2D semantic embeddings to produce a unified 4D representation-where semantics also deform with tissue motion. This unified approach enables the generation of real-time RGB and semantic outputs through a single, parallelized rasterization process. Despite the additional complexity from feature distillation, FE-4DGS sustains real-time rendering (61 FPS) with a compact footprint, achieves state-of-the-art rendering fidelity on EndoNeRF (39.1 PSNR) and SCARED (27.3 PSNR), and delivers competitive EndoVis18 segmentation, matching or exceeding strong 2D baselines for binary segmentation tasks (0.93 DSC) and remaining competitive for multi-label segmentation (0.77 DSC).

Jielin Qiu, William Han, Xuandong Zhao et al.

With the development of large models, watermarks are increasingly employed to assert copyright, verify authenticity, or monitor content distribution. As applications become more multimodal, the utility of watermarking techniques becomes even more critical. The effectiveness and reliability of these watermarks largely depend on their robustness to various disturbances. However, the robustness of these watermarks in real-world scenarios, particularly under perturbations and corruption, is not well understood. To highlight the significance of robustness in watermarking techniques, our study evaluated the robustness of watermarked content generated by image and text generation models against common real-world image corruptions and text perturbations. Our results could pave the way for the development of more robust watermarking techniques in the future. Our project website can be found at \url{https://mmwatermark-robustness.github.io/}.

Jielin Qiu, William Han, Winfred Wang et al.

Open-domain real-world entity recognition is essential yet challenging, involving identifying various entities in diverse environments. The lack of a suitable evaluation dataset has been a major obstacle in this field due to the vast number of entities and the extensive human effort required for data curation. We introduce Entity6K, a comprehensive dataset for real-world entity recognition, featuring 5,700 entities across 26 categories, each supported by 5 human-verified images with annotations. Entity6K offers a diverse range of entity names and categorizations, addressing a gap in existing datasets. We conducted benchmarks with existing models on tasks like image captioning, object detection, zero-shot classification, and dense captioning to demonstrate Entity6K's effectiveness in evaluating models' entity recognition capabilities. We believe Entity6K will be a valuable resource for advancing accurate entity recognition in open-domain settings.