Zhuoping Zhou

Qipeng Zhan, Zhuoping Zhou, Zexuan Wang et al.

Autoencoders are widely used for dimensionality reduction, based on the assumption that high-dimensional data lies on low-dimensional manifolds. Regularized autoencoders aim to preserve manifold geometry during dimensionality reduction, but existing approaches often suffer from non-injective mappings and overly rigid constraints that limit their effectiveness and robustness. In this work, we identify encoder non-injectivity as a core bottleneck that leads to poor convergence and distorted latent representations. To ensure robustness across data distributions, we formalize the concept of admissible regularization and provide sufficient conditions for its satisfaction. In this work, we propose the Bi-Lipschitz Autoencoder (BLAE), which introduces two key innovations: (1) an injective regularization scheme based on a separation criterion to eliminate pathological local minima, and (2) a bi-Lipschitz relaxation that preserves geometry and exhibits robustness to data distribution drift. Empirical results on diverse datasets show that BLAE consistently outperforms existing methods in preserving manifold structure while remaining resilient to sampling sparsity and distribution shifts. Code is available at https://github.com/qipengz/BLAE.

Zhuoping Zhou, Davoud Ataee Tarzanagh, Bojian Hou et al.

This paper investigates fairness and bias in Canonical Correlation Analysis (CCA), a widely used statistical technique for examining the relationship between two sets of variables. We present a framework that alleviates unfairness by minimizing the correlation disparity error associated with protected attributes. Our approach enables CCA to learn global projection matrices from all data points while ensuring that these matrices yield comparable correlation levels to group-specific projection matrices. Experimental evaluation on both synthetic and real-world datasets demonstrates the efficacy of our method in reducing correlation disparity error without compromising CCA accuracy.

Zhuoping Zhou, Davoud Ataee Tarzanagh, Bojian Hou et al.

This paper examines the issue of fairness in the estimation of graphical models (GMs), particularly Gaussian, Covariance, and Ising models. These models play a vital role in understanding complex relationships in high-dimensional data. However, standard GMs can result in biased outcomes, especially when the underlying data involves sensitive characteristics or protected groups. To address this, we introduce a comprehensive framework designed to reduce bias in the estimation of GMs related to protected attributes. Our approach involves the integration of the pairwise graph disparity error and a tailored loss function into a nonsmooth multi-objective optimization problem, striving to achieve fairness across different sensitive groups while maintaining the effectiveness of the GMs. Experimental evaluations on synthetic and real-world datasets demonstrate that our framework effectively mitigates bias without undermining GMs' performance.

Bojian Hou, Zhanliang Wang, Zhuoping Zhou et al.

Canonical correlation analysis (CCA) is a technique for finding correlations between different data modalities and learning low-dimensional representations. As fairness becomes crucial in machine learning, fair CCA has gained attention. However, previous approaches often overlook the impact on downstream classification tasks, limiting applicability. We propose a novel fair CCA method for fair representation learning, ensuring the projected features are independent of sensitive attributes, thus enhancing fairness without compromising accuracy. We validate our method on synthetic data and real-world data from the Alzheimer's Disease Neuroimaging Initiative (ADNI), demonstrating its ability to maintain high correlation analysis performance while improving fairness in classification tasks. Our work enables fair machine learning in neuroimaging studies where unbiased analysis is essential. Code is available in https://github.com/ZhanliangAaronWang/FR-CCA-ADNI.

Qipeng Zhan, Zhuoping Zhou, Li Shen

Accurate classification requires not only high predictive accuracy but also well-calibrated confidence estimates. Yet, modern deep neural networks (DNNs) are often overconfident, primarily due to overfitting on the negative log-likelihood (NLL). While focal loss variants alleviate this issue, they typically reduce accuracy, revealing a persistent trade-off between calibration and predictive performance. Motivated by the complementary strengths of generative and discriminative classifiers, we propose Generative Cross-Entropy (GCE), which maximizes $p(x|y)$ and is equivalent to cross-entropy augmented with a class-level confidence regularizer. Under mild conditions, GCE is strictly proper. Across CIFAR-10/100, Tiny-ImageNet, and a medical imaging benchmark, GCE improves both accuracy and calibration over cross-entropy, especially in the long-tailed scenario. Combined with adaptive piecewise temperature scaling (ATS), GCE attains calibration competitive with focal-loss variants without sacrificing accuracy.

Qipeng Zhan, Zhuoping Zhou, Zexuan Wang et al.

Autoencoders have long been considered a nonlinear extension of Principal Component Analysis (PCA). Prior studies have demonstrated that linear autoencoders (LAEs) can recover the ordered, axis-aligned principal components of PCA by incorporating non-uniform $\ell_2$ regularization or by adjusting the loss function. However, these approaches become insufficient in the nonlinear setting, as the remaining variance cannot be properly captured independently of the nonlinear mapping. In this work, we propose a novel autoencoder framework that integrates non-uniform variance regularization with an isometric constraint. This design serves as a natural generalization of PCA, enabling the model to preserve key advantages, such as ordered representations and variance retention, while remaining effective for nonlinear dimensionality reduction tasks.

Zhuoping Zhou, Davoud Ataee Tarzanagh, Sima Didari et al.

Graph-based Retrieval-Augmented Generation (RAG) systems leverage interconnected knowledge structures to capture complex relationships that flat retrieval struggles with, enabling multi-hop reasoning. Yet most existing graph-based methods suffer from (i) heuristic designs lacking theoretical guarantees for subgraph quality or relevance and/or (ii) the use of static exploration strategies that ignore the query's holistic meaning, retrieving neighborhoods or communities regardless of intent. We propose Query-Aware Flow Diffusion RAG (QAFD-RAG), a training-free framework that dynamically adapts graph traversal to each query's holistic semantics. The central innovation is query-aware traversal: during graph exploration, edges are dynamically weighted by how well their endpoints align with the query's embedding, guiding flow along semantically relevant paths while avoiding structurally connected but irrelevant regions. These query-specific reasoning subgraphs enable the first statistical guarantees for query-aware graph retrieval, showing that QAFD-RAG recovers relevant subgraphs with high probability under mild signal-to-noise conditions. The algorithm converges exponentially fast, with complexity scaling with the retrieved subgraph size rather than the full graph. Experiments on question answering and text-to-SQL tasks demonstrate consistent improvements over state-of-the-art graph-based RAG methods.

Qipeng Zhan, Zhuoping Zhou, Zexuan Wang et al.

Autoencoders have emerged as powerful models for visualization and dimensionality reduction based on the fundamental assumption that high-dimensional data is generated from a low-dimensional manifold. A critical challenge in autoencoder design is to preserve the geometric structure of data in the latent space, with existing approaches typically focusing on either global or local geometric properties separately. Global approaches often encounter errors in distance approximation that accumulate, while local methods frequently converge to suboptimal solutions that distort large-scale relationships. We propose Multi-Scale Geometric Autoencoder (MAE), which introduces an asymmetric architecture that simultaneously preserves both scales of the geometric structure by applying global distance constraints to the encoder and local geometric constraints to the decoder. Through theoretical analysis, we establish that this asymmetric design aligns naturally with the distinct roles of the encoder and decoder components. Our comprehensive experiments on both synthetic manifolds and real-world datasets demonstrate that MAE consistently outperforms existing methods across various evaluation metrics.