Riccardo Lattanzi

Xinling Yu, José E. C. Serrallés, Ilias I. Giannakopoulos et al.

We propose Physics-Informed Fourier Networks for Electrical Properties (EP) Tomography (PIFON-EPT), a novel deep learning-based method for EP reconstruction using noisy and/or incomplete magnetic resonance (MR) measurements. Our approach leverages the Helmholtz equation to constrain two networks, responsible for the denoising and completion of the transmit fields, and the estimation of the object's EP, respectively. We embed a random Fourier features mapping into our networks to enable efficient learning of high-frequency details encoded in the transmit fields. We demonstrated the efficacy of PIFON-EPT through several simulated experiments at 3 and 7 tesla (T) MR imaging, and showed that our method can reconstruct physically consistent EP and transmit fields. Specifically, when only $20\%$ of the noisy measured fields were used as inputs, PIFON-EPT reconstructed the EP of a phantom with $\leq 5\%$ error, and denoised and completed the measurements with $\leq 1\%$ error. Additionally, we adapted PIFON-EPT to solve the generalized Helmholtz equation that accounts for gradients of EP between inhomogeneities. This yielded improved results at interfaces between different materials without explicit knowledge of boundary conditions. PIFON-EPT is the first method that can simultaneously reconstruct EP and transmit fields from incomplete noisy MR measurements, providing new opportunities for EPT research.

Xinling Yu, José E. C. Serrallés, Ilias I. Giannakopoulos et al.

Electrical properties (EP), namely permittivity and electric conductivity, dictate the interactions between electromagnetic waves and biological tissue. EP can be potential biomarkers for pathology characterization, such as cancer, and improve therapeutic modalities, such radiofrequency hyperthermia and ablation. MR-based electrical properties tomography (MR-EPT) uses MR measurements to reconstruct the EP maps. Using the homogeneous Helmholtz equation, EP can be directly computed through calculations of second order spatial derivatives of the measured magnetic transmit or receive fields $(B_{1}^{+}, B_{1}^{-})$. However, the numerical approximation of derivatives leads to noise amplifications in the measurements and thus erroneous reconstructions. Recently, a noise-robust supervised learning-based method (DL-EPT) was introduced for EP reconstruction. However, the pattern-matching nature of such network does not allow it to generalize for new samples since the network's training is done on a limited number of simulated data. In this work, we leverage recent developments on physics-informed deep learning to solve the Helmholtz equation for the EP reconstruction. We develop deep neural network (NN) algorithms that are constrained by the Helmholtz equation to effectively de-noise the $B_{1}^{+}$ measurements and reconstruct EP directly at an arbitrarily high spatial resolution without requiring any known $B_{1}^{+}$ and EP distribution pairs.

Ilias I. Giannakopoulos, Lokesh B Gautham Muthukumar, Yvonne W. Lui et al.

Parallel imaging techniques reduce magnetic resonance imaging (MRI) scan time but image quality degrades as the acceleration factor increases. In clinical practice, conservative acceleration factors are chosen because no mechanism exists to automatically assess the diagnostic quality of undersampled reconstructions. This work introduces a general framework for pixel-wise uncertainty quantification in parallel MRI reconstructions, enabling automatic identification of unreliable regions without access to any ground-truth reference image. Our method integrates conformal quantile regression with image reconstruction methods to estimate statistically rigorous pixel-wise uncertainty intervals. We trained and evaluated our model on Cartesian undersampled brain and knee data obtained from the fastMRI dataset using acceleration factors ranging from 2 to 10. An end-to-end Variational Network was used for image reconstruction. Quantitative experiments demonstrate strong agreement between predicted uncertainty maps and true reconstruction error. Using our method, the corresponding Pearson correlation coefficient was higher than 90% at acceleration levels at and above four-fold; whereas it dropped to less than 70% when the uncertainty was computed using a simpler a heuristic notion (magnitude of the residual). Qualitative examples further show the uncertainty maps based on quantile regression capture the magnitude and spatial distribution of reconstruction errors across acceleration factors, with regions of elevated uncertainty aligning with pathologies and artifacts. The proposed framework enables evaluation of reconstruction quality without access to fully-sampled ground-truth reference images. It represents a step toward adaptive MRI acquisition protocols that may be able to dynamically balance scan time and diagnostic reliability.