Yanggan Gu

Guanghao Zhu, Zeyu Liu, Zhitian Hou et al.

Large-scale biomedical image-text datasets extracted from scientific literature provide valuable resources for medical multimodal model training. These datasets are commonly organized as image-caption pairs; however, figure captions are often short, context-dependent, and only partially informative without the surrounding article text. At the same time, large-scale automatic extraction introduces structural noise such as missing captions, residual markup, duplicated context, and incoherent multi-paragraph figure descriptions. We revisit data construction for medical multimodal continued pretraining (CPT) and present PMC-InterCPT, a context-grounded biomedical interleaved corpus that incorporates figure-referencing body text in addition to captions. Our pipeline recovers missing captions, cleans caption and context text, reconstructs coherent interleaved image-text samples, and applies LLM-supervised medical relevance and quality classifiers to filter noisy records. We further reveal strong modality imbalance in the resulting corpus and introduce a four-bucket evidence taxonomy for modality-aware resampling. Through CPT followed by supervised fine-tuning (SFT) on Qwen3.5-4B-Base, PMC-InterCPT effectively improves medical and general multimodal performance while using fewer CPT tokens than the raw source pool. The experimental results also illustrate the complementarity between the data quality and modality for medical multimodal CPT.

Yuanyi Wang, Yanggan Gu, Su Lu et al.

Weight-space model merging is usually formulated as an algebraic operation on checkpoints, yet at LLM scale the limiting resource is often the set of expert weights that must be read. We introduce MergePipe, a budget-aware execution layer that casts LLM merging as an \emph{expert access-set} problem: given a merge operator and a checkpoint family in a shared weight coordinate system, choose which expert delta blocks to access under an explicit I/O budget. MergePipe indexes parameter blocks, builds deterministic access plans, and executes the induced budgeted merge with replayable manifests. The plan is budget-sound by construction and recovers the full-read merge at full budget; for fixed-coefficient additive operators, the omitted-update error is bounded by the norm of omitted deltas. Across Qwen and Llama merging workloads, MergePipe reduces expert-read I/O by up to an order of magnitude and achieves up to $11\times$ speedups. Representative budget sweeps show $O(10^{-3})$ parameter deviation from full-read merges and no monotonic degradation on downstream benchmarks.

Sirui Huang, Yanggan Gu, Xuming Hu et al.

Large language models (LLMs) have made remarkable progress in various natural language processing tasks as a benefit of their capability to comprehend and reason with factual knowledge. However, a significant amount of factual knowledge is stored in structured data, which possesses unique characteristics that differ from the unstructured texts used for pretraining. This difference can introduce imperceptible inference parameter deviations, posing challenges for LLMs in effectively utilizing and reasoning with structured data to accurately infer factual knowledge. To this end, we propose a benchmark named StructFact, to evaluate the structural reasoning capabilities of LLMs in inferring factual knowledge. StructFact comprises 8,340 factual questions encompassing various tasks, domains, timelines, and regions. This benchmark allows us to investigate the capability of LLMs across five factual tasks derived from the unique characteristics of structural facts. Extensive experiments on a set of LLMs with different training strategies reveal the limitations of current LLMs in inferring factual knowledge from structured data. We present this benchmark as a compass to navigate the strengths and weaknesses of LLMs in reasoning with structured data for knowledge-sensitive tasks, and to encourage advancements in related real-world applications. Please find our code at https://github.com/EganGu/StructFact.

Yuanyi Wang, Su Lu, Yanggan Gu et al.

On-policy distillation (OPD) trains a student on its own rollouts with token-level teacher supervision. Recent selective OPD methods exploit the non-uniformity of OPD signals by prioritizing high-entropy or high-disagreement tokens. We revisit this principle and ask: which token-level teacher signals are actually learnable? Using a fixed-context diagnostic that measures same-context teacher-student KL reduction, we show that raw KL disagreement is a coarse proxy for learning value. It conflates learnable disagreement, where the teacher assigns corrective mass to the student's top-K candidates, with incompatible disagreement, where the teacher places mass mostly off the student's current support. We formalize this local compatibility as token teachability and show that it better predicts fixed-context improvement than raw KL alone. Motivated by this finding, we propose Teachability-Aware OPD (TA-OPD), a lightweight token-position selection method that applies OPD loss to high-teachability positions without reward models or verifiers. Across Qwen2.5 and Qwen 3 teacher-student settings, TA-OPD often surpasses full-token OPD with only 5% retained tokens and improves over entropy- and divergence-based baselines. Our results reframe selective OPD as selecting learnable teacher signals rather than merely salient tokens.

Yanggan Gu, Yang Hou, Zhefeng Wang et al.

This work revisits the topic of jointly parsing constituency and dependency trees, i.e., to produce compatible constituency and dependency trees simultaneously for input sentences, which is attractive considering that the two types of trees are complementary in representing syntax. The original work of Zhou and Zhao (2019) performs joint parsing only at the inference phase. They train two separate parsers under the multi-task learning framework (i.e., one shared encoder and two independent decoders). They design an ad-hoc dynamic programming-based decoding algorithm of $O(n^5)$ time complexity for finding optimal compatible tree pairs. Compared to their work, we make progress in three aspects: (1) adopting a much more efficient decoding algorithm of $O(n^4)$ time complexity, (2) exploring joint modeling at the training phase, instead of only at the inference phase, (3) proposing high-order scoring components to promote constituent-dependency interaction. We conduct experiments and analysis on seven languages, covering both rich-resource and low-resource scenarios. Results and analysis show that joint modeling leads to a modest overall performance boost over separate modeling, but substantially improves the complete matching ratio of whole trees, thanks to the explicit modeling of tree compatibility.

Yunkai Dang, Mengxi Gao, Yibo Yan et al. · tsinghua

Multimodal large language models (MLLMs) have recently achieved state-of-the-art performance on tasks ranging from visual question answering to video understanding. However, existing studies have concentrated mainly on visual-textual misalignment, leaving largely unexplored the MLLMs' ability to preserve an originally correct answer when confronted with misleading information. We reveal a response uncertainty phenomenon: across nine standard datasets, twelve state-of-the-art open-source MLLMs overturn a previously correct answer in 65% of cases after receiving a single deceptive cue. To systematically quantify this vulnerability, we propose a two-stage evaluation pipeline: (1) elicit each model's original response on unperturbed inputs; (2) inject explicit (false-answer hints) and implicit (contextual contradictions) misleading instructions, and compute the misleading rate - the fraction of correct-to-incorrect flips. Leveraging the most susceptible examples, we curate the Multimodal Uncertainty Benchmark (MUB), a collection of image-question pairs stratified into low, medium, and high difficulty based on how many of twelve state-of-the-art MLLMs they mislead. Extensive evaluation on twelve open-source and five closed-source models reveals a high uncertainty: average misleading rates exceed 86%, with explicit cues over 67.19% and implicit cues over 80.67%. To reduce the misleading rate, we then fine-tune all open-source MLLMs on a compact 2000-sample mixed-instruction dataset, reducing misleading rates to 6.97% (explicit) and 32.77% (implicit), boosting consistency by nearly 29.37% on highly deceptive inputs, and slightly improving accuracy on standard benchmarks. Our code is available at https://github.com/Yunkaidang/uncertainty

Wenjun Wang, Yanggan Gu, Shuo Cai et al.

Low-resource deployment constraints have made model quantization essential for deploying neural networks while preserving performance. Meanwhile, model merging has become an increasingly practical low-resource strategy for integrating multiple task- or domain-specialized experts into a single model without joint training or multi-model serving. Together, quantization and model merging enable an efficient low-resource deployment pipeline by integrating multiple experts into one low-bit model. We formulate this setting as Post-Merge Quantization (PMQ). We show that directly applying post-training quantization (PTQ) to a merged model is unreliable because two distinct deviations are coupled: the quantization deviation introduced by low-bit reconstruction and the expert-relative merging deviation inherited from model merging. To mitigate these deviations, we propose E-PMQ, an expert-guided PMQ framework that uses source expert weights to provide expert- guided output targets during layer-wise calibration, together with merged-weight anchoring to stabilize the calibration and preserve the integrated behavior of the merged model. On CLIP-ViT-B/32 eight-task merging, E-PMQ improves 4-bit GPTQ from 65.0% to 73.6% under Task Arithmetic and from 69.1% to 74.8% under TIES-Merging. On harder settings, E-PMQ improves GPTQ from 34.8% to 76.7% on 20-task CLIP-ViT-L/14 and from 78.26% to 83.34% on FLAN-T5- base GLUE. These results demonstrate that E-PMQ enables effective post-merge quantization and low-bit deployment.

Yanggan Gu, Shuo Cai, Zihao Wang et al.

Model merging combines task experts into one model and avoids joint training, retraining, or deploying many expert models, but the merged model often still underperforms task experts. We study this performance gap through feature drift, the difference between features produced by the merged model and by the expert on the same input. Our theory decomposes this drift into upstream propagation and local mismatch, tracks how it propagates and combines through later layers in forward order, and links final feature drift to output drift. This view motivates FeatCal, which uses a small calibration set to calibrate the merged model weights layer by layer in forward order, reducing feature drift while staying close to merged weights and preserving the benefits of model merging. FeatCal uses an efficient closed-form solution to update model weights, with no gradient descent, iterative optimization, or extra modules. On the main CLIP and GLUE benchmarks, FeatCal beats Surgery and ProbSurgery, the closest post-merging calibration baselines: 85.5% vs. 77.0%/78.8% on CLIP-ViT-B/32 Task Arithmetic (TA) and 85.2% vs. 83.7%/82.2% on FLAN-T5-base GLUE. On CLIP-ViT-B/32, 8 examples per task reach 82.9%, and 256 examples per task take 53 seconds, about 4x faster than both baselines, showing better sample efficiency and lower calibration cost.

Yuanyi Wang, Zhaoyi Yan, Yiming Zhang et al.

Recent advances in large language models (LLMs) have intensified efforts to fuse heterogeneous open-source models into a unified system that inherits their complementary strengths. Existing logit-based fusion methods maintain inference efficiency but treat vocabulary dimensions independently, overlooking semantic dependencies encoded by cross-dimension interactions. These dependencies reflect how token types interact under a model's internal reasoning and are essential for aligning models with diverse generation behaviors. To explicitly model these dependencies, we propose \textbf{InfiGFusion}, the first structure-aware fusion framework with a novel \textit{Graph-on-Logits Distillation} (GLD) loss. Specifically, we retain the top-$k$ logits per output and aggregate their outer products across sequence positions to form a global co-activation graph, where nodes represent vocabulary channels and edges quantify their joint activations. To ensure scalability and efficiency, we design a sorting-based closed-form approximation that reduces the original $O(n^4)$ cost of Gromov-Wasserstein distance to $O(n \log n)$, with provable approximation guarantees. Experiments across multiple fusion settings show that GLD consistently improves fusion quality and stability. InfiGFusion outperforms SOTA models and fusion baselines across 11 benchmarks spanning reasoning, coding, and mathematics. It shows particular strength in complex reasoning tasks, with +35.6 improvement on Multistep Arithmetic and +37.06 on Causal Judgement over SFT, demonstrating superior multi-step and relational inference.

Yuanyi Wang, Yifan Yang, Su Lu et al.

Continual post-training aims to extend large language models (LLMs) with new knowledge, skills, and behaviors, yet it remains unclear when sequential updates enable capability transfer and when they cause catastrophic forgetting. Existing methods mitigate forgetting through sequential fine-tuning, replay, regularization, or model merging, but offer limited criteria for determining when incorporating new updates is beneficial or harmful. In this work, we study LLM continual post-training through three questions: What drives forgetting? When do sequentially acquired capabilities transfer or interfere? How can compatibility be used to control update integration? We address these questions through task geometry: we represent each post-training task by its parameter update and study the covariance geometry induced by the update. Our central finding is that: forgetting can be considered as a state-relative update-integration failure, it arises when the covariance geometries induced by tasks misalign with the geometry of the evolving model state. Sequential updates transfer when they remain compatible with the model state shaped by previous updates, and interfere when state-relative geometry conflict becomes high. Motivated by this finding, we propose Geometry-Conflict Wasserstein Merging (GCWM), a data-free update-integration method that constructs a shared Wasserstein metric via Gaussian Wasserstein barycenters and uses geometry conflict to gate geometry-aware correction. Across Qwen3 0.6B--14B on domain-continual and capability-continual settings, GCWM consistently outperforms data-free baselines, improving retention and final performance without replay data. These results identify geometry conflict as both an explanatory signal for forgetting and a practical control signal for LLM continual post-training.

Yuanyi Wang, Yanggan Gu, Zihao Wang et al.

Large language model (LLM) merging has become a key technique in modern LLM development pipelines, enabling the integration of multiple task- or domain-specific expert models without retraining. However, as the number of experts grows, existing merging implementations treat model parameters as unstructured files and execute merges in a stateless, one-shot manner, leading to excessive disk I/O, redundant parameter scans, and poor scalability. In this paper, we present \textbf{MergePipe}, a parameter management system for scalable LLM merging. MergePipe is the first system that treats LLM merging as a data management and execution problem, and introduces a catalog-driven abstraction over model parameters, merge plans, and execution lineage. At its core, MergePipe employs a cost-aware planner that explicitly models expert parameter I/O and enforces user-specified I/O budgets, followed by a streaming execution engine that materializes merged models under transactional guarantees. Our key insight is that while base model reads and output writes are unavoidable, expert parameter reads dominate merge cost and constitute the primary optimization target. By making expert access budget-aware throughout planning and execution, MergePipe mitigates the $O(K)$ I/O growth of naive pipelines and achieves predictable scaling behavior. Experiments show that MergePipe reduces total I/O by up to an order of magnitude and delivers up to $11\times$ end-to-end speedups (up to 90\% wall-time reduction) over state-of-the-art LLM merging pipelines.

Yanggan Gu, Yuanyi Wang, Zhaoyi Yan et al.

Model fusion combines multiple Large Language Models (LLMs) with different strengths into a more powerful, integrated model through lightweight training methods. Existing works on model fusion focus primarily on supervised fine-tuning (SFT), leaving preference alignment (PA) --a critical phase for enhancing LLM performance--largely unexplored. The current few fusion methods on PA phase, like WRPO, simplify the process by utilizing only response outputs from source models while discarding their probability information. To address this limitation, we propose InfiFPO, a preference optimization method for implicit model fusion. InfiFPO replaces the reference model in Direct Preference Optimization (DPO) with a fused source model that synthesizes multi-source probabilities at the sequence level, circumventing complex vocabulary alignment challenges in previous works and meanwhile maintaining the probability information. By introducing probability clipping and max-margin fusion strategies, InfiFPO enables the pivot model to align with human preferences while effectively distilling knowledge from source models. Comprehensive experiments on 11 widely-used benchmarks demonstrate that InfiFPO consistently outperforms existing model fusion and preference optimization methods. When using Phi-4 as the pivot model, InfiFPO improve its average performance from 79.95 to 83.33 on 11 benchmarks, significantly improving its capabilities in mathematics, coding, and reasoning tasks.

Sirui Huang, Hanqian Li, Yanggan Gu et al.

Given that substantial amounts of domain-specific knowledge are stored in structured formats, such as web data organized through HTML, Large Language Models (LLMs) are expected to fully comprehend this structured information to broaden their applications in various real-world downstream tasks. Current approaches for applying LLMs to structured data fall into two main categories: serialization-based and operation-based methods. Both approaches, whether relying on serialization or using SQL-like operations as an intermediary, encounter difficulties in fully capturing structural relationships and effectively handling sparse data. To address these unique characteristics of structured data, we propose HyperG, a hypergraph-based generation framework aimed at enhancing LLMs' ability to process structured knowledge. Specifically, HyperG first augment sparse data with contextual information, leveraging the generative power of LLMs, and incorporate a prompt-attentive hypergraph learning (PHL) network to encode both the augmented information and the intricate structural relationships within the data. To validate the effectiveness and generalization of HyperG, we conduct extensive experiments across two different downstream tasks requiring structured knowledge.

Yanggan Gu, Junzhuo Li, Sirui Huang et al.

Aligning small language models (SLMs) with human values typically involves distilling preference knowledge from large language models (LLMs). However, existing distillation methods model preference knowledge in teacher LLMs by comparing pairwise responses, overlooking the extent of difference between responses. This limitation hinders student SLMs from capturing the nuanced preferences for multiple responses. In this paper, we propose a Preference-Aligned Distillation (PAD) framework, which models teacher's preference knowledge as a probability distribution over all potential preferences, thereby providing more nuanced supervisory signals. Our insight in developing PAD is rooted in the demonstration that language models can serve as reward functions, reflecting their intrinsic preferences. Based on this, PAD comprises three key steps: (1) sampling diverse responses using high-temperature; (2) computing rewards for both teacher and student to construct their intrinsic preference; and (3) training the student's intrinsic preference distribution to align with the teacher's. Experiments on four mainstream alignment benchmarks demonstrate that PAD consistently and significantly outperforms existing approaches, achieving over 20\% improvement on AlpacaEval 2 and Arena-Hard, indicating superior alignment with human preferences. Notably, on MT-Bench, using the \textsc{Gemma} model family, the student trained by PAD surpasses its teacher, further validating the effectiveness of our PAD.

Yuanyi Wang, Yanggan Gu, Yiming Zhang et al.

We study empirical scaling laws for language model merging measured by cross-entropy. Despite its wide practical use, merging lacks a quantitative rule that predicts returns as we add experts or scale the model size. We identify a compact power law that links model size and expert number: the size-dependent floor decreases with model capacity, while the merging tail exhibits clear diminishing returns in the number of experts. The law holds in-domain and cross-domain, tightly fits measured curves across diverse architectures and methods (Average, TA, TIES, DARE), and explains two robust regularities: most gains arrive early, and variability shrinks as more experts are included. Building on this, we present a simple theory that explains why gains fall roughly as 1/k and links the floor and tail to properties of the base model and the diversity across domains. This law enables predictive planning: estimate how many experts are needed to reach a target loss, decide when to stop adding experts, and trade off scaling the base model versus adding experts under a fixed budget--turning merging from heuristic practice into a computationally efficient, planable alternative to multitask training. This suggests a scaling principle for distributed generative AI: predictable gains can be achieved by composing specialists, offering a complementary path toward AGI-level systems.