Nima Shoghi

h-index1
2papers
14citations

2 Papers

27.5MTRL-SCIJun 17, 2022Code
The Open Catalyst 2022 (OC22) Dataset and Challenges for Oxide Electrocatalysts

Richard Tran, Janice Lan, Muhammed Shuaibi et al. · baidu, cmu

The development of machine learning models for electrocatalysts requires a broad set of training data to enable their use across a wide variety of materials. One class of materials that currently lacks sufficient training data is oxides, which are critical for the development of OER catalysts. To address this, we developed the OC22 dataset, consisting of 62,331 DFT relaxations (~9,854,504 single point calculations) across a range of oxide materials, coverages, and adsorbates. We define generalized total energy tasks that enable property prediction beyond adsorption energies; we test baseline performance of several graph neural networks; and we provide pre-defined dataset splits to establish clear benchmarks for future efforts. In the most general task, GemNet-OC sees a ~36% improvement in energy predictions when combining the chemically dissimilar OC20 and OC22 datasets via fine-tuning. Similarly, we achieved a ~19% improvement in total energy predictions on OC20 and a ~9% improvement in force predictions in OC22 when using joint training. We demonstrate the practical utility of a top performing model by capturing literature adsorption energies and important OER scaling relationships. We expect OC22 to provide an important benchmark for models seeking to incorporate intricate long-range electrostatic and magnetic interactions in oxide surfaces. Dataset and baseline models are open sourced, and a public leaderboard is available to encourage continued community developments on the total energy tasks and data.

2.6LGJul 30, 2024
Distribution Learning for Molecular Regression

Nima Shoghi, Pooya Shoghi, Anuroop Sriram et al. · baidu, cmu

Using "soft" targets to improve model performance has been shown to be effective in classification settings, but the usage of soft targets for regression is a much less studied topic in machine learning. The existing literature on the usage of soft targets for regression fails to properly assess the method's limitations, and empirical evaluation is quite limited. In this work, we assess the strengths and drawbacks of existing methods when applied to molecular property regression tasks. Our assessment outlines key biases present in existing methods and proposes methods to address them, evaluated through careful ablation studies. We leverage these insights to propose Distributional Mixture of Experts (DMoE): A model-independent, and data-independent method for regression which trains a model to predict probability distributions of its targets. Our proposed loss function combines the cross entropy between predicted and target distributions and the L1 distance between their expected values to produce a loss function that is robust to the outlined biases. We evaluate the performance of DMoE on different molecular property prediction datasets -- Open Catalyst (OC20), MD17, and QM9 -- across different backbone model architectures -- SchNet, GemNet, and Graphormer. Our results demonstrate that the proposed method is a promising alternative to classical regression for molecular property prediction tasks, showing improvements over baselines on all datasets and architectures.