Yifeng Wang

Hao Bian, Zhuchen Shao, Yang Chen et al.

With the development of computational pathology, deep learning methods for Gleason grading through whole slide images (WSIs) have excellent prospects. Since the size of WSIs is extremely large, the image label usually contains only slide-level label or limited pixel-level labels. The current mainstream approach adopts multi-instance learning to predict Gleason grades. However, some methods only considering the slide-level label ignore the limited pixel-level labels containing rich local information. Furthermore, the method of additionally considering the pixel-level labels ignores the inaccuracy of pixel-level labels. To address these problems, we propose a mixed supervision Transformer based on the multiple instance learning framework. The model utilizes both slide-level label and instance-level labels to achieve more accurate Gleason grading at the slide level. The impact of inaccurate instance-level labels is further reduced by introducing an efficient random masking strategy in the mixed supervision training process. We achieve the state-of-the-art performance on the SICAPv2 dataset, and the visual analysis shows the accurate prediction results of instance level. The source code is available at https://github.com/bianhao123/Mixed_supervision.

Yifeng Wang, Zhi Tu, Yiwen Xiang et al. · cmu

The success of Computer Vision (CV) relies heavily on manually annotated data. However, it is prohibitively expensive to annotate images in key domains such as healthcare, where data labeling requires significant domain expertise and cannot be easily delegated to crowd workers. To address this challenge, we propose a neuro-symbolic approach called Rapid, which infers image labeling rules from a small amount of labeled data provided by domain experts and automatically labels unannotated data using the rules. Specifically, Rapid combines pre-trained CV models and inductive logic learning to infer the logic-based labeling rules. Rapid achieves a labeling accuracy of 83.33% to 88.33% on four image labeling tasks with only 12 to 39 labeled samples. In particular, Rapid significantly outperforms finetuned CV models in two highly specialized tasks. These results demonstrate the effectiveness of Rapid in learning from small data and its capability to generalize among different tasks. Code and our dataset are publicly available at https://github.com/Neural-Symbolic-Image-Labeling/

Yifeng Wang, Luyang Luo, Mingxiang Wu et al.

Collecting annotations from multiple independent sources could mitigate the impact of potential noises and biases from a single source, which is a common practice in medical image segmentation. Learning segmentation networks from multi-source annotations remains a challenge due to the uncertainties brought by the variance of annotations and the quality of images. In this paper, we propose an Uncertainty-guided Multi-source Annotation Network (UMA-Net), which guides the training process by uncertainty estimation at both the pixel and the image levels. First, we developed the annotation uncertainty estimation module (AUEM) to learn the pixel-wise uncertainty of each annotation, which then guided the network to learn from reliable pixels by weighted segmentation loss. Second, a quality assessment module (QAM) was proposed to assess the image-level quality of the input samples based on the former assessed annotation uncertainties. Importantly, we introduced an auxiliary predictor to learn from the low-quality samples instead of discarding them, which ensured the preservation of their representation knowledge in the backbone without directly accumulating errors within the primary predictor. Extensive experiments demonstrated the effectiveness and feasibility of our proposed UMA-Net on various datasets, including 2D chest X-ray segmentation, fundus image segmentation, and 3D breast DCE-MRI segmentation.

Ziqing Li, Xuexin Yu, Xiaocong Lian et al.

Body Mass Index (BMI), age, height and weight are important indicators of human health conditions, which can provide useful information for plenty of practical purposes, such as health care, monitoring and re-identification. Most existing methods of health indicator prediction mainly use front-view body or face images. These inputs are hard to be obtained in daily life and often lead to the lack of robustness for the models, considering their strict requirements on view and pose. In this paper, we propose to employ gait videos to predict health indicators, which are more prevalent in surveillance and home monitoring scenarios. However, the study of health indicator prediction from gait videos using deep learning was hindered due to the small amount of open-sourced data. To address this issue, we analyse the similarity and relationship between pose estimation and health indicator prediction tasks, and then propose a paradigm enabling deep learning for small health indicator datasets by pre-training on the pose estimation task. Furthermore, to better suit the health indicator prediction task, we bring forward Global-Local Aware aNd Centrosymmetric Encoder (GLANCE) module. It first extracts local and global features by progressive convolutions and then fuses multi-level features by a centrosymmetric double-path hourglass structure in two different ways. Experiments demonstrate that the proposed paradigm achieves state-of-the-art results for predicting health indicators on MoVi, and that the GLANCE module is also beneficial for pose estimation on 3DPW.

Ke Chen, Yifeng Wang, Yufei Zhou et al. · cmu

In the field of Alzheimer's disease diagnosis, segmentation and classification tasks are inherently interconnected. Sharing knowledge between models for these tasks can significantly improve training efficiency, particularly when training data is scarce. However, traditional knowledge distillation techniques often struggle to bridge the gap between segmentation and classification due to the distinct nature of tasks and different model architectures. To address this challenge, we propose a dual-stream pipeline that facilitates cross-task and cross-architecture knowledge sharing. Our approach introduces a dual-stream embedding module that unifies feature representations from segmentation and classification models, enabling dimensional integration of these features to guide the classification model. We validated our method on multiple 3D datasets for Alzheimer's disease diagnosis, demonstrating significant improvements in classification performance, especially on small datasets. Furthermore, we extended our pipeline with a residual temporal attention mechanism for early diagnosis, utilizing images taken before the atrophy of patients' brain mass. This advancement shows promise in enabling diagnosis approximately six months earlier in mild and asymptomatic stages, offering critical time for intervention.

Zijie Fang, Yihan Liu, Yifeng Wang et al.

Biomarker detection is an indispensable part in the diagnosis and treatment of low-grade glioma (LGG). However, current LGG biomarker detection methods rely on expensive and complex molecular genetic testing, for which professionals are required to analyze the results, and intra-rater variability is often reported. To overcome these challenges, we propose an interpretable deep learning pipeline, a Multi-Biomarker Histomorphology Discoverer (Multi-Beholder) model based on the multiple instance learning (MIL) framework, to predict the status of five biomarkers in LGG using only hematoxylin and eosin-stained whole slide images and slide-level biomarker status labels. Specifically, by incorporating the one-class classification into the MIL framework, accurate instance pseudo-labeling is realized for instance-level supervision, which greatly complements the slide-level labels and improves the biomarker prediction performance. Multi-Beholder demonstrates superior prediction performance and generalizability for five LGG biomarkers (AUROC=0.6469-0.9735) in two cohorts (n=607) with diverse races and scanning protocols. Moreover, the excellent interpretability of Multi-Beholder allows for discovering the quantitative and qualitative correlations between biomarker status and histomorphology characteristics. Our pipeline not only provides a novel approach for biomarker prediction, enhancing the applicability of molecular treatments for LGG patients but also facilitates the discovery of new mechanisms in molecular functionality and LGG progression.

Peng Gao, Ke Li, Di Wang et al.

Cross-resolution land cover mapping aims to produce high-resolution semantic predictions from coarse or low-resolution supervision, yet the severe resolution mismatch makes effective learning highly challenging. Existing weakly supervised approaches often struggle to align fine-grained spatial structures with coarse labels, leading to noisy supervision and degraded mapping accuracy. To tackle this problem, we propose DDTM, a dual-branch weakly supervised framework that explicitly decouples local semantic refinement from global contextual reasoning. Specifically, DDTM introduces a diffusion-based branch to progressively refine fine-scale local semantics under coarse supervision, while a transformer-based branch enforces long-range contextual consistency across large spatial extents. In addition, we design a pseudo-label confidence evaluation module to mitigate noise induced by cross-resolution inconsistencies and to selectively exploit reliable supervisory signals. Extensive experiments demonstrate that DDTM establishes a new state-of-the-art on the Chesapeake Bay benchmark, achieving 66.52\% mIoU and substantially outperforming prior weakly supervised methods. The code is available at https://github.com/gpgpgp123/DDTM.

Mengkang Hu, Yuhang Zhou, Wendong Fan et al.

Large Language Model (LLM)-based multi-agent systems show promise for automating real-world tasks but struggle to transfer across domains due to their domain-specific nature. Current approaches face two critical shortcomings: they require complete architectural redesign and full retraining of all components when applied to new domains. We introduce Workforce, a hierarchical multi-agent framework that decouples strategic planning from specialized execution through a modular architecture comprising: (i) a domain-agnostic Planner for task decomposition, (ii) a Coordinator for subtask management, and (iii) specialized Workers with domain-specific tool-calling capabilities. This decoupling enables cross-domain transferability during both inference and training phases: During inference, Workforce seamlessly adapts to new domains by adding or modifying worker agents; For training, we introduce Optimized Workforce Learning (OWL), which improves generalization across domains by optimizing a domain-agnostic planner with reinforcement learning from real-world feedback. To validate our approach, we evaluate Workforce on the GAIA benchmark, covering various realistic, multi-domain agentic tasks. Experimental results demonstrate Workforce achieves open-source state-of-the-art performance (69.70%), outperforming commercial systems like OpenAI's Deep Research by 2.34%. More notably, our OWL-trained 32B model achieves 52.73% accuracy (+16.37%) and demonstrates performance comparable to GPT-4o on challenging tasks. To summarize, by enabling scalable generalization and modular domain transfer, our work establishes a foundation for the next generation of general-purpose AI assistants.

Yifeng Wang, Zhouhong Gu, Siwei Zhang et al.

Explainable fake news detection predicts the authenticity of news items with annotated explanations. Today, Large Language Models (LLMs) are known for their powerful natural language understanding and explanation generation abilities. However, presenting LLMs for explainable fake news detection remains two main challenges. Firstly, fake news appears reasonable and could easily mislead LLMs, leaving them unable to understand the complex news-faking process. Secondly, utilizing LLMs for this task would generate both correct and incorrect explanations, which necessitates abundant labor in the loop. In this paper, we propose LLM-GAN, a novel framework that utilizes prompting mechanisms to enable an LLM to become Generator and Detector and for realistic fake news generation and detection. Our results demonstrate LLM-GAN's effectiveness in both prediction performance and explanation quality. We further showcase the integration of LLM-GAN to a cloud-native AI platform to provide better fake news detection service in the cloud.

Zhuchen Shao, Liuxi Dai, Yifeng Wang et al.

Multiple Instance Learning (MIL), a powerful strategy for weakly supervised learning, is able to perform various prediction tasks on gigapixel Whole Slide Images (WSIs). However, the tens of thousands of patches in WSIs usually incur a vast computational burden for image augmentation, limiting the MIL model's improvement in performance. Currently, the feature augmentation-based MIL framework is a promising solution, while existing methods such as Mixup often produce unrealistic features. To explore a more efficient and practical augmentation method, we introduce the Diffusion Model (DM) into MIL for the first time and propose a feature augmentation framework called AugDiff. Specifically, we employ the generation diversity of DM to improve the quality of feature augmentation and the step-by-step generation property to control the retention of semantic information. We conduct extensive experiments over three distinct cancer datasets, two different feature extractors, and three prevalent MIL algorithms to evaluate the performance of AugDiff. Ablation study and visualization further verify the effectiveness. Moreover, we highlight AugDiff's higher-quality augmented feature over image augmentation and its superiority over self-supervised learning. The generalization over external datasets indicates its broader applications.

Zijie Fang, Yifeng Wang, Ye Zhang et al.

Recently, pathological diagnosis has achieved superior performance by combining deep learning models with the multiple instance learning (MIL) framework using whole slide images (WSIs). However, the giga-pixeled nature of WSIs poses a great challenge for efficient MIL. Existing studies either do not consider global dependencies among instances, or use approximations such as linear attentions to model the pair-to-pair instance interactions, which inevitably brings performance bottlenecks. To tackle this challenge, we propose a framework named MamMIL for WSI analysis by cooperating the selective structured state space model (i.e., Mamba) with MIL, enabling the modeling of global instance dependencies while maintaining linear complexity. Specifically, considering the irregularity of the tissue regions in WSIs, we represent each WSI as an undirected graph. To address the problem that Mamba can only process 1D sequences, we further propose a topology-aware scanning mechanism to serialize the WSI graphs while preserving the topological relationships among the instances. Finally, in order to further perceive the topological structures among the instances and incorporate short-range feature interactions, we propose an instance aggregation block based on graph neural networks. Experiments show that MamMIL can achieve advanced performance than the state-of-the-art frameworks. The code can be accessed at https://github.com/Vison307/MamMIL.

YiFeng Wang, Zhun Sun, Keisuke Sakaguchi

We present Activation Residual Hessian Quantization (ARHQ), a post-training weight splitting method designed to mitigate error propagation in low-bit activation-weight quantization. By constructing an input-side residual Hessian from activation quantization residuals (G_x), ARHQ analytically identifies and isolates error-sensitive weight directions into a high-precision low-rank branch. This is achieved via a closed-form truncated SVD on the scaled weight matrix W G^{1/2}_x . Experimental results on Qwen3-4B-Thinking-2507 demonstrate that ARHQ significantly improves layer-wise SNR and preserves downstream reasoning performance on ZebraLogic even under aggressive quantization. The code is available at https://github.com/BeautMoonQ/ARHQ.

Ye Zhang, Yifeng Wang, Zijie Fang et al.

Weakly supervised segmentation methods have gained significant attention due to their ability to reduce the reliance on costly pixel-level annotations during model training. However, the current weakly supervised nuclei segmentation approaches typically follow a two-stage pseudo-label generation and network training process. The performance of the nuclei segmentation heavily relies on the quality of the generated pseudo-labels, thereby limiting its effectiveness. This paper introduces a novel domain-adaptive weakly supervised nuclei segmentation framework using cross-task interaction strategies to overcome the challenge of pseudo-label generation. Specifically, we utilize weakly annotated data to train an auxiliary detection task, which assists the domain adaptation of the segmentation network. To enhance the efficiency of domain adaptation, we design a consistent feature constraint module integrating prior knowledge from the source domain. Furthermore, we develop pseudo-label optimization and interactive training methods to improve the domain transfer capability. To validate the effectiveness of our proposed method, we conduct extensive comparative and ablation experiments on six datasets. The results demonstrate the superiority of our approach over existing weakly supervised approaches. Remarkably, our method achieves comparable or even better performance than fully supervised methods. Our code will be released in https://github.com/zhangye-zoe/DAWN.

Taiqin Chen, Yifeng Wang, Xiaochen Feng et al.

While hyperspectral images (HSI) benefit from numerous spectral channels that provide rich information for classification, the increased dimensionality and sensor variability make them more sensitive to distributional discrepancies across domains, which in turn can affect classification performance. To tackle this issue, hyperspectral single-source domain generalization (SDG) typically employs data augmentation to simulate potential domain shifts and enhance model robustness under the condition of single-source domain training data availability. However, blind augmentation may produce samples misaligned with real-world scenarios, while excessive emphasis on realism can suppress diversity, highlighting a tradeoff between realism and diversity that limits generalization to target domains. To address this challenge, we propose a spectral property-driven data augmentation (SPDDA) that explicitly accounts for the inherent properties of HSI, namely the device-dependent variation in the number of spectral channels and the mixing of adjacent channels. Specifically, SPDDA employs a spectral diversity module that resamples data from the source domain along the spectral dimension to generate samples with varying spectral channels, and constructs a channel-wise adaptive spectral mixer by modeling inter-channel similarity, thereby avoiding fixed augmentation patterns. To further enhance the realism of the augmented samples, we propose a spatial-spectral co-optimization mechanism, which jointly optimizes a spatial fidelity constraint and a spectral continuity self-constraint. Moreover, the weight of the spectral self-constraint is adaptively adjusted based on the spatial counterpart, thus preventing over-smoothing in the spectral dimension and preserving spatial structure. Extensive experiments conducted on three remote sensing benchmarks demonstrate that SPDDA outperforms state-of-the-art methods.

Zijie Fang, Yifeng Wang, Peizhang Xie et al.

Tissue semantic segmentation is one of the key tasks in computational pathology. To avoid the expensive and laborious acquisition of pixel-level annotations, a wide range of studies attempt to adopt the class activation map (CAM), a weakly-supervised learning scheme, to achieve pixel-level tissue segmentation. However, CAM-based methods are prone to suffer from under-activation and over-activation issues, leading to poor segmentation performance. To address this problem, we propose a novel weakly-supervised semantic segmentation framework for histopathological images based on image-mixing synthesis and consistency regularization, dubbed HisynSeg. Specifically, synthesized histopathological images with pixel-level masks are generated for fully-supervised model training, where two synthesis strategies are proposed based on Mosaic transformation and Bézier mask generation. Besides, an image filtering module is developed to guarantee the authenticity of the synthesized images. In order to further avoid the model overfitting to the occasional synthesis artifacts, we additionally propose a novel self-supervised consistency regularization, which enables the real images without segmentation masks to supervise the training of the segmentation model. By integrating the proposed techniques, the HisynSeg framework successfully transforms the weakly-supervised semantic segmentation problem into a fully-supervised one, greatly improving the segmentation accuracy. Experimental results on three datasets prove that the proposed method achieves a state-of-the-art performance. Code is available at https://github.com/Vison307/HisynSeg.

Xingyue Huang, Rishabh, Gregor Franke et al.

Recent advances in Large Language Models (LLMs) have shown that their reasoning capabilities can be significantly improved through Reinforcement Learning with Verifiable Reward (RLVR), particularly in domains like mathematics and programming, where ground-truth correctness can be automatically evaluated. However, extending this success to other reasoning-intensive domains remains challenging due to the scarcity of high-quality, verifiable datasets and the high cost of human supervision. In this work, we introduce the Loong Project: an open-source framework for scalable synthetic data generation and verification across a diverse range of reasoning-intensive domains. The framework consists of two key components: (1) LoongBench, a curated seed dataset containing 8,729 human-vetted examples across 12 domains (e.g., Advanced Mathematics, Chemistry, Logic), each paired with executable code and rich metadata; and (2) LoongEnv, a modular synthetic data generation environment that supports multiple prompting strategies to produce new question-answer-code triples. Together, these components form an agent-environment loop that enables reinforcement learning, where an LLM-based agent is rewarded for generating Chain-of-Thought (CoT) solutions that align with code-executed answers. Empirically, we benchmark LoongBench on a broad suite of both open-source and proprietary LLMs to evaluate domain coverage and reveal performance bottlenecks. In addition, we conduct a comprehensive analysis of synthetic data generated by LoongEnv, examining correctness, difficulty, and diversity. Code and documentation are available at https://github.com/camel-ai/loong.

Xianchao Guan, Zhiyuan Fan, Yifeng Wang et al.

The development of clinical-grade artificial intelligence in pathology is limited by the scarcity of diverse, high-quality annotated datasets. Generative models offer a potential solution but suffer from semantic instability and morphological hallucinations that compromise diagnostic reliability. To address this challenge, we introduce a Correlation-Regulated Alignment Framework for Tissue Synthesis (CRAFTS), the first generative foundation model for pathology-specific text-to-image synthesis. By leveraging a dual-stage training strategy on approximately 2.8 million image-caption pairs, CRAFTS incorporates a novel alignment mechanism that suppresses semantic drift to ensure biological accuracy. This model generates diverse pathological images spanning 30 cancer types, with quality rigorously validated by objective metrics and pathologist evaluations. Furthermore, CRAFTS-augmented datasets enhance the performance across various clinical tasks, including classification, cross-modal retrieval, self-supervised learning, and visual question answering. In addition, coupling CRAFTS with ControlNet enables precise control over tissue architecture from inputs such as nuclear segmentation masks and fluorescence images. By overcoming the critical barriers of data scarcity and privacy concerns, CRAFTS provides a limitless source of diverse, annotated histology data, effectively unlocking the creation of robust diagnostic tools for rare and complex cancer phenotypes.

Ye Zhang, Yu Zhou, Yifeng Wang et al.

Cell instance segmentation is critical to analyzing biomedical images, yet accurately distinguishing tightly touching cells remains a persistent challenge. Existing instance segmentation frameworks, including detection-based, contour-based, and distance mapping-based approaches, have made significant progress, but balancing model performance with computational efficiency remains an open problem. In this paper, we propose a novel cell instance segmentation method inspired by the four-color theorem. By conceptualizing cells as countries and tissues as oceans, we introduce a four-color encoding scheme that ensures adjacent instances receive distinct labels. This reformulation transforms instance segmentation into a constrained semantic segmentation problem with only four predicted classes, substantially simplifying the instance differentiation process. To solve the training instability caused by the non-uniqueness of four-color encoding, we design an asymptotic training strategy and encoding transformation method. Extensive experiments on various modes demonstrate our approach achieves state-of-the-art performance. The code is available at https://github.com/zhangye-zoe/FCIS.

Yifeng Wang, Xueying Zhan, Siyu Huang · cmu

As deep learning continues to evolve, the need for data efficiency becomes increasingly important. Considering labeling large datasets is both time-consuming and expensive, active learning (AL) provides a promising solution to this challenge by iteratively selecting the most informative subsets of examples to train deep neural networks, thereby reducing the labeling cost. However, the effectiveness of different AL algorithms can vary significantly across data scenarios, and determining which AL algorithm best fits a given task remains a challenging problem. This work presents the first differentiable AL strategy search method, named AutoAL, which is designed on top of existing AL sampling strategies. AutoAL consists of two neural nets, named SearchNet and FitNet, which are optimized concurrently under a differentiable bi-level optimization framework. For any given task, SearchNet and FitNet are iteratively co-optimized using the labeled data, learning how well a set of candidate AL algorithms perform on that task. With the optimal AL strategies identified, SearchNet selects a small subset from the unlabeled pool for querying their annotations, enabling efficient training of the task model. Experimental results demonstrate that AutoAL consistently achieves superior accuracy compared to all candidate AL algorithms and other selective AL approaches, showcasing its potential for adapting and integrating multiple existing AL methods across diverse tasks and domains. Code is available at: https://github.com/haizailache999/AutoAL.

Songhan Jiang, Zhengyu Gan, Linghan Cai et al.

Survival prediction, utilizing pathological images and genomic profiles, is increasingly important in cancer analysis and prognosis. Despite significant progress, precise survival analysis still faces two main challenges: (1) The massive pixels contained in whole slide images (WSIs) complicate the process of pathological images, making it difficult to generate an effective representation of the tumor microenvironment (TME). (2) Existing multimodal methods often rely on alignment strategies to integrate complementary information, which may lead to information loss due to the inherent heterogeneity between pathology and genes. In this paper, we propose a Multimodal Cross-Task Interaction (MCTI) framework to explore the intrinsic correlations between subtype classification and survival analysis tasks. Specifically, to capture TME-related features in WSIs, we leverage the subtype classification task to mine tumor regions. Simultaneously, multi-head attention mechanisms are applied in genomic feature extraction, adaptively performing genes grouping to obtain task-related genomic embedding. With the joint representation of pathological images and genomic data, we further introduce a Transport-Guided Attention (TGA) module that uses optimal transport theory to model the correlation between subtype classification and survival analysis tasks, effectively transferring potential information. Extensive experiments demonstrate the superiority of our approaches, with MCTI outperforming state-of-the-art frameworks on three public benchmarks. \href{https://github.com/jsh0792/MCTI}{https://github.com/jsh0792/MCTI}.

Ziyue Wang, Ye Zhang, Yifeng Wang et al.

Deep learning has achieved impressive results in nuclei segmentation, but the massive requirement for pixel-wise labels remains a significant challenge. To alleviate the annotation burden, existing methods generate pseudo masks for model training using point labels. However, the generated masks are inevitably different from the ground truth, and these dissimilarities are not handled reasonably during the network training, resulting in the subpar performance of the segmentation model. To tackle this issue, we propose a framework named DoNuSeg, enabling \textbf{D}ynamic pseudo label \textbf{O}ptimization in point-supervised \textbf{Nu}clei \textbf{Seg}mentation. Specifically, DoNuSeg takes advantage of class activation maps (CAMs) to adaptively capture regions with semantics similar to annotated points. To leverage semantic diversity in the hierarchical feature levels, we design a dynamic selection module to choose the optimal one among CAMs from different encoder blocks as pseudo masks. Meanwhile, a CAM-guided contrastive module is proposed to further enhance the accuracy of pseudo masks. In addition to exploiting the semantic information provided by CAMs, we consider location priors inherent to point labels, developing a task-decoupled structure for effectively differentiating nuclei. Extensive experiments demonstrate that DoNuSeg outperforms state-of-the-art point-supervised methods. The code is available at https://github.com/shinning0821/MICCAI24-DoNuSeg.

Yifeng Wang, Weipeng Li, Thomas Pearce et al.

Correlating neuropathology with neuroimaging findings provides a multiscale view of pathologic changes in the human organ spanning the meso- to micro-scales, and is an emerging methodology expected to shed light on numerous disease states. To gain the most information from this multimodal, multiscale approach, it is desirable to identify precisely where a histologic tissue section was taken from within the organ in order to correlate with the tissue features in exactly the same organ region. Histology-to-organ registration poses an extra challenge, as any given histologic section can capture only a small portion of a human organ. Making use of the capabilities of state-of-the-art deep learning models, we unlock the potential to address and solve such intricate challenges. Therefore, we create the ATOM benchmark dataset, sourced from diverse institutions, with the primary objective of transforming this challenge into a machine learning problem and delivering outstanding outcomes that enlighten the biomedical community. The performance of our RegisMCAN model demonstrates the potential of deep learning to accurately predict where a subregion extracted from an organ image was obtained from within the overall 3D volume. The code and dataset can be found at: https://github.com/haizailache999/Image-Registration/tree/main

Zhuchen Shao, Hao Bian, Yang Chen et al.

Multiple instance learning (MIL) is a powerful tool to solve the weakly supervised classification in whole slide image (WSI) based pathology diagnosis. However, the current MIL methods are usually based on independent and identical distribution hypothesis, thus neglect the correlation among different instances. To address this problem, we proposed a new framework, called correlated MIL, and provided a proof for convergence. Based on this framework, we devised a Transformer based MIL (TransMIL), which explored both morphological and spatial information. The proposed TransMIL can effectively deal with unbalanced/balanced and binary/multiple classification with great visualization and interpretability. We conducted various experiments for three different computational pathology problems and achieved better performance and faster convergence compared with state-of-the-art methods. The test AUC for the binary tumor classification can be up to 93.09% over CAMELYON16 dataset. And the AUC over the cancer subtypes classification can be up to 96.03% and 98.82% over TCGA-NSCLC dataset and TCGA-RCC dataset, respectively. Implementation is available at: https://github.com/szc19990412/TransMIL.

Xingchen Song, Di Wu, Dinghao Zhou et al.

Most existing text-to-speech (TTS) systems either synthesize speech sentence by sentence and stitch the results together, or drive synthesis from plain-text dialogues alone. Both approaches leave models with little understanding of global context or paralinguistic cues, making it hard to capture real-world phenomena such as multi-speaker interactions (interruptions, overlapping speech), evolving emotional arcs, and varied acoustic environments. We introduce the Borderless Long Speech Synthesis framework for agent-centric, borderless long audio synthesis. Rather than targeting a single narrow task, the system is designed as a unified capability set spanning VoiceDesigner, multi-speaker synthesis, Instruct TTS, and long-form text synthesis. On the data side, we propose a "Labeling over filtering/cleaning" strategy and design a top-down, multi-level annotation schema we call Global-Sentence-Token. On the model side, we adopt a backbone with a continuous tokenizer and add Chain-of-Thought (CoT) reasoning together with Dimension Dropout, both of which markedly improve instruction following under complex conditions. We further show that the system is Native Agentic by design: the hierarchical annotation doubles as a Structured Semantic Interface between the LLM Agent and the synthesis engine, creating a layered control protocol stack that spans from scene semantics down to phonetic detail. Text thereby becomes an information-complete, wide-band control channel, enabling a front-end LLM to convert inputs of any modality into structured generation commands, extending the paradigm from Text2Speech to borderless long speech synthesis.

Xiang Hu, Hongyu Fu, Jinge Wang et al.

Scientific innovation is pivotal for humanity, and harnessing large language models (LLMs) to generate research ideas could transform discovery. However, existing LLMs often produce simplistic and repetitive suggestions due to their limited ability in acquiring external knowledge for innovation. To address this problem, we introduce an enhanced planning and search methodology designed to boost the creative potential of LLM-based systems. Our approach involves an iterative process to purposely plan the retrieval of external knowledge, progressively enriching the idea generation with broader and deeper insights. Validation through automated and human assessments indicates that our framework substantially elevates the quality of generated ideas, particularly in novelty and diversity. The number of unique novel ideas produced by our framework is 3.4 times higher than without it. Moreover, our method outperforms the current state-of-the-art, generating at least 2.5 times more top-rated ideas based on 170 seed papers in a Swiss Tournament evaluation.

Yifeng Wang, Yi Zhao

As attitude and motion sensing components, inertial sensors are widely used in various portable devices. But the severe errors of inertial sensors restrain their function, especially the trajectory recovery and semantic recognition. As a mainstream signal processing method, wavelet is hailed as the mathematical microscope of signal due to the plentiful and diverse wavelet basis functions. However, complicated noise types and application scenarios of inertial sensors make selecting wavelet basis perplexing. To this end, we propose a wavelet dynamic selection network (WDSNet), which intelligently selects the appropriate wavelet basis for variable inertial signals. In addition, existing deep learning architectures excel at extracting features from input data but neglect to learn the characteristics of target categories, which is essential to enhance the category awareness capability, thereby improving the selection of wavelet basis. Therefore, we propose a category representation mechanism (CRM), which enables the network to extract and represent category features without increasing trainable parameters. Furthermore, CRM transforms the common fully connected network into category representations, which provide closer supervision to the feature extractor than the far and trivial one-hot classification labels. We call this process of imposing interpretability on a network and using it to supervise the feature extractor the feature supervision mechanism, and its effectiveness is demonstrated experimentally and theoretically in this paper. The enhanced inertial signal can perform impracticable tasks with regard to the original signal, such as trajectory reconstruction. Both quantitative and visual results show that WDSNet outperforms the existing methods. Remarkably, WDSNet, as a weakly-supervised method, achieves the state-of-the-art performance of all the compared fully-supervised methods.

Yifeng Wang, Yi Zhao

Low-cost accelerometers play a crucial role in modern society due to their advantages of small size, ease of integration, wearability, and mass production, making them widely applicable in automotive systems, aerospace, and wearable technology. However, this widely used sensor suffers from severe accuracy and range limitations. To this end, we propose a honed-energy regularized and optimal supervised GAN (HEROS-GAN), which transforms low-cost sensor signals into high-cost equivalents, thereby overcoming the precision and range limitations of low-cost accelerometers. Due to the lack of frame-level paired low-cost and high-cost signals for training, we propose an Optimal Transport Supervision (OTS), which leverages optimal transport theory to explore potential consistency between unpaired data, thereby maximizing supervisory information. Moreover, we propose a Modulated Laplace Energy (MLE), which injects appropriate energy into the generator to encourage it to break range limitations, enhance local changes, and enrich signal details. Given the absence of a dedicated dataset, we specifically establish a Low-cost Accelerometer Signal Enhancement Dataset (LASED) containing tens of thousands of samples, which is the first dataset serving to improve the accuracy and range of accelerometers and is released in Github. Experimental results demonstrate that a GAN combined with either OTS or MLE alone can surpass the previous signal enhancement SOTA methods by an order of magnitude. Integrating both OTS and MLE, the HEROS-GAN achieves remarkable results, which doubles the accelerometer range while reducing signal noise by two orders of magnitude, establishing a benchmark in the accelerometer signal processing.

Qingchuan Ma, Shiao Wang, Tong Zheng et al.

This study addresses the critical challenge of predicting the Q-distribution in long-term stable nuclear fusion task, a key component for advancing clean energy solutions. We introduce an innovative deep learning framework that employs Modern Hopfield Networks to incorporate associative memory from historical shots. Utilizing a newly compiled dataset, we demonstrate the effectiveness of our approach in enhancing Q-distribution prediction. The proposed method represents a significant advancement by leveraging historical memory information for the first time in this context, showcasing improved prediction accuracy and contributing to the optimization of nuclear fusion research.

Ye Zhang, Ziyue Wang, Yifeng Wang et al.

Semi-supervised segmentation methods have demonstrated promising results in natural scenarios, providing a solution to reduce dependency on manual annotation. However, these methods face significant challenges when directly applied to pathological images due to the subtle color differences between nuclei and tissues, as well as the significant morphological variations among nuclei. Consequently, the generated pseudo-labels often contain much noise, especially at the nuclei boundaries. To address the above problem, this paper proposes a boundary-aware contrastive learning network to denoise the boundary noise in a semi-supervised nuclei segmentation task. The model has two key designs: a low-resolution denoising (LRD) module and a cross-RoI contrastive learning (CRC) module. The LRD improves the smoothness of the nuclei boundary by pseudo-labels denoising, and the CRC enhances the discrimination between foreground and background by boundary feature contrastive learning. We conduct extensive experiments to demonstrate the superiority of our proposed method over existing semi-supervised instance segmentation methods.

Ye Zhang, Zijie Fang, Yifeng Wang et al.

Nuclei segmentation and classification provide an essential basis for tumor immune microenvironment analysis. The previous nuclei segmentation and classification models require splitting large images into smaller patches for training, leading to two significant issues. First, nuclei at the borders of adjacent patches often misalign during inference. Second, this patch-based approach significantly increases the model's training and inference time. Recently, Mamba has garnered attention for its ability to model large-scale images with linear time complexity and low memory consumption. It offers a promising solution for training nuclei segmentation and classification models on full-sized images. However, the Mamba orientation-based scanning method lacks account for category-specific features, resulting in sub-optimal performance in scenarios with imbalanced class distributions. To address these challenges, this paper introduces a novel scanning strategy based on category probability sorting, which independently ranks and scans features for each category according to confidence from high to low. This approach enhances the feature representation of uncertain samples and mitigates the issues caused by imbalanced distributions. Extensive experiments conducted on four public datasets demonstrate that our method outperforms state-of-the-art approaches, delivering superior performance in nuclei segmentation and classification tasks.

Ke Li, Di Wang, Xiaowei Wang et al.

Drone-view geo-localization (DVGL) aims to match images of the same geographic location captured from drone and satellite perspectives. Despite recent advances, DVGL remains challenging due to significant appearance changes and spatial distortions caused by viewpoint variations. Existing methods typically assume that drone and satellite images can be directly aligned in a shared feature space via contrastive learning. Nonetheless, this assumption overlooks the inherent conflicts induced by viewpoint discrepancies, resulting in extracted features containing inconsistent information that hinders precise localization. In this study, we take a manifold learning perspective and model $\textit{the feature space of cross-view images as a composite manifold jointly governed by content and viewpoint}$. Building upon this insight, we propose $\textbf{CVD}$, a new DVGL framework that explicitly disentangles $\textit{content}$ and $\textit{viewpoint}$ factors. To promote effective disentanglement, we introduce two constraints: $\textit{(i)}$ an intra-view independence constraint that encourages statistical independence between the two factors by minimizing their mutual information; and $\textit{(ii)}$ an inter-view reconstruction constraint that reconstructs each view by cross-combining $\textit{content}$ and $\textit{viewpoint}$ from paired images, ensuring factor-specific semantics are preserved. As a plug-and-play module, CVD integrates seamlessly into existing DVGL pipelines and reduces inference latency. Extensive experiments on University-1652 and SUES-200 show that CVD exhibits strong robustness and generalization across various scenarios, viewpoints and altitudes, with further evaluations on CVUSA and CVACT confirming consistent improvements.

Shiao Wang, Yifeng Wang, Qingchuan Ma et al.

Q-distribution prediction is a crucial research direction in controlled nuclear fusion, with deep learning emerging as a key approach to solving prediction challenges. In this paper, we leverage deep learning techniques to tackle the complexities of Q-distribution prediction. Specifically, we explore multimodal fusion methods in computer vision, integrating 2D line image data with the original 1D data to form a bimodal input. Additionally, we employ the Transformer's attention mechanism for feature extraction and the interactive fusion of bimodal information. Extensive experiments validate the effectiveness of our approach, significantly reducing prediction errors in Q-distribution.

Yifeng Wang, Ke Chen, Haohan Wang · cmu

Automated diagnosis of Alzheimer Disease(AD) from brain imaging, such as magnetic resonance imaging (MRI), has become increasingly important and has attracted the community to contribute many deep learning methods. However, many of these methods are facing a trade-off that 3D models tend to be complicated while 2D models cannot capture the full 3D intricacies from the data. In this paper, we introduce a new model structure for diagnosing AD, and it can complete with performances of 3D models while essentially is a 2D method (thus computationally efficient). While the core idea lies in new perspective of cutting the 3D images into multiple 2D slices from three dimensions, we introduce multiple components that can further benefit the model in this new perspective, including adaptively selecting the number of sclices in each dimension, and the new attention mechanism. In addition, we also introduce a morphology augmentation, which also barely introduces new computational loads, but can help improve the diagnosis performances due to its alignment to the pathology of AD. We name our method ADAPT, which stands for Alzheimer Diagnosis through Adaptive Profiling Transformers. We test our model from a practical perspective (the testing domains do not appear in the training one): the diagnosis accuracy favors our ADAPT, while ADAPT uses less parameters than most 3D models use.

Kuang Yuan, Yifeng Wang, Xiyuxing Zhang et al. · cmu

Imagine placing your smartphone on a table in a noisy restaurant and clearly capturing the voices of friends seated around you, or recording a lecturer's voice with clarity in a reverberant auditorium. We introduce SonicSieve, the first intelligent directional speech extraction system for smartphones using a bio-inspired acoustic microstructure. Our passive design embeds directional cues onto incoming speech without any additional electronics. It attaches to the in-line mic of low-cost wired earphones which can be attached to smartphones. We present an end-to-end neural network that processes the raw audio mixtures in real-time on mobile devices. Our results show that SonicSieve achieves a signal quality improvement of 5.0 dB when focusing on a 30° angular region. Additionally, the performance of our system based on only two microphones exceeds that of conventional 5-microphone arrays.

Ke Chen, Yifeng Wang, Hassan Almosapeeh et al.

Most prompt-optimization methods refine a single static template, making them ineffective in complex and dynamic user scenarios. Existing query-dependent approaches rely on unstable textual feedback or black-box reward models, providing weak and uninterpretable optimization signals. More fundamentally, prompt quality itself lacks a unified, systematic definition, resulting in fragmented and unreliable evaluation signals. Our approach first establishes a performance-oriented, systematic, and comprehensive prompt evaluation framework. Furthermore, we develop and finetune an execution-free evaluator that predicts multi-dimensional quality scores directly from text. The evaluator then instructs a metric-aware optimizer that diagnoses failure modes and rewrites prompts in an interpretable, query-dependent manner. Our evaluator achieves the strongest accuracy in predicting prompt performance, and the evaluation-instructed optimization consistently surpass both static-template and query-dependent baselines across eight datasets and on three backbone models. Overall, we propose a unified, metric-grounded perspective on prompt quality, and demonstrated that our evaluation-instructed optimization pipeline delivers stable, interpretable, and model-agnostic improvements across diverse tasks.

Sirui Chen, Yuhong Feng, Yifeng Wang et al.

Accurate animal counting is essential for smart farming but remains difficult in crowded scenes due to occlusions and limited camera views. To address this, we propose a tri-plane-based multi-view chicken counting model (TP-MVCC), which leverages geometric projection and tri-plane fusion to integrate features from multiple cameras onto a unified ground plane. The framework extracts single-view features, aligns them via spatial transformation, and decodes a scene-level density map for precise chicken counting. In addition, we construct the first multi-view dataset of silkie chickens under real farming conditions. Experiments show that TP-MVCC significantly outperforms single-view and conventional fusion comparisons, achieving 95.1\% accuracy and strong robustness in dense, occluded scenarios, demonstrating its practical potential for intelligent agriculture.

Xiaowei Wang, Di Wang, Ke Li et al.

Cross-view geo-localization (CVGL) aims to match images of the same location captured from drastically different viewpoints. Despite recent progress, existing methods still face two key challenges: (1) achieving robustness under severe appearance variations induced by diverse UAV orientations and fields of view, which hinders cross-domain generalization, and (2) establishing reliable correspondences that capture both global scene-level semantics and fine-grained local details. In this paper, we propose EGS, a novel CVGL framework designed to enhance cross-domain generalization. Specifically, we introduce an E(2)-Steerable CNN encoder to extract stable and reliable features under rotation and viewpoint shifts. Furthermore, we construct a graph with a virtual super-node that connects to all local nodes, enabling global semantics to be aggregated and redistributed to local regions, thereby enforcing global-local consistency. Extensive experiments on the University-1652 and SUES-200 benchmarks demonstrate that EGS consistently achieves substantial performance gains and establishes a new state of the art in cross-domain CVGL.

Zui Chen, Han Li, Xinhao Zhang et al.

We present RubikSQL, a novel NL2SQL system designed to address key challenges in real-world enterprise-level NL2SQL, such as implicit intents and domain-specific terminology. RubikSQL frames NL2SQL as a lifelong learning task, demanding both Knowledge Base (KB) maintenance and SQL generation. RubikSQL systematically builds and refines its KB through techniques including database profiling, structured information extraction, agentic rule mining, and Chain-of-Thought (CoT)-enhanced SQL profiling. RubikSQL then employs a multi-agent workflow to leverage this curated KB, generating accurate SQLs. RubikSQL achieves SOTA performance on both the KaggleDBQA and BIRD Mini-Dev datasets. Finally, we release the RubikBench benchmark, a new benchmark specifically designed to capture vital traits of industrial NL2SQL scenarios, providing a valuable resource for future research.

Yilun Wang, Zhiqiang Li, Yifeng Wang et al.

Feature selection is among the most important components because it not only helps enhance the classification accuracy, but also or even more important provides potential biomarker discovery. However, traditional multivariate methods is likely to obtain unstable and unreliable results in case of an extremely high dimensional feature space and very limited training samples, where the features are often correlated or redundant. In order to improve the stability, generalization and interpretations of the discovered potential biomarker and enhance the robustness of the resultant classifier, the redundant but informative features need to be also selected. Therefore we introduced a novel feature selection method which combines a recent implementation of the stability selection approach and the elastic net approach. The advantage in terms of better control of false discoveries and missed discoveries of our approach, and the resulted better interpretability of the obtained potential biomarker is verified in both synthetic and real fMRI experiments. In addition, we are among the first to demonstrate the robustness of feature selection benefiting from the incorporation of stability selection and also among the first to demonstrate the possible unrobustness of the classical univariate two-sample t-test method. Specifically, we show the robustness of our feature selection results in existence of noisy (wrong) training labels, as well as the robustness of the resulted classifier based on our feature selection results in the existence of data variation, demonstrated by a multi-center attention-deficit/hyperactivity disorder (ADHD) fMRI data.