Dayu Tan

Dayu Tan, Ziwei Zhang, Yansan Su et al.

Numerous CNN-Transformer hybrid models rely on high-complexity global attention mechanisms to capture long-range dependencies, which introduces non-linear computational complexity and leads to significant resource consumption. Although knowledge distillation and sparse attention mechanisms can improve efficiency, they often fall short of delivering the high segmentation accuracy necessary for complex tasks. Balancing model performance with computational efficiency remains a critical challenge. In this work, we propose a novel 3D multi-modal image segmentation framework, termed MSD-KMamba, which integrates bidirectional spatial perception with multi-scale self-distillation. The bidirectional spatial aware branch effectively captures long-range spatial context dependencies across brain regions, while also incorporating a powerful nonlinear feature extraction mechanism that further enhances the model's ability to learn complex and heterogeneous patterns. In addition, the proposed multi-scale self-distilled fusion strategy strengthens hierarchical feature representations and improves the transfer of semantic information at different resolution levels. By jointly leveraging the bidirectional spatial perception branch and the multi-scale self-distilled fusion strategy, our framework effectively mitigates the bottleneck of quadratic computational complexity in volumetric segmentation, while simultaneously addressing the limitation of insufficient global perception. Extensive experiments on multiple standard benchmark datasets demonstrate that MSD-KMamba consistently outperforms state-of-the-art methods in segmentation accuracy, robustness, and generalization, while maintaining high computational efficiency and favorable scalability. The source code of MSD-KMamba is publicly available at https://github.com/daimao-zhang/MSD-KMamba.

Dayu Tan, Jing Chen, Xiaoping Zhou et al.

Infectious diseases continue to pose a serious threat to public health, underscoring the urgent need for effective computational approaches to screen novel anti-infective agents. Oligopeptides have emerged as promising candidates in antimicrobial research due to their structural simplicity, high bioavailability, and low susceptibility to resistance. Despite their potential, computational models specifically designed to predict associations between oligopeptides and infectious diseases remain scarce. This study introduces a prompt-guided graph-based contrastive learning framework (PGCLODA) to uncover potential associations. A tripartite graph is constructed with oligopeptides, microbes, and diseases as nodes, incorporating both structural and semantic information. To preserve critical regions during contrastive learning, a prompt-guided graph augmentation strategy is employed to generate meaningful paired views. A dual encoder architecture, integrating Graph Convolutional Network (GCN) and Transformer, is used to jointly capture local and global features. The fused embeddings are subsequently input into a multilayer perceptron (MLP) classifier for final prediction. Experimental results on a benchmark dataset indicate that PGCLODA consistently outperforms state-of-the-art models in AUROC, AUPRC, and accuracy. Ablation and hyperparameter studies confirm the contribution of each module. Case studies further validate the generalization ability of PGCLODA and its potential to uncover novel, biologically relevant associations. These findings offer valuable insights for mechanism-driven discovery and oligopeptide-based drug development. The source code of PGCLODA is available online at https://github.com/jjnlcode/PGCLODA.

Dayu Tan, Zhenpeng Xu, Yansen Su et al.

Both local details and global context are crucial in medical image segmentation, and effectively integrating them is essential for achieving high accuracy. However, existing mainstream methods based on CNN-Transformer hybrid architectures typically employ simple feature fusion techniques such as serial stacking, endpoint concatenation, or pointwise addition, which struggle to address the inconsistencies between features and are prone to information conflict and loss. To address the aforementioned challenges, we innovatively propose HiPerformer. The encoder of HiPerformer employs a novel modular hierarchical architecture that dynamically fuses multi-source features in parallel, enabling layer-wise deep integration of heterogeneous information. The modular hierarchical design not only retains the independent modeling capability of each branch in the encoder, but also ensures sufficient information transfer between layers, effectively avoiding the degradation of features and information loss that come with traditional stacking methods. Furthermore, we design a Local-Global Feature Fusion (LGFF) module to achieve precise and efficient integration of local details and global semantic information, effectively alleviating the feature inconsistency problem and resulting in a more comprehensive feature representation. To further enhance multi-scale feature representation capabilities and suppress noise interference, we also propose a Progressive Pyramid Aggregation (PPA) module to replace traditional skip connections. Experiments on eleven public datasets demonstrate that the proposed method outperforms existing segmentation techniques, demonstrating higher segmentation accuracy and robustness. The code is available at https://github.com/xzphappy/HiPerformer.

Rui Hao, Dayu Tan, Qiankun Li et al.

Accurate segmentation of organs-at-risk (OARs) is vital for safe and precise radiotherapy and surgery. Most existing studies segment only a limited set of organs or regions, lacking a systematic treatment of OARs segmentation. We present a Multi-scale Cascaded Fusion Network (MCFNet) that aggregates features across multiple scales and resolutions. MCFNet consists of a Sharp Extraction Backbone for the downsampling path and a Flexible Connection Backbone for skip-connection fusion, strengthening representation learning in both stages. This design improves boundary localization and preserves fine structures while maintaining computational efficiency, enabling reliable performance even on low-resolution inputs. Experiments on an NVIDIA A6000 GPU using 36,131 image-mask pairs from 671 patients across 10 datasets show consistent robustness and strong cross-dataset generalization. An adaptive loss-aggregation strategy further stabilizes optimization and yields additional gains in accuracy and training efficiency. Through extensive validation, MCFNet outperforms existing methods, excelling in organ segmentation and providing reliable image-guided support for computer-aided diagnosis. Our solution aims to improve the precision and safety of radiotherapy and surgery while supporting personalized treatment, advancing modern medical technology. The code has been made available on GitHub: https://github.com/Henry991115/MCFNet.

Dayu Tan, Cheng Kong, Yansen Su et al.

In the field of multi-organ medical image segmentation, recent methods frequently employ Transformers to capture long-range dependencies from image features. However, these methods overlook the high computational cost of Transformers and their deficiencies in extracting local detailed information. To address high computational costs and inadequate local detail information, we reassess the design of feature extraction modules and propose a new deep-learning network called LamFormer for fine-grained segmentation tasks across multiple organs. LamFormer is a novel U-shaped network that employs Linear Attention Mamba (LAM) in an enhanced pyramid encoder to capture multi-scale long-range dependencies. We construct the Parallel Hierarchical Feature Aggregation (PHFA) module to aggregate features from different layers of the encoder, narrowing the semantic gap among features while filtering information. Finally, we design the Reduced Transformer (RT), which utilizes a distinct computational approach to globally model up-sampled features. RRT enhances the extraction of detailed local information and improves the network's capability to capture long-range dependencies. LamFormer outperforms existing segmentation methods on seven complex and diverse datasets, demonstrating exceptional performance. Moreover, the proposed network achieves a balance between model performance and model complexity.

Dayu Tan, Zheng Huang, Xin Peng et al.

Cluster assignment of large and complex images is a crucial but challenging task in pattern recognition and computer vision. In this study, we explore the possibility of employing fuzzy clustering in a deep neural network framework. Thus, we present a novel evolutionary unsupervised learning representation model with iterative optimization. It implements the deep adaptive fuzzy clustering (DAFC) strategy that learns a convolutional neural network classifier from given only unlabeled data samples. DAFC consists of a deep feature quality-verifying model and a fuzzy clustering model, where deep feature representation learning loss function and embedded fuzzy clustering with the weighted adaptive entropy is implemented. We joint fuzzy clustering to the deep reconstruction model, in which fuzzy membership is utilized to represent a clear structure of deep cluster assignments and jointly optimize for the deep representation learning and clustering. Also, the joint model evaluates current clustering performance by inspecting whether the re-sampled data from estimated bottleneck space have consistent clustering properties to progressively improve the deep clustering model. Comprehensive experiments on a variety of datasets show that the proposed method obtains a substantially better performance for both reconstruction and clustering quality when compared to the other state-of-the-art deep clustering methods, as demonstrated with the in-depth analysis in the extensive experiments.