Mohammadreza Bakhtyari

Zeinab Sherkatghanad, Moloud Abdar, Mohammadreza Bakhtyari et al.

Test-time augmentation (TTA) is a well-known technique employed during the testing phase of computer vision tasks. It involves aggregating multiple augmented versions of input data. Combining predictions using a simple average formulation is a common and straightforward approach after performing TTA. This paper introduces a novel framework for optimizing TTA, called BayTTA (Bayesian-based TTA), which is based on Bayesian Model Averaging (BMA). First, we generate a prediction list associated with different variations of the input data created through TTA. Then, we use BMA to combine predictions weighted by the respective posterior probabilities. Such an approach allows one to take into account model uncertainty, and thus to enhance the predictive performance of the related machine learning or deep learning model. We evaluate the performance of BayTTA on various public data, including three medical image datasets comprising skin cancer, breast cancer, and chest X-ray images and two well-known gene editing datasets, CRISPOR and GUIDE-seq. Our experimental results indicate that BayTTA can be effectively integrated into state-of-the-art deep learning models used in medical image analysis as well as into some popular pre-trained CNN models such as VGG-16, MobileNetV2, DenseNet201, ResNet152V2, and InceptionRes-NetV2, leading to the enhancement in their accuracy and robustness performance. The source code of the proposed BayTTA method is freely available at: \underline {https://github.com/Z-Sherkat/BayTTA}.

Ousmane Assani Amate, Mohammadreza Bakhtyari, Émilie Roy et al.

Dimensionality reduction is a critical preprocessing step for clustering high-dimensional data, yet comprehensive evaluation of its impact across diverse methods and data types remains limited. In this study, we systematically assess the influence of five dimensionality reduction techniques - Principal Component Analysis (PCA), Kernel Principal Component Analysis (Kernel PCA), Variational Autoencoder (VAE), Isometric Mapping (Isomap), and Multidimensional Scaling (MDS) - on the performance of four popular clustering algorithms - k-means, Agglomerative Hierarchical Clustering (AHC), Gaussian Mixture Models (GMM), and Ordering Points to Identify the Clustering Structure (OPTICS). We evaluate clustering quality using the Adjusted Rand Index (ARI), comparing results without and with dimensionality reduction at different reduction levels recommended in the literature (i.e., k-1, where k is the number of clusters, and 25% and 50% of the original number of dimensions). Our findings underscore the importance of a careful selection of the dimensionality reduction technique and the dimensionality reduction level that should be tailored to intrinsic data geometry and clustering algorithms under consideration.

Mohammadreza Bakhtyari, Bogdan Mazoure, Renato Cordeiro de Amorim et al.

We introduce ClustRecNet - a novel deep learning (DL)-based recommendation framework for determining the most suitable clustering algorithms for a given dataset, addressing the long-standing challenge of clustering algorithm selection in unsupervised learning. To enable supervised learning in this context, we construct a comprehensive data repository comprising 34,000 synthetic datasets with diverse structural properties. Each of them was processed using 10 popular clustering algorithms. The resulting clusterings were assessed via the Adjusted Rand Index (ARI) to establish ground truth labels, used for training and evaluation of our DL model. The proposed network architecture integrates convolutional, residual, and attention mechanisms to capture both local and global structural patterns from the input data. This design supports end-to-end training to learn compact representations of datasets and enables direct recommendation of the most suitable clustering algorithm, reducing reliance on handcrafted meta-features and traditional Cluster Validity Indices (CVIs). Comprehensive experiments across synthetic and real-world benchmarks demonstrate that our DL model consistently outperforms conventional CVIs (e.g. Silhouette, Calinski-Harabasz, Davies-Bouldin, and Dunn) as well as state-of-the-art AutoML clustering recommendation approaches (e.g. ML2DAC, AutoCluster, and AutoML4Clust). Notably, the proposed model achieves a 0.497 ARI improvement over the Calinski-Harabasz index on synthetic data and a 15.3% ARI gain over the best-performing AutoML approach on real-world data.