Anqi Dong

Anqi Dong, Tryphon T. Georgiou, Allen Tannenbaum

Biological networks often encapsulate promotion/inhibition as signed edge-weights of a graph. Nodes may correspond to genes assigned expression levels (mass) of respective proteins. The promotion/inhibition nature of co-expression between nodes is encoded in the sign of the corresponding entry of a sign-indefinite adjacency matrix, though the strength of such co-expression (i.e., the precise value of edge weights) cannot typically be directly measured. Herein we address the inverse problem to determine network edge-weights based on a sign-indefinite adjacency and expression levels at the nodes. While our motivation originates in gene networks, the framework applies to networks where promotion/inhibition dictates a stationary mass distribution at the nodes. In order to identify suitable edge-weights we adopt a framework of ``negative probabilities,'' advocated by P.\ Dirac and R.\ Feynman, and we set up a likelihood formalism to obtain values for the sought edge-weights. The proposed optimization problem can be solved via a generalization of the well-known Sinkhorn algorithm; in our setting the Sinkhorn-type ``diagonal scalings'' are multiplicative or inverse-multiplicative, depending on the sign of the respective entries in the adjacency matrix, with value computed as the positive root of a quadratic polynomial.

Minchao Jiang, Shunyu Jia, Jiaming Gu et al.

3D Gaussian Splatting (3DGS) has become horsepower in high-quality, real-time rendering for novel view synthesis of 3D scenes. However, existing methods focus primarily on geometric and appearance modeling, lacking deeper scene understanding while also incurring high training costs that complicate the originally streamlined differentiable rendering pipeline. To this end, we propose VoteSplat, a novel 3D scene understanding framework that integrates Hough voting with 3DGS. Specifically, Segment Anything Model (SAM) is utilized for instance segmentation, extracting objects, and generating 2D vote maps. We then embed spatial offset vectors into Gaussian primitives. These offsets construct 3D spatial votes by associating them with 2D image votes, while depth distortion constraints refine localization along the depth axis. For open-vocabulary object localization, VoteSplat maps 2D image semantics to 3D point clouds via voting points, reducing training costs associated with high-dimensional CLIP features while preserving semantic unambiguity. Extensive experiments demonstrate effectiveness of VoteSplat in open-vocabulary 3D instance localization, 3D point cloud understanding, click-based 3D object localization, hierarchical segmentation, and ablation studies. Our code is available at https://sy-ja.github.io/votesplat/

Anqi Dong, Yongxin Chen, Karl H. Johansson et al.

Steering large-scale swarms in only a few control updates is challenging because real systems operate in sampled-data form: control inputs are updated intermittently and applied over finite intervals. In this regime, the natural object is not an instantaneous velocity field, but a finite-window control quantity that captures the system response over each sampling interval. Inspired by MeanFlow, we introduce a control-space learning framework for swarm steering under linear time-invariant dynamics. The learned object is the coefficient that parameterizes the finite-horizon minimum-energy control over each interval. We show that this coefficient admits both an integral representation and a local differential identity along bridge trajectories, which leads to a simple stop-gradient training objective. At implementation time, the learned coefficient is used directly in sampled-data updates, so the prescribed dynamics and actuation map are respected by construction. The resulting framework provides a scalable approach to few-step swarm steering that is consistent with the sampled-data structure of real control systems.

Angxiao Yue, Anqi Dong, Hongteng Xu

As a powerful technique in generative modeling, Flow Matching (FM) aims to learn velocity fields from noise to data, which is often explained and implemented as solving Optimal Transport (OT) problems. In this study, we bridge FM and the recent theory of Optimal Acceleration Transport (OAT), developing an improved FM method called OAT-FM and exploring its benefits in both theory and practice. In particular, we demonstrate that the straightening objective hidden in existing OT-based FM methods is mathematically equivalent to minimizing the physical action associated with acceleration defined by OAT. Accordingly, instead of enforcing constant velocity, OAT-FM optimizes the acceleration transport in the product space of sample and velocity, whose objective corresponds to a necessary and sufficient condition of flow straightness. An efficient algorithm is designed to achieve OAT-FM with low complexity. OAT-FM motivates a new two-phase FM paradigm: Given a generative model trained by an arbitrary FM method, whose velocity information has been relatively reliable, we can fine-tune and improve it via OAT-FM. This paradigm eliminates the risk of data distribution drift and the need to generate a large number of noise data pairs, which consistently improves model performance in various generative tasks. Code is available at: https://github.com/AngxiaoYue/OAT-FM

Nuoye Xiong, Anqi Dong, Ning Wang et al.

Recent advances in deep learning have led to increasingly complex models with deeper layers and more parameters, reducing interpretability and making their decisions harder to understand. While many methods explain black-box reasoning, most lack effective interventions or only operate at sample-level without modifying the model itself. To address this, we propose the Concept Bottleneck Model for Enhancing Human-Neural Network Mutual Understanding (CBM-HNMU). CBM-HNMU leverages the Concept Bottleneck Model (CBM) as an interpretable framework to approximate black-box reasoning and communicate conceptual understanding. Detrimental concepts are automatically identified and refined (removed/replaced) based on global gradient contributions. The modified CBM then distills corrected knowledge back into the black-box model, enhancing both interpretability and accuracy. We evaluate CBM-HNMU on various CNN and transformer-based models across Flower-102, CIFAR-10, CIFAR-100, FGVC-Aircraft, and CUB-200, achieving a maximum accuracy improvement of 2.64% and a maximum increase in average accuracy across 1.03%. Source code is available at: https://github.com/XiGuaBo/CBM-HNMU.

Anqi Dong, Anzhi Sheng, Xin Mao et al.

Random walks are fundamental tools for analyzing complex networked systems, including social networks, biological systems, and communication infrastructures. While classical random walks focus on pairwise interactions, many real-world systems exhibit higher-order interactions naturally modeled by hypergraphs. Existing random walk models on hypergraphs often focus on undirected structures or do not incorporate entropy-based inference, limiting their ability to capture directional flows, uncertainty, or information diffusion in complex systems. In this article, we develop a maximum-entropy random walk framework on directed hypergraphs with two interaction mechanisms: broadcasting where a pivot node activates multiple receiver nodes and merging where multiple pivot nodes jointly influence a receiver node. We infer a transition kernel via a Kullback--Leibler divergence projection onto constraints enforcing stochasticity and stationarity. The resulting optimality conditions yield a multiplicative scaling form, implemented using Sinkhorn--Schrödinger-type iterations with tensor contractions. We further analyze ergodicity, including projected linear kernels for broadcasting and tensor spectral criteria for polynomial dynamics in merging. The effectiveness of our framework is demonstrated with both synthetic and real-world examples.

Kaito Ito, Anqi Dong

Optimal transport with quadratic cost provides a geometric framework for steering an ensemble, modeled by a probability law, with minimal effort. Yet ambient-space formulations become unwieldy in high dimensions, and sensing or actuation in practice often reveals only linear views of the state -- camera silhouettes, LiDAR beams, tomographic slices. We develop a sliced feedback controller for distribution steering: the evolving law is projected onto one-dimensional directions on the sphere, the optimal one-dimensional velocity is synthesized in each projection, and these velocities are averaged to produce a feedback control in the ambient space. The construction reduces to the Benamou--Brenier problem in one dimension. In addition, it is invariant under orthogonal transforms, nonexpansive under projections, and well posed on $\mathcal{P}_2(\mathbb{R}^n)$. Computation proceeds by sampling directions on the sphere and solving independent one-dimensional subproblems, yielding a scalable method aligned with partial observations. In the Gaussian setting, we show that the developed sliced controller steers the law to the prescribed target. Furthermore, we derive an identity relating the energy consumption incurred by the controller to the sliced Wasserstein distance.

Xin Qiao, Shijie Sun, Anqi Dong et al.

Imputing missing node features in graphs is challenging, particularly under high missing rates. Existing methods based on latent representations or global diffusion often fail to produce reliable estimates, and may propagate errors across the graph. We propose FSD-CAP, a two-stage framework designed to improve imputation quality under extreme sparsity. In the first stage, a graph-distance-guided subgraph expansion localizes the diffusion process. A fractional diffusion operator adjusts propagation sharpness based on local structure. In the second stage, imputed features are refined using class-aware propagation, which incorporates pseudo-labels and neighborhood entropy to promote consistency. We evaluated FSD-CAP on multiple datasets. With $99.5\%$ of features missing across five benchmark datasets, FSD-CAP achieves average accuracies of $80.06\%$ (structural) and $81.01\%$ (uniform) in node classification, close to the $81.31\%$ achieved by a standard GCN with full features. For link prediction under the same setting, it reaches AUC scores of $91.65\%$ (structural) and $92.41\%$ (uniform), compared to $95.06\%$ for the fully observed case. Furthermore, FSD-CAP demonstrates superior performance on both large-scale and heterophily datasets when compared to other models.

Zifan Wang, Anqi Dong, Mahmoud Selim et al.

Data today is decentralized, generated and stored across devices and institutions where privacy, ownership, and regulation prevent centralization. This motivates the need to train generative models directly from distributed data locally without central aggregation. In this paper, we introduce Federated Flow Matching (FFM), a framework for training flow matching models under privacy constraints. Specifically, we first examine FFM-vanilla, where each client trains locally with independent source and target couplings, preserving privacy but yielding curved flows that slow inference. We then develop FFM-LOT, which employs local optimal transport couplings to improve straightness within each client but lacks global consistency under heterogeneous data. Finally, we propose FFM-GOT, a federated strategy based on the semi-dual formulation of optimal transport, where a shared global potential function coordinates couplings across clients. Experiments on synthetic and image datasets show that FFM enables privacy-preserving training while enhancing both the flow straightness and sample quality in federated settings, with performance comparable to the centralized baseline.