Zheng Cheng

Xiang An, Yin Xie, Feilong Tang et al.

We introduce LLaVA-OneVision-2 (LLaVA-OV-2), the most capable vision-language model in the LLaVA-OneVision series to date, achieving superior performance across a broad range of multimodal benchmarks. The model builds on a native OneVision-Encoder and incorporates Windowed Attention for efficient local computation while maintaining native resolution. Its key advance is codec-stream tokenization: it treats compressed video as a continuous bit-cost stream, where bit-cost dynamics determine adaptive temporal groups, and motion-residual cues select salient spatial evidence into compact visual canvases. This allocation concentrates a limited token budget on event-bearing content, enabling more stable long-video token compression than fixed groups of pictures. A shared 3D RoPE further places codec canvases, sampled frames, and images in a unified spatiotemporal coordinate system. Furthermore, we build the LLaVA-OV-2 data and training stack around large-scale open supervision: approximately 8M re-captioned video samples for pretraining, a 4M-sample spatial corpus for fine-tuning. We also introduce JumpScore, a temporal-localization benchmark targeting fine-grained grounding in high-frequency, densely repeated motion, a regime underrepresented by existing video evaluations. A standout capability of LLaVA-OV-2 is its unified perception across video understanding, temporal grounding, spatial grounding, and manipulation-trace reasoning. On JumpScore, LLaVA-OneVision-2-8B reaches 74.9 JumpScore mAP, surpassing Qwen3-VL-8B (30.1) by +44.8 points; under matched visual-token budgets on the same benchmark, codec-stream inputs improve temporal grounding over frame sampling by +9.7 points. Across standard benchmarks, LLaVA-OneVision-2-8B further outperforms Qwen3-VL-8B by +4.3 average points on video tasks, +5.3 on spatial tasks, and +15.6 average J&F on tracking tasks.

Yutang Ge, Guojiang Zhao, Sihang Li et al.

Designing proteins that satisfy natural language functional requirements is a central goal in protein engineering. A straightforward baseline is to fine-tune generic instruction-tuned LLMs as direct text-to-sequence generators, but this is data- and compute-hungry. With limited supervision, LLMs can produce coherent plans in text yet fail to reliably realize them as sequences. This plan-execute gap motivates ProtoCycle, an agentic framework for protein design that uses LLMs primarily to drive a multi-round, feedback-driven decision cycle. ProtoCycle couples an LLM planner with a lightweight tool environment designed to emulate the iterative workflow of human protein engineering and uses LLM-driven reflection on tool feedback to revise plans. Trained with supervised trajectories and online reinforcement learning, ProtoCycle achieves strong language alignment while maintaining competitive foldability, and ablations show that reflection substantially improves sequence quality.

Hengxing Cai, Xiaochen Cai, Junhan Chang et al.

Recent breakthroughs in Large Language Models (LLMs) have revolutionized scientific literature analysis. However, existing benchmarks fail to adequately evaluate the proficiency of LLMs in this domain, particularly in scenarios requiring higher-level abilities beyond mere memorization and the handling of multimodal data. In response to this gap, we introduce SciAssess, a benchmark specifically designed for the comprehensive evaluation of LLMs in scientific literature analysis. It aims to thoroughly assess the efficacy of LLMs by evaluating their capabilities in Memorization (L1), Comprehension (L2), and Analysis \& Reasoning (L3). It encompasses a variety of tasks drawn from diverse scientific fields, including biology, chemistry, material, and medicine. To ensure the reliability of SciAssess, rigorous quality control measures have been implemented, ensuring accuracy, anonymization, and compliance with copyright standards. SciAssess evaluates 11 LLMs, highlighting their strengths and areas for improvement. We hope this evaluation supports the ongoing development of LLM applications in scientific literature analysis. SciAssess and its resources are available at \url{https://github.com/sci-assess/SciAssess}.

Mingfeng Li, Zheng Cheng, Weijie Zheng et al.

Problems defined on binary decision spaces have been intensively studied in the theory of multi-objective evolutionary algorithms (MOEAs). In contrast, no mathematical runtime analyses exist so far for MOEAs dealing with decision variables that take a finite number $r > 2$ of values, despite the prevalence of such problems in practice. In this work, we begin to fill this research gap. We analyze how the classic SEMO algorithm with unit-strength local mutation computes the Pareto front of an $r$-valued counterpart of the classic \oneminmax benchmark. For the expected number of function evaluations until the Pareto front is covered by the population of this MOEA, we prove an upper bound of $O(n^2 r^2 \log n)$ and a near-tight lower bound of $Ω(n^2 r (r + \log n))$. We can close the small remaining gap between these two bounds by considering a variant of the algorithm that accepts only strictly better solutions; for this variant, we show an upper bound of $O(n^2 r (r + \log n))$, matching our lower bound (which also holds for this variant). Our results suggest that classic MOEAs encounter no significant additional difficulties when dealing with multi-valued decision variables. However, significantly more advanced tools may be required to obtain tight bounds for algorithms with more complex population dynamics.

Zheng Cheng, Guodong Fan, Jingchun Zhou et al.

Underwater images often suffer from various issues such as low brightness, color shift, blurred details, and noise due to light absorption and scattering caused by water and suspended particles. Previous underwater image enhancement (UIE) methods have primarily focused on spatial domain enhancement, neglecting the frequency domain information inherent in the images. However, the degradation factors of underwater images are closely intertwined in the spatial domain. Although certain methods focus on enhancing images in the frequency domain, they overlook the inherent relationship between the image degradation factors and the information present in the frequency domain. As a result, these methods frequently enhance certain attributes of the improved image while inadequately addressing or even exacerbating other attributes. Moreover, many existing methods heavily rely on prior knowledge to address color shift problems in underwater images, limiting their flexibility and robustness. In order to overcome these limitations, we propose the Embedding Frequency and Dual Color Encoder Network (FDCE-Net) in our paper. The FDCE-Net consists of two main structures: (1) Frequency Spatial Network (FS-Net) aims to achieve initial enhancement by utilizing our designed Frequency Spatial Residual Block (FSRB) to decouple image degradation factors in the frequency domain and enhance different attributes separately. (2) To tackle the color shift issue, we introduce the Dual-Color Encoder (DCE). The DCE establishes correlations between color and semantic representations through cross-attention and leverages multi-scale image features to guide the optimization of adaptive color query. The final enhanced images are generated by combining the outputs of FS-Net and DCE through a fusion network. These images exhibit rich details, clear textures, low noise and natural colors.

Xiang An, Yin Xie, Kaicheng Yang et al.

We present LLaVA-OneVision-1.5, a novel family of Large Multimodal Models (LMMs) that achieve state-of-the-art performance with significantly reduced computational and financial costs. Different from the existing works, LLaVA-OneVision-1.5 provides an open, efficient, and reproducible framework for building high-quality vision-language models entirely from scratch. The LLaVA-OneVision-1.5 release comprises three primary components: (1) Large-Scale Curated Datasets: We construct an 85M concept-balanced pretraining dataset LLaVA-OneVision-1.5-Mid-Traning and a meticulously curated 22M instruction dataset LLaVA-OneVision-1.5-Instruct. (2) Efficient Training Framework: We develop a complete end-to-end efficient training framework leveraging an offline parallel data packing strategy to facilitate the training of LLaVA-OneVision-1.5 within a $16,000 budget. (3) State-of-the-art Performance: Experimental results demonstrate that LLaVA-OneVision-1.5 yields exceptionally competitive performance across a broad range of downstream tasks. Specifically, LLaVA-OneVision-1.5-8B outperforms Qwen2.5-VL-7B on 18 of 27 benchmarks, and LLaVA-OneVision-1.5-4B surpasses Qwen2.5-VL-3B on all 27 benchmarks. We anticipate releasing LLaVA-OneVision-1.5-RL shortly and encourage the community to await further updates.

Haitao Lin, Odin Zhang, Jia Xu et al.

The affinity and specificity of protein-molecule binding directly impact functional outcomes, uncovering the mechanisms underlying biological regulation and signal transduction. Most deep-learning-based prediction approaches focus on structures of atoms or fragments. However, quantum chemical properties, such as electronic structures, are the key to unveiling interaction patterns but remain largely underexplored. To bridge this gap, we propose ECBind, a method for tokenizing electron cloud signals into quantized embeddings, enabling their integration into downstream tasks such as binding affinity prediction. By incorporating electron densities, ECBind helps uncover binding modes that cannot be fully represented by atom-level models. Specifically, to remove the redundancy inherent in electron cloud signals, a structure-aware transformer and hierarchical codebooks encode 3D binding sites enriched with electron structures into tokens. These tokenized codes are then used for specific tasks with labels. To extend its applicability to a wider range of scenarios, we utilize knowledge distillation to develop an electron-cloud-agnostic prediction model. Experimentally, ECBind demonstrates state-of-the-art performance across multiple tasks, achieving improvements of 6.42\% and 15.58\% in per-structure Pearson and Spearman correlation coefficients, respectively.

Zheng Cheng, Rendong Wang, Zhicheng Wang

Recently, multi-modal large language models have made significant progress. However, visual information lacking of guidance from the user's intention may lead to redundant computation and involve unnecessary visual noise, especially in long, untrimmed videos. To address this issue, we propose FocusChat, a text-guided multi-modal large language model (LLM) that emphasizes visual information correlated to the user's prompt. In detail, Our model first undergoes the semantic extraction module, which comprises a visual semantic branch and a text semantic branch to extract image and text semantics, respectively. The two branches are combined using the Spatial-Temporal Filtering Module (STFM). STFM enables explicit spatial-level information filtering and implicit temporal-level feature filtering, ensuring that the visual tokens are closely aligned with the user's query. It lowers the essential number of visual tokens inputted into the LLM. FocusChat significantly outperforms Video-LLaMA in zero-shot experiments, using an order of magnitude less training data with only 16 visual tokens occupied. It achieves results comparable to the state-of-the-art in few-shot experiments, with only 0.72M pre-training data.

Guojiang Zhao, Sihang Li, Zixiang Lu et al.

Large Language Models(LLMs) have demonstrated remarkable performance across various domains, yet their capabilities in molecular reasoning remain insufficiently explored. Current approaches tend to rely heavily on general-purpose prompting, which lacks domain-specific molecular semantics, while those that use fine-tuning strategies often face challenges with interpretability and reasoning depth. To address these issues, we introduce MolReasoner, a two-stage framework designed to transition LLMs from memorization towards chemical reasoning. First, we propose Mol-SFT, which initializes the model's reasoning abilities via synthetic Chain-of-Thought(CoT) samples generated by GPT-4o and verified for chemical accuracy. Subsequently, Mol-RL applies reinforcement learning with specialized reward functions designed explicitly to align chemical structures with linguistic descriptions, thereby enhancing molecular reasoning capabilities. Our approach notably enhances interpretability, improving the model 's molecular understanding and enabling better generalization. Extensive experiments demonstrate that MolReasoner outperforms existing methods, and marking a significant shift from memorization-based outputs to robust chemical reasoning.

Zheng Cheng, Wenri Wang, Guangyong Chen et al.

Underwater image enhancement (UIE) techniques aim to improve visual quality of images captured in aquatic environments by addressing degradation issues caused by light absorption and scattering effects, including color distortion, blurring, and low contrast. Current mainstream solutions predominantly employ multi-scale feature extraction (MSFE) mechanisms to enhance reconstruction quality through multi-resolution feature fusion. However, our extensive experiments demonstrate that high-quality image reconstruction does not necessarily rely on multi-scale feature fusion. Contrary to popular belief, our experiments show that single-scale feature extraction alone can match or surpass the performance of multi-scale methods, significantly reducing complexity. To comprehensively explore single-scale feature potential in underwater enhancement, we propose an innovative Single-Scale Decomposition Network (SSD-Net). This architecture introduces an asymmetrical decomposition mechanism that disentangles input image into clean layer along with degradation layer. The former contains scene-intrinsic information and the latter encodes medium-induced interference. It uniquely combines CNN's local feature extraction capabilities with Transformer's global modeling strengths through two core modules: 1) Parallel Feature Decomposition Block (PFDB), implementing dual-branch feature space decoupling via efficient attention operations and adaptive sparse transformer; 2) Bidirectional Feature Communication Block (BFCB), enabling cross-layer residual interactions for complementary feature mining and fusion. This synergistic design preserves feature decomposition independence while establishing dynamic cross-layer information pathways, effectively enhancing degradation decoupling capacity.

Qiang Guo, Hongwei Chen, Yuxi Wang et al.

Single-pixel cameras based on the concepts of compressed sensing (CS) leverage the inherent structure of images to retrieve them with far fewer measurements and operate efficiently over a significantly broader spectral range than conventional silicon-based cameras. Recently, photonic time-stretch (PTS) technique facilitates the emergence of high-speed single-pixel cameras. A significant breakthrough in imaging speed of single-pixel cameras enables observation of fast dynamic phenomena. However, according to CS theory, image reconstruction is an iterative process that consumes enormous amounts of computational time and cannot be performed in real time. To address this challenge, we propose a novel single-pixel imaging technique that can produce high-quality images through rapid acquisition of their effective spatial Fourier spectrum. We employ phase-shifting sinusoidal structured illumination instead of random illumination for spectrum acquisition and apply inverse Fourier transform to the obtained spectrum for image restoration. We evaluate the performance of our prototype system by recognizing quick response (QR) codes and flow cytometric screening of cells. A frame rate of 625 kHz and a compression ratio of 10% are experimentally demonstrated in accordance with the recognition rate of the QR code. An imaging flow cytometer enabling high-content screening with an unprecedented throughput of 100,000 cells/s is also demonstrated. For real-time imaging applications, the proposed single-pixel microscope can significantly reduce the time required for image reconstruction by two orders of magnitude, which can be widely applied in industrial quality control and label-free biomedical imaging.