Graph Prompt Learning: A Comprehensive Survey and BeyondXiangguo Sun, Jiawen Zhang, Xixi Wu et al.
Artificial General Intelligence (AGI) has revolutionized numerous fields, yet its integration with graph data, a cornerstone in our interconnected world, remains nascent. This paper presents a pioneering survey on the emerging domain of graph prompts in AGI, addressing key challenges and opportunities in harnessing graph data for AGI applications. Despite substantial advancements in AGI across natural language processing and computer vision, the application to graph data is relatively underexplored. This survey critically evaluates the current landscape of AGI in handling graph data, highlighting the distinct challenges in cross-modality, cross-domain, and cross-task applications specific to graphs. Our work is the first to propose a unified framework for understanding graph prompt learning, offering clarity on prompt tokens, token structures, and insertion patterns in the graph domain. We delve into the intrinsic properties of graph prompts, exploring their flexibility, expressiveness, and interplay with existing graph models. A comprehensive taxonomy categorizes over 100 works in this field, aligning them with pre-training tasks across node-level, edge-level, and graph-level objectives. Additionally, we present, ProG, a Python library, and an accompanying website, to support and advance research in graph prompting. The survey culminates in a discussion of current challenges and future directions, offering a roadmap for research in graph prompting within AGI. Through this comprehensive analysis, we aim to catalyze further exploration and practical applications of AGI in graph data, underlining its potential to reshape AGI fields and beyond. ProG and the website can be accessed by \url{https://github.com/WxxShirley/Awesome-Graph-Prompt}, and \url{https://github.com/sheldonresearch/ProG}, respectively.
Mamba or Transformer for Time Series Forecasting? Mixture of Universals (MoU) Is All You NeedSijia Peng, Yun Xiong, Yangyong Zhu et al.
Time series forecasting requires balancing short-term and long-term dependencies for accurate predictions. Existing methods mainly focus on long-term dependency modeling, neglecting the complexities of short-term dynamics, which may hinder performance. Transformers are superior in modeling long-term dependencies but are criticized for their quadratic computational cost. Mamba provides a near-linear alternative but is reported less effective in time series longterm forecasting due to potential information loss. Current architectures fall short in offering both high efficiency and strong performance for long-term dependency modeling. To address these challenges, we introduce Mixture of Universals (MoU), a versatile model to capture both short-term and long-term dependencies for enhancing performance in time series forecasting. MoU is composed of two novel designs: Mixture of Feature Extractors (MoF), an adaptive method designed to improve time series patch representations for short-term dependency, and Mixture of Architectures (MoA), which hierarchically integrates Mamba, FeedForward, Convolution, and Self-Attention architectures in a specialized order to model long-term dependency from a hybrid perspective. The proposed approach achieves state-of-the-art performance while maintaining relatively low computational costs. Extensive experiments on seven real-world datasets demonstrate the superiority of MoU. Code is available at https://github.com/lunaaa95/mou/.
MAGIC: Detecting Advanced Persistent Threats via Masked Graph Representation LearningZian Jia, Yun Xiong, Yuhong Nan et al.
Advance Persistent Threats (APTs), adopted by most delicate attackers, are becoming increasing common and pose great threat to various enterprises and institutions. Data provenance analysis on provenance graphs has emerged as a common approach in APT detection. However, previous works have exhibited several shortcomings: (1) requiring attack-containing data and a priori knowledge of APTs, (2) failing in extracting the rich contextual information buried within provenance graphs and (3) becoming impracticable due to their prohibitive computation overhead and memory consumption. In this paper, we introduce MAGIC, a novel and flexible self-supervised APT detection approach capable of performing multi-granularity detection under different level of supervision. MAGIC leverages masked graph representation learning to model benign system entities and behaviors, performing efficient deep feature extraction and structure abstraction on provenance graphs. By ferreting out anomalous system behaviors via outlier detection methods, MAGIC is able to perform both system entity level and batched log level APT detection. MAGIC is specially designed to handle concept drift with a model adaption mechanism and successfully applies to universal conditions and detection scenarios. We evaluate MAGIC on three widely-used datasets, including both real-world and simulated attacks. Evaluation results indicate that MAGIC achieves promising detection results in all scenarios and shows enormous advantage over state-of-the-art APT detection approaches in performance overhead.
Retrieval-Augmented Generation for Large Language Models: A SurveyYunfan Gao, Yun Xiong, Xinyu Gao et al.
Large Language Models (LLMs) showcase impressive capabilities but encounter challenges like hallucination, outdated knowledge, and non-transparent, untraceable reasoning processes. Retrieval-Augmented Generation (RAG) has emerged as a promising solution by incorporating knowledge from external databases. This enhances the accuracy and credibility of the generation, particularly for knowledge-intensive tasks, and allows for continuous knowledge updates and integration of domain-specific information. RAG synergistically merges LLMs' intrinsic knowledge with the vast, dynamic repositories of external databases. This comprehensive review paper offers a detailed examination of the progression of RAG paradigms, encompassing the Naive RAG, the Advanced RAG, and the Modular RAG. It meticulously scrutinizes the tripartite foundation of RAG frameworks, which includes the retrieval, the generation and the augmentation techniques. The paper highlights the state-of-the-art technologies embedded in each of these critical components, providing a profound understanding of the advancements in RAG systems. Furthermore, this paper introduces up-to-date evaluation framework and benchmark. At the end, this article delineates the challenges currently faced and points out prospective avenues for research and development.
6.4LGSep 6, 2024
An Efficient and Generalizable Symbolic Regression Method for Time Series AnalysisYi Xie, Tianyu Qiu, Yun Xiong et al.
Time series analysis and prediction methods currently excel in quantitative analysis, offering accurate future predictions and diverse statistical indicators, but generally falling short in elucidating the underlying evolution patterns of time series. To gain a more comprehensive understanding and provide insightful explanations, we utilize symbolic regression techniques to derive explicit expressions for the non-linear dynamics in the evolution of time series variables. However, these techniques face challenges in computational efficiency and generalizability across diverse real-world time series data. To overcome these challenges, we propose \textbf{N}eural-\textbf{E}nhanced \textbf{Mo}nte-Carlo \textbf{T}ree \textbf{S}earch (NEMoTS) for time series. NEMoTS leverages the exploration-exploitation balance of Monte-Carlo Tree Search (MCTS), significantly reducing the search space in symbolic regression and improving expression quality. Furthermore, by integrating neural networks with MCTS, NEMoTS not only capitalizes on their superior fitting capabilities to concentrate on more pertinent operations post-search space reduction, but also replaces the complex and time-consuming simulation process, thereby substantially improving computational efficiency and generalizability in time series analysis. NEMoTS offers an efficient and comprehensive approach to time series analysis. Experiments with three real-world datasets demonstrate NEMoTS's significant superiority in performance, efficiency, reliability, and interpretability, making it well-suited for large-scale real-world time series data.
11.1AIJul 14, 2025Code
DeepSeek: Paradigm Shifts and Technical Evolution in Large AI ModelsLuolin Xiong, Haofen Wang, Xi Chen et al.
DeepSeek, a Chinese Artificial Intelligence (AI) startup, has released their V3 and R1 series models, which attracted global attention due to their low cost, high performance, and open-source advantages. This paper begins by reviewing the evolution of large AI models focusing on paradigm shifts, the mainstream Large Language Model (LLM) paradigm, and the DeepSeek paradigm. Subsequently, the paper highlights novel algorithms introduced by DeepSeek, including Multi-head Latent Attention (MLA), Mixture-of-Experts (MoE), Multi-Token Prediction (MTP), and Group Relative Policy Optimization (GRPO). The paper then explores DeepSeek engineering breakthroughs in LLM scaling, training, inference, and system-level optimization architecture. Moreover, the impact of DeepSeek models on the competitive AI landscape is analyzed, comparing them to mainstream LLMs across various fields. Finally, the paper reflects on the insights gained from DeepSeek innovations and discusses future trends in the technical and engineering development of large AI models, particularly in data, training, and reasoning.
0.5CLNov 2, 2023
Joint Learning of Local and Global Features for Aspect-based Sentiment ClassificationHao Niu, Yun Xiong, Xiaosu Wang et al.
Aspect-based sentiment classification (ASC) aims to judge the sentiment polarity conveyed by the given aspect term in a sentence. The sentiment polarity is not only determined by the local context but also related to the words far away from the given aspect term. Most recent efforts related to the attention-based models can not sufficiently distinguish which words they should pay more attention to in some cases. Meanwhile, graph-based models are coming into ASC to encode syntactic dependency tree information. But these models do not fully leverage syntactic dependency trees as they neglect to incorporate dependency relation tag information into representation learning effectively. In this paper, we address these problems by effectively modeling the local and global features. Firstly, we design a local encoder containing: a Gaussian mask layer and a covariance self-attention layer. The Gaussian mask layer tends to adjust the receptive field around aspect terms adaptively to deemphasize the effects of unrelated words and pay more attention to local information. The covariance self-attention layer can distinguish the attention weights of different words more obviously. Furthermore, we propose a dual-level graph attention network as a global encoder by fully employing dependency tag information to capture long-distance information effectively. Our model achieves state-of-the-art performance on both SemEval 2014 and Twitter datasets.
8.6BMFeb 18, 2024
DDIPrompt: Drug-Drug Interaction Event Prediction based on Graph Prompt LearningYingying Wang, Yun Xiong, Xixi Wu et al.
Drug combinations can cause adverse drug-drug interactions(DDIs). Identifying specific effects is crucial for developing safer therapies. Previous works on DDI event prediction have typically been limited to using labels of specific events as supervision, which renders them insufficient to address two significant challenges: (1) the bias caused by \textbf{highly imbalanced event distribution} where certain interaction types are vastly under-represented. (2) the \textbf{scarcity of labeled data for rare events}, a pervasive issue where rare yet potentially critical interactions are often overlooked or under-explored due to limited available data. In response, we offer ``DDIPrompt'', an innovative solution inspired by the recent advancements in graph prompt learning. Our framework aims to address these issues by leveraging the intrinsic knowledge from pre-trained models, which can be efficiently deployed with minimal downstream data. Specifically, to solve the first challenge, DDIPrompt features a hierarchical pre-training strategy to foster a generalized and comprehensive understanding of drug properties. It captures intra-molecular structures through augmented links based on structural proximity between drugs, further learns inter-molecular interactions emphasizing edge connections rather than concrete catagories. For the second challenge, we implement a prototype-enhanced prompting mechanism during inference. This mechanism, refined by few-shot examples from each category, effectively harnesses the rich pre-training knowledge to enhance prediction accuracy, particularly for these rare but crucial interactions. Extensive experiments on two benchmark datasets demonstrate DDIPrompt's SOTA performance, especially for those rare DDI events.
6.5CVFeb 17, 2024
DiffPoint: Single and Multi-view Point Cloud Reconstruction with ViT Based Diffusion ModelYu Feng, Xing Shi, Mengli Cheng et al.
As the task of 2D-to-3D reconstruction has gained significant attention in various real-world scenarios, it becomes crucial to be able to generate high-quality point clouds. Despite the recent success of deep learning models in generating point clouds, there are still challenges in producing high-fidelity results due to the disparities between images and point clouds. While vision transformers (ViT) and diffusion models have shown promise in various vision tasks, their benefits for reconstructing point clouds from images have not been demonstrated yet. In this paper, we first propose a neat and powerful architecture called DiffPoint that combines ViT and diffusion models for the task of point cloud reconstruction. At each diffusion step, we divide the noisy point clouds into irregular patches. Then, using a standard ViT backbone that treats all inputs as tokens (including time information, image embeddings, and noisy patches), we train our model to predict target points based on input images. We evaluate DiffPoint on both single-view and multi-view reconstruction tasks and achieve state-of-the-art results. Additionally, we introduce a unified and flexible feature fusion module for aggregating image features from single or multiple input images. Furthermore, our work demonstrates the feasibility of applying unified architectures across languages and images to improve 3D reconstruction tasks.
Enhancing Masked Time-Series Modeling via Dropping PatchesTianyu Qiu, Yi Xie, Yun Xiong et al.
This paper explores how to enhance existing masked time-series modeling by randomly dropping sub-sequence level patches of time series. On this basis, a simple yet effective method named DropPatch is proposed, which has two remarkable advantages: 1) It improves the pre-training efficiency by a square-level advantage; 2) It provides additional advantages for modeling in scenarios such as in-domain, cross-domain, few-shot learning and cold start. This paper conducts comprehensive experiments to verify the effectiveness of the method and analyze its internal mechanism. Empirically, DropPatch strengthens the attention mechanism, reduces information redundancy and serves as an efficient means of data augmentation. Theoretically, it is proved that DropPatch slows down the rate at which the Transformer representations collapse into the rank-1 linear subspace by randomly dropping patches, thus optimizing the quality of the learned representations
9.4LGJun 29, 2025
The language of time: a language model perspective on time-series foundation modelsYi Xie, Yun Xiong, Zejian Shi et al.
With the rise of large language models, the paradigm of training foundation models with massive parameter counts on vast datasets has been adopted in multiple domains to achieve remarkable success. Time series foundation models represent a significant extension of this paradigm, demonstrating exceptional expressive power, generalization, and cross-domain transferability. However, this gives rise to a fundamental paradox: time series data reflect distinct dynamical systems, making cross-domain transfer intuitively implausible, yet this is contradicted by the models' empirical success. To resolve this paradox, this paper investigates, from both theoretical and experimental perspectives, the representation learning mechanisms and generalization capabilities of patch-based time series foundation models. We argue that such models are not merely applying a new architecture but are fundamentally generalizing the representation paradigm of language models by extending deterministic vector-based representations to latent probabilistic distributional forms. Our theoretical analysis supports this framework by demonstrating that continuous time-series patches can be faithfully quantized into a discrete vocabulary whose key statistical properties are highly consistent with those of natural language. This generalization allows time series models to inherit the robust representation and transfer abilities of large language models, thereby explaining their superior performance in temporal tasks. Ultimately, our work provides a rigorous theoretical cornerstone for understanding, evaluating, and improving the safety and reliability of large-scale time series foundation models.
8.4CVMay 14, 2025
A 2D Semantic-Aware Position Encoding for Vision TransformersXi Chen, Shiyang Zhou, Muqi Huang et al.
Vision transformers have demonstrated significant advantages in computer vision tasks due to their ability to capture long-range dependencies and contextual relationships through self-attention. However, existing position encoding techniques, which are largely borrowed from natural language processing, fail to effectively capture semantic-aware positional relationships between image patches. Traditional approaches like absolute position encoding and relative position encoding primarily focus on 1D linear position relationship, often neglecting the semantic similarity between distant yet contextually related patches. These limitations hinder model generalization, translation equivariance, and the ability to effectively handle repetitive or structured patterns in images. In this paper, we propose 2-Dimensional Semantic-Aware Position Encoding ($\text{SaPE}^2$), a novel position encoding method with semantic awareness that dynamically adapts position representations by leveraging local content instead of fixed linear position relationship or spatial coordinates. Our method enhances the model's ability to generalize across varying image resolutions and scales, improves translation equivariance, and better aggregates features for visually similar but spatially distant patches. By integrating $\text{SaPE}^2$ into vision transformers, we bridge the gap between position encoding and perceptual similarity, thereby improving performance on computer vision tasks.
3.6CVJun 16, 2025
AttentionDrag: Exploiting Latent Correlation Knowledge in Pre-trained Diffusion Models for Image EditingBiao Yang, Muqi Huang, Yuhui Zhang et al.
Traditional point-based image editing methods rely on iterative latent optimization or geometric transformations, which are either inefficient in their processing or fail to capture the semantic relationships within the image. These methods often overlook the powerful yet underutilized image editing capabilities inherent in pre-trained diffusion models. In this work, we propose a novel one-step point-based image editing method, named AttentionDrag, which leverages the inherent latent knowledge and feature correlations within pre-trained diffusion models for image editing tasks. This framework enables semantic consistency and high-quality manipulation without the need for extensive re-optimization or retraining. Specifically, we reutilize the latent correlations knowledge learned by the self-attention mechanism in the U-Net module during the DDIM inversion process to automatically identify and adjust relevant image regions, ensuring semantic validity and consistency. Additionally, AttentionDrag adaptively generates masks to guide the editing process, enabling precise and context-aware modifications with friendly interaction. Our results demonstrate a performance that surpasses most state-of-the-art methods with significantly faster speeds, showing a more efficient and semantically coherent solution for point-based image editing tasks.
Triangle Graph Interest Network for Click-through Rate PredictionWensen Jiang, Yizhu Jiao, Qingqin Wang et al.
Click-through rate prediction is a critical task in online advertising. Currently, many existing methods attempt to extract user potential interests from historical click behavior sequences. However, it is difficult to handle sparse user behaviors or broaden interest exploration. Recently, some researchers incorporate the item-item co-occurrence graph as an auxiliary. Due to the elusiveness of user interests, those works still fail to determine the real motivation of user click behaviors. Besides, those works are more biased towards popular or similar commodities. They lack an effective mechanism to break the diversity restrictions. In this paper, we point out two special properties of triangles in the item-item graphs for recommendation systems: Intra-triangle homophily and Inter-triangle heterophiy. Based on this, we propose a novel and effective framework named Triangle Graph Interest Network (TGIN). For each clicked item in user behavior sequences, we introduce the triangles in its neighborhood of the item-item graphs as a supplement. TGIN regards these triangles as the basic units of user interests, which provide the clues to capture the real motivation for a user clicking an item. We characterize every click behavior by aggregating the information of several interest units to alleviate the elusive motivation problem. The attention mechanism determines users' preference for different interest units. By selecting diverse and relative triangles, TGIN brings in novel and serendipitous items to expand exploration opportunities of user interests. Then, we aggregate the multi-level interests of historical behavior sequences to improve CTR prediction. Extensive experiments on both public and industrial datasets clearly verify the effectiveness of our framework.
Continuous-Time Sequential Recommendation with Temporal Graph Collaborative TransformerZiwei Fan, Zhiwei Liu, Jiawei Zhang et al.
In order to model the evolution of user preference, we should learn user/item embeddings based on time-ordered item purchasing sequences, which is defined as Sequential Recommendation (SR) problem. Existing methods leverage sequential patterns to model item transitions. However, most of them ignore crucial temporal collaborative signals, which are latent in evolving user-item interactions and coexist with sequential patterns. Therefore, we propose to unify sequential patterns and temporal collaborative signals to improve the quality of recommendation, which is rather challenging. Firstly, it is hard to simultaneously encode sequential patterns and collaborative signals. Secondly, it is non-trivial to express the temporal effects of collaborative signals. Hence, we design a new framework Temporal Graph Sequential Recommender (TGSRec) upon our defined continuous-time bi-partite graph. We propose a novel Temporal Collaborative Trans-former (TCT) layer in TGSRec, which advances the self-attention mechanism by adopting a novel collaborative attention. TCT layer can simultaneously capture collaborative signals from both users and items, as well as considering temporal dynamics inside sequential patterns. We propagate the information learned fromTCTlayerover the temporal graph to unify sequential patterns and temporal collaborative signals. Empirical results on five datasets show that TGSRec significantly outperforms other baselines, in average up to 22.5% and 22.1%absolute improvements in Recall@10and MRR, respectively.
Sub-graph Contrast for Scalable Self-Supervised Graph Representation LearningYizhu Jiao, Yun Xiong, Jiawei Zhang et al.
Graph representation learning has attracted lots of attention recently. Existing graph neural networks fed with the complete graph data are not scalable due to limited computation and memory costs. Thus, it remains a great challenge to capture rich information in large-scale graph data. Besides, these methods mainly focus on supervised learning and highly depend on node label information, which is expensive to obtain in the real world. As to unsupervised network embedding approaches, they overemphasize node proximity instead, whose learned representations can hardly be used in downstream application tasks directly. In recent years, emerging self-supervised learning provides a potential solution to address the aforementioned problems. However, existing self-supervised works also operate on the complete graph data and are biased to fit either global or very local (1-hop neighborhood) graph structures in defining the mutual information based loss terms. In this paper, a novel self-supervised representation learning method via Subgraph Contrast, namely \textsc{Subg-Con}, is proposed by utilizing the strong correlation between central nodes and their sampled subgraphs to capture regional structure information. Instead of learning on the complete input graph data, with a novel data augmentation strategy, \textsc{Subg-Con} learns node representations through a contrastive loss defined based on subgraphs sampled from the original graph instead. Compared with existing graph representation learning approaches, \textsc{Subg-Con} has prominent performance advantages in weaker supervision requirements, model learning scalability, and parallelization. Extensive experiments verify both the effectiveness and the efficiency of our work compared with both classic and state-of-the-art graph representation learning approaches on multiple real-world large-scale benchmark datasets from different domains.