Dali Wang

Dali Wang, Yunyao Zhang, Junqing Yu et al.

Micro-video popularity prediction (MVPP) aims to forecast the future popularity of videos on online media, which is essential for applications such as content recommendation and traffic allocation. In real-world scenarios, it is critical for MVPP approaches to understand both the temporal dynamics of a given video (temporal) and its historical relevance to other videos (spatial). However, existing approaches sufer from limitations in both dimensions: temporally, they rely on sparse short-range sampling that restricts content perception; spatially, they depend on flat retrieval memory with limited capacity and low efficiency, hindering scalable knowledge utilization. To overcome these limitations, we propose a unified framework that achieves joint spatio-temporal enlargement, enabling precise perception of extremely long video sequences while supporting a scalable memory bank that can infinitely expand to incorporate all relevant historical videos. Technically, we employ a Temporal Enlargement driven by a frame scoring module that extracts highlight cues from video frames through two complementary pathways: sparse sampling and dense perception. Their outputs are adaptively fused to enable robust long-sequence content understanding. For Spatial Enlargement, we construct a Topology-Aware Memory Bank that hierarchically clusters historically relevant content based on topological relationships. Instead of directly expanding memory capacity, we update the encoder features of the corresponding clusters when incorporating new videos, enabling unbounded historical association without unbounded storage growth. Extensive experiments on three widely used MVPP benchmarks demonstrate that our method consistently outperforms 11 strong baselines across mainstream metrics, achieving robust improvements in both prediction accuracy and ranking consistency.

Kareem Shaik, Dali Wang, Weijian Zheng et al.

The understanding of large-scale scientific software poses significant challenges due to its diverse codebase, extensive code length, and target computing architectures. The emergence of generative AI, specifically large language models (LLMs), provides novel pathways for understanding such complex scientific codes. This paper presents S3LLM, an LLM-based framework designed to enable the examination of source code, code metadata, and summarized information in conjunction with textual technical reports in an interactive, conversational manner through a user-friendly interface. S3LLM leverages open-source LLaMA-2 models to enhance code analysis through the automatic transformation of natural language queries into domain-specific language (DSL) queries. Specifically, it translates these queries into Feature Query Language (FQL), enabling efficient scanning and parsing of entire code repositories. In addition, S3LLM is equipped to handle diverse metadata types, including DOT, SQL, and customized formats. Furthermore, S3LLM incorporates retrieval augmented generation (RAG) and LangChain technologies to directly query extensive documents. S3LLM demonstrates the potential of using locally deployed open-source LLMs for the rapid understanding of large-scale scientific computing software, eliminating the need for extensive coding expertise, and thereby making the process more efficient and effective. S3LLM is available at https://github.com/ResponsibleAILab/s3llm.

Dawei Gao, Dali Wang, Zhuowei Gu et al.

Large-scale numerical simulations underpin modern scientific discovery but remain constrained by prohibitive computational costs. AI surrogates offer acceleration, yet adoption in mission-critical settings is limited by concerns over physical plausibility, trustworthiness, and the fusion of heterogeneous data. We introduce PHASE, a modular deep-learning framework for physics-integrated, heterogeneity-aware surrogates in scientific simulations. PHASE combines data-type-aware encoders for heterogeneous inputs with multi-level physics-based constraints that promote consistency from local dynamics to global system behavior. We validate PHASE on the biogeochemical (BGC) spin-up workflow of the U.S. Department of Energy's Energy Exascale Earth System Model (E3SM) Land Model (ELM), presenting-to our knowledge-the first scientifically validated AI-accelerated solution for this task. Using only the first 20 simulation years, PHASE infers a near-equilibrium state that otherwise requires more than 1,200 years of integration, yielding an effective reduction in required integration length by at least 60x. The framework is enabled by a pipeline for fusing heterogeneous scientific data and demonstrates strong generalization to higher spatial resolutions with minimal fine-tuning. These results indicate that PHASE captures governing physical regularities rather than surface correlations, enabling practical, physically consistent acceleration of land-surface modeling and other complex scientific workflows.

Xiao Wang, Jong-Youl Choi, Takuya Kurihaya et al.

Sparse observations and coarse-resolution climate models limit effective regional decision-making, underscoring the need for robust downscaling. However, existing AI methods struggle with generalization across variables and geographies and are constrained by the quadratic complexity of Vision Transformer (ViT) self-attention. We introduce ORBIT-2, a scalable foundation model for global, hyper-resolution climate downscaling. ORBIT-2 incorporates two key innovations: (1) Residual Slim ViT (Reslim), a lightweight architecture with residual learning and Bayesian regularization for efficient, robust prediction; and (2) TILES, a tile-wise sequence scaling algorithm that reduces self-attention complexity from quadratic to linear, enabling long-sequence processing and massive parallelism. ORBIT-2 scales to 10 billion parameters across 65,536 GPUs, achieving up to 4.1 exaFLOPS sustained throughput and 74--98% strong scaling efficiency. It supports downscaling to 0.9 km global resolution and processes sequences up to 4.2 billion tokens. On 7 km resolution benchmarks, ORBIT-2 achieves high accuracy with $R^2$ scores in the range of 0.98--0.99 against observational data.

Jun Zhuang, Dali Wang

Microscopic images from multiple modalities can produce plentiful experimental information. In practice, biological or physical constraints under a given observation period may prevent researchers from acquiring enough microscopic scanning. Recent studies demonstrate that image synthesis is one of the popular approaches to release such constraints. Nonetheless, most existing synthesis approaches only translate images from the source domain to the target domain without solid geometric associations. To embrace this challenge, we propose an innovative model architecture, BANIS, to synthesize diversified microscopic images from multi-source domains with distinct geometric features. The experimental outcomes indicate that BANIS successfully synthesizes favorable image pairs on C. elegans microscopy embryonic images. To the best of our knowledge, BANIS is the first application to synthesize microscopic images that associate distinct spatial geometric features from multi-source domains.

Dali Wang, Zheng Lu, Zhirong Bao

The detection of cell shape changes in 3D time-lapse images of complex tissues is an important task. However, it is a challenging and tedious task to establish a comprehensive dataset to improve the performance of deep learning models. In the paper, we present a deep learning approach to augment 3D live images of the Caenorhabditis elegans embryo, so that we can further speed up the specific structural pattern recognition. We use an unsupervised training over unlabeled images to generate supplementary datasets for further pattern recognition. Technically, we used Alex-style neural networks in a generative adversarial network framework to generate new datasets that have common features of the C. elegans membrane structure. We also made the dataset available for a broad scientific community.

Weijian Zheng, Dali Wang, Fengguang Song

The amount of large-scale scientific computing software is dramatically increasing. In this work, we designed a new language, named feature query language (FQL), to collect and extract software features from a quick static code analysis. We designed and implemented an FQL toolkit to automatically detect and present the software features using an extensible query repository. Several large-scale, high performance computing (HPC) scientific codes have been used in the paper to demonstrate the HPC-related feature extraction and information collection. Although we emphasized the HPC features in the study, the toolkit can be easily extended to answer general software feature questions, such as coding pattern and hardware dependency.

Chengcheng Li, Zi Wang, Dali Wang et al.

Most existing channel pruning methods formulate the pruning task from a perspective of inefficiency reduction which iteratively rank and remove the least important filters, or find the set of filters that minimizes some reconstruction errors after pruning. In this work, we investigate the channel pruning from a new perspective with statistical modeling. We hypothesize that the number of filters at a certain layer reflects the level of 'redundancy' in that layer and thus formulate the pruning problem from the aspect of redundancy reduction. Based on both theoretic analysis and empirical studies, we make an important discovery: randomly pruning filters from layers of high redundancy outperforms pruning the least important filters across all layers based on the state-of-the-art ranking criterion. These results advance our understanding of pruning and further testify to the recent findings that the structure of the pruned model plays a key role in the network efficiency as compared to inherited weights.

Zi Wang, Chengcheng Li, Dali Wang et al.

Channel-based pruning has achieved significant successes in accelerating deep convolutional neural network, whose pipeline is an iterative three-step procedure: ranking, pruning and fine-tuning. However, this iterative procedure is computationally expensive. In this study, we present a novel computationally efficient channel pruning approach based on the coarse ranking that utilizes the intermediate results during fine-tuning to rank the importance of filters, built upon state-of-the-art works with data-driven ranking criteria. The goal of this work is not to propose a single improved approach built upon a specific channel pruning method, but to introduce a new general framework that works for a series of channel pruning methods. Various benchmark image datasets (CIFAR-10, ImageNet, Birds-200, and Flowers-102) and network architectures (AlexNet and VGG-16) are utilized to evaluate the proposed approach for object classification purpose. Experimental results show that the proposed method can achieve almost identical performance with the corresponding state-of-the-art works (baseline) while our ranking time is negligibly short. In specific, with the proposed method, 75% and 54% of the total computation time for the whole pruning procedure can be reduced for AlexNet on CIFAR-10, and for VGG-16 on ImageNet, respectively. Our approach would significantly facilitate pruning practice, especially on resource-constrained platforms.

Zi Wang, Dali Wang, Chengcheng Li et al.

Cell movement in the early phase of C. elegans development is regulated by a highly complex process in which a set of rules and connections are formulated at distinct scales. Previous efforts have shown that agent-based, multi-scale modeling systems can integrate physical and biological rules and provide new avenues to study developmental systems. However, the application of these systems to model cell movement is still challenging and requires a comprehensive understanding of regulation networks at the right scales. Recent developments in deep learning and reinforcement learning provide an unprecedented opportunity to explore cell movement using 3D time-lapse images. We present a deep reinforcement learning approach within an ABM system to characterize cell movement in C. elegans embryogenesis. Our modeling system captures the complexity of cell movement patterns in the embryo and overcomes the local optimization problem encountered by traditional rule-based, ABM that uses greedy algorithms. We tested our model with two real developmental processes: the anterior movement of the Cpaaa cell via intercalation and the rearrangement of the left-right asymmetry. In the first case, model results showed that Cpaaa's intercalation is an active directional cell movement caused by the continuous effects from a longer distance, as opposed to a passive movement caused by neighbor cell movements. This is because the learning-based simulation found that a passive movement model could not lead Cpaaa to the predefined destination. In the second case, a leader-follower mechanism well explained the collective cell movement pattern. These results showed that our approach to introduce deep reinforcement learning into ABM can test regulatory mechanisms by exploring cell migration paths in a reverse engineering perspective. This model opens new doors to explore large datasets generated by live imaging.